EWM26104.1, cds4538 (CDS) Nannochloropsis gaditana

Overview
NameEWM26104.1
Unique Namecds4538
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:892459..892972 +
Alignment locationCM002463.1:893139..894838 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26104.1
ProductRNA helicase, DEAD-box type
Orig transcript idgnl|cribi|Naga_100014g28.9281.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:892459..892972 +
CM002463.1supercontigCM002463.1:893139..894838 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
IPR025313DUF4217
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|585108098|gb|EWM26104.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 1530.77 bits (3962), Expect = 0.000e+0
Identity = 737/737 (100.00%), Postives = 737/737 (100.00%), Query Frame = 0
Query:    1 MSAYFVKTKHVTMVYVVLSMVNFLCQACPSKSCGQPFTGSTSPLRVTAHGHSSDPSRLLMPVTCAFTGLYVMGKHKKLLQQQRQHQKKVAKVTKTLTQPKVKASNKAQRKELEARMARWTKEQKEEAANRRTEEELNEEESDGEEMQENGVIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAKKARKGVDEKSGTALPETPRPEAGSGEGKGSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFTR 737
            MSAYFVKTKHVTMVYVVLSMVNFLCQACPSKSCGQPFTGSTSPLRVTAHGHSSDPSRLLMPVTCAFTGLYVMGKHKKLLQQQRQHQKKVAKVTKTLTQPKVKASNKAQRKELEARMARWTKEQKEEAANRRTEEELNEEESDGEEMQENGVIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAKKARKGVDEKSGTALPETPRPEAGSGEGKGSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFTR
Sbjct:    1 MSAYFVKTKHVTMVYVVLSMVNFLCQACPSKSCGQPFTGSTSPLRVTAHGHSSDPSRLLMPVTCAFTGLYVMGKHKKLLQQQRQHQKKVAKVTKTLTQPKVKASNKAQRKELEARMARWTKEQKEEAANRRTEEELNEEESDGEEMQENGVIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAKKARKGVDEKSGTALPETPRPEAGSGEGKGSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFTR 737          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|298705993|emb|CBJ29114.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 785.408 bits (2027), Expect = 0.000e+0
Identity = 387/555 (69.73%), Postives = 448/555 (80.72%), Query Frame = 0
Query:  199 AKKARK-GVDEKSGTALPETPRPEAGSGE---GKGSGGGAGKS--------GAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDK-----RFGSTGHKFSANNPYGRREAGDSRQFT 736
             +KARK   D+  G + P     E  +G+    +G+GG A K            FF++  F  LP+S     AL +L FV  T IQ+ AIPPLLAG+D+V AAKTGSGKTLAFLVPV+E L KVKW+ RNGT  IIISPTRELS+Q YGVLRD+ + G    THGL++GGANRRAEAERLVKGV++LV TPGRLLDHLQNTKGFL RN+Q+LVIDEADRILEQGFEE+MHQIIK LPK RQTMLFSATQTKKVEDL RLS++ +PV+VG  +    +TV GLEQGYVVCPSDKRFLLLFTFLK+N+++KIMVFFSSCNSVKFH+ELLNYID+PVMDIHGRQKQQ+RTT+FFQFC+QD G+LLCTDVAARGLDIPAVDWIIQ+DPPD   EYIHRVGRTARG +GKGRALLFL  EEVGFL+YLR AK  LNEYEFP KKVANVQ+QL++L+EKNYYLNKSAR+AYRSYLLAY+SHS KDI++VHELDLQAVARAFGF+VPPRVD+ LS++G KGR     +D+       G  GH FSA NPYG++  GD RQFT
Sbjct:   89 GEKARKRQRDDDQGGSAPSKRGKEGAAGKPQSSEGAGGAASKEEDKVQQLVKTGFFSDVEFSTLPLSSGMLSALAKLNFVMTTKIQAQAIPPLLAGEDMVGAAKTGSGKTLAFLVPVLECLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDVIENGNLKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTKGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIRNKPVYVGVDDAEQESTVDGLEQGYVVCPSDKRFLLLFTFLKKNRKKKIMVFFSSCNSVKFHSELLNYIDMPVMDIHGRQKQQKRTTSFFQFCKQDTGVLLCTDVAARGLDIPAVDWIIQFDPPDQTAEYIHRVGRTARGQSGKGRALLFLLPEEVGFLRYLRTAKAKLNEYEFPVKKVANVQSQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKDIYDVHELDLQAVARAFGFTVPPRVDLKLSARGQKGRGGGKERDQGRRKMAVGGGGHSFSATNPYGQKAPGDRRQFT 643          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|397639861|gb|EJK73804.1| (hypothetical protein THAOC_04552 [Thalassiosira oceanica])

HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 365/542 (67.34%), Postives = 415/542 (76.57%), Query Frame = 0
Query:  229 GSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEAD-----------------------------RILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGST-----GHKFSANNPYGRREAGDSRQFT 736
            GS     K    FFA   F  LP+SD T+ AL  + F  MT IQSL+IP LL+GKD++ AAKTGSGKTLAFL+PVVELL   K+ +RNGTGAI+ISPTREL+MQIYGV +DLC  G H  T+GLIMGGANRR EAERL KGV+I++ATPGRLLDHLQNTKGF+ RNL   V+DEAD                             RILEQGFE+D+  IIK LPK RQTMLFSATQTKK+EDL R ++    V+V    + ++AT  GLEQGYV  PSD+RFLLLFTFLK+NK +KIMVFFSSCNSVKFHAELLNYID+P MDIHGRQKQQ+RTTTFFQFC+Q KG LLCTDVAARGLDIPAVDWIIQ+DPPDDP+EYIHRVGRTARG  G GRALLFLT EE GFL+YL+AAKV LNEYEFP KK+ANVQ+QL +L+EKNYYLN +ARDAYRSYLLAYASHS +DIFNVHELDL AV RAFGF+ PPRVD+  S KGPK R  N    K  G T     GH FSA+NPYG++ A D RQF+
Sbjct:   84 GSSNERKKQKKEFFAADSFTSLPLSDNTQSALATMGFTQMTKIQSLSIPALLSGKDLIGAAKTGSGKTLAFLLPVVELLHNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCTNGKHHQTYGLIMGGANRRTEAERLAKGVNIIIATPGRLLDHLQNTKGFVFRNLLAFVMDEADVRIVLFGVKYSWCYDDSHRLTTATIVPPKRILEQGFEDDLRAIIKILPKQRQTMLFSATQTKKIEDLARTAIDKSAVYVEVPSDTSLATAEGLEQGYVTVPSDQRFLLLFTFLKKNKNKKIMVFFSSCNSVKFHAELLNYIDIPCMDIHGRQKQQKRTTTFFQFCKQSKGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGDEGTGRALLFLTPEETGFLRYLKAAKVTLNEYEFPMKKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYASHSLRDIFNVHELDLSAVGRAFGFTAPPRVDLAFSMKGPKARRHNGQVTKGKGKTGKLANGHAFSASNPYGKKSAKDKRQFS 625          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|223998424|ref|XP_002288885.1| (atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] >gi|220975993|gb|EED94321.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0
Identity = 354/499 (70.94%), Postives = 410/499 (82.16%), Query Frame = 0
Query:  244 NQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRP-VFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFG-----STGHKFSANNPYGRREAGDSRQFT 736
            +  F  LP+SD T+ AL  + F  MT IQ+++IP LL+GKD++ AAKTGSGKTLAFL+PVVELL   K+ +RNGTGAI+ISPTREL+MQIYGV +DLC  G H  T+GLI+GGANRR EAERL KGV+I++ATPGRLLDHLQNTKGF+ RNL   V+DEADRILEQGFE+D+  IIK+LPK RQTMLFSATQTKKVEDL R ++  +  V+V    E  +AT  GLEQGYV  PSD+RFLLLFTFLK+NK +KIMVFFSSCNSVKFH+ELLNYID+PVMDIHGRQKQQ+RTTTFFQFC+Q  G LLCTDVAARGLDIPAVDWIIQ+DPPDDP+EYIHRVGRTARG  GKGRALLFLT EE GFL+YL+AAKV LNEYEFP  K+ANVQ+QL +L+EKNYYLN +ARDAYRSYLLAY SHS +DIF+VH LDL AV RAFGF+ PPRVD+  S KGPK R  N       G     + GH FSA+NPYGR+E+GD RQF+
Sbjct:   19 DNTFASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGAAKTGSGKTLAFLLPVVELLHNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCTSGKHHQTYGLIIGGANRRTEAERLAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEDDLRSIIKALPKQRQTMLFSATQTKKVEDLARTAIDPKSAVYVEVPNETNLATAAGLEQGYVTVPSDQRFLLLFTFLKKNKNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQTTGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGEKGKGRALLFLTPEETGFLRYLKAAKVTLNEYEFPMTKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYTSHSLRDIFDVHSLDLAAVGRAFGFTAPPRVDLAFSVKGPKARRHNGQVMNGKGKNGKLANGHSFSASNPYGRKESGDKRQFS 517          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|219119904|ref|XP_002180703.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408176|gb|EEC48111.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 372/609 (61.08%), Postives = 447/609 (73.40%), Query Frame = 0
Query:  129 NRRTEEELNEEESDGEEMQENGVIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAKKARKGVDEKSGTALPETPRPEAGSGEGKGSGGGAGKSGAVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGR-PVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFT 736
            N++T +E  +     EE      + ++   SEE   + E   + E ED    ++RS   +     P+ S+  K  +    + G    E P   A S                   +  FE+LP+S+ TK  L  L F  MT IQS AIPPLL GKD++ AAKTGSGKTLAFL+P +ELL K K+ ++NGTG I+ISPTREL+MQIYGVL++LC  G H  T+GLIMGGANRR E+ERL KGV+++V TPGRLLDHLQNTK F+ RNL  LV+DEADRILEQGFE+D+  I+K LPK RQTMLFSATQTKKVEDL RLS+  +  VFV    +  +AT  GLEQGYV CPSDKRFLLLFTFLK+NK++KIMVFFSSCNSVK+HAELLNYID+PVMDIHGRQKQ +RTTTFFQFC+ D G +LCTDVAARGLDIP VDWIIQ+DPPDDP+EYIHRVGRTARGA G GRALLFLT EE GFL+YL+AAKV LNEY+FP  KVANVQ+QL +L+E NYYLN+++RDAYRSYLLAYASHSH+DIFNVHELDLQAV  AFGF+ PPRVD+    +  K ++    K  R   +GH FSA+NPYG+R+A D RQF+
Sbjct:    5 NKKTRKEAKDLNPVTEEATSEEAVAKHEPTSEEAVAKHEPTTE-EEEDVSMKKKRSVSTSSNDEQPTESKKAKTEQVDSNEDG----EKPNFYAES------------------KDDTFENLPLSEKTKYGLNDLGFTRMTQIQSKAIPPLLTGKDLIGAAKTGSGKTLAFLIPCIELLHKAKFTSKNGTGVIVISPTRELAMQIYGVLQELCTHGKHSQTYGLIMGGANRRTESERLAKGVNVIVCTPGRLLDHLQNTKAFVFRNLLALVMDEADRILEQGFEDDLRSILKLLPKERQTMLFSATQTKKVEDLARLSINPKNSVFVDIPSDTNLATAAGLEQGYVTCPSDKRFLLLFTFLKKNKKKKIMVFFSSCNSVKYHAELLNYIDVPVMDIHGRQKQVKRTTTFFQFCKSDIGTMLCTDVAARGLDIPRVDWIIQFDPPDDPKEYIHRVGRTARGAKGSGRALLFLTPEETGFLRYLKAAKVTLNEYDFPTTKVANVQSQLYRLIESNYYLNRASRDAYRSYLLAYASHSHRDIFNVHELDLQAVGVAFGFTTPPRVDLAFGKEKRKKKVDG--KTARLAGSGHAFSADNPYGKRDASDRRQFS 588          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|570313957|gb|ETO61905.1| (hypothetical protein F444_20137 [Phytophthora parasitica P1976])

HSP 1 Score: 735.332 bits (1897), Expect = 0.000e+0
Identity = 345/502 (68.73%), Postives = 414/502 (82.47%), Query Frame = 0
Query:  241 FFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDK-------RFGSTGHKFSANNPYGRREAGDSRQF 735
            +F+++ F  LP+S++T+ AL  + F  MT IQS +I PLLAG+D++ AAKTGSGKTL+FL+P VELL KV++ AR GTG I+ISPTREL++QIYGV+RD+C    H  THG++MGGANRRAEAERLVKGV+IL++TPGRLLDHLQNTK F+  NLQ+LVIDEADRIL  GFEE+M QIIK +PK RQTMLFSATQTKKVEDL RLS++ +PV+VG  EE   ATV  LEQGYVV PSDKRFLLLFTFLK+N ++K+MVFFSSC++VKF+ ELLNYID+PV+DIHG+QKQ +RTTTFFQFC    GILLCTDVAARGLDIPAVDWIIQ+DPPDDPREYIHRVGRTARGA GKG+ALL L  +E+GFLKYL+A+KVALNEYEFP  K+ANV++QL KLVEK YYL+KSA+DAYR YLLAYASHS K IF+V  LDLQ VA++FG  VPP+V + + + G  G+ K T  D        +F  +GH FSA+NPYG+R AGD RQF
Sbjct:  102 YFSSEEFASLPLSESTRKALADMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVELLHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKY--HSQTHGIVMGGANRRAEAERLVKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTFLKKNLKKKVMVFFSSCSAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGILLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLKYLKASKVALNEYEFPVSKIANVESQLMKLVEKTYYLHKSAKDAYRGYLLAYASHSLKGIFDVGRLDLQGVAKSFGLQVPPKVTLPVKTNGKTGKRKGTSFDNDGSSRGGKFQRSGHAFSADNPYGKRAAGDKRQF 601          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|567947709|gb|ETK73483.1| (hypothetical protein L915_19586 [Phytophthora parasitica] >gi|567976389|gb|ETL26913.1| hypothetical protein L916_19477 [Phytophthora parasitica] >gi|570937743|gb|ETP03000.1| hypothetical protein F441_20003 [Phytophthora parasitica CJ01A1] >gi|570968032|gb|ETP31151.1| hypothetical protein F442_19952 [Phytophthora parasitica P10297])

HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0
Identity = 345/502 (68.73%), Postives = 413/502 (82.27%), Query Frame = 0
Query:  241 FFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDK-------RFGSTGHKFSANNPYGRREAGDSRQF 735
            +F+++ F  LP+S+ T+ AL  + F  MT IQS +I PLLAG+D++ AAKTGSGKTL+FL+P VELL KV++ AR GTG I+ISPTREL++QIYGV+RD+C    H  THG++MGGANRRAEAERLVKGV+IL++TPGRLLDHLQNTK F+  NLQ+LVIDEADRIL  GFEE+M QIIK +PK RQTMLFSATQTKKVEDL RLS++ +PV+VG  EE   ATV  LEQGYVV PSDKRFLLLFTFLK+N ++K+MVFFSSC++VKF+ ELLNYID+PV+DIHG+QKQ +RTTTFFQFC    GILLCTDVAARGLDIPAVDWIIQ+DPPDDPREYIHRVGRTARGA GKG+ALL L  +E+GFLKYL+A+KVALNEYEFP  K+ANV++QL KLVEK YYL+KSA+DAYR YLLAYASHS K IF+V  LDLQ VA++FG  VPP+V + + + G  G+ K T  D        +F  +GH FSA+NPYG+R AGD RQF
Sbjct:  102 YFSSEEFASLPLSEPTRKALADMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVELLHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKY--HSQTHGIVMGGANRRAEAERLVKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTFLKKNLKKKVMVFFSSCSAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGILLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLKYLKASKVALNEYEFPVSKIANVESQLMKLVEKTYYLHKSAKDAYRGYLLAYASHSLKGIFDVGRLDLQGVAKSFGLQVPPKVTLPVKTNGKTGKRKGTSFDNDGSSRGGKFQRSGHAFSADNPYGKRAAGDKRQF 601          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|675210649|ref|XP_008914209.1| (hypothetical protein PPTG_17988 [Phytophthora parasitica INRA-310] >gi|566010258|gb|ETI33169.1| hypothetical protein F443_20123 [Phytophthora parasitica P1569] >gi|568005882|gb|ETL80160.1| hypothetical protein L917_19317 [Phytophthora parasitica] >gi|568035780|gb|ETM33408.1| hypothetical protein L914_19352 [Phytophthora parasitica] >gi|568085634|gb|ETN00538.1| hypothetical protein PPTG_17988 [Phytophthora parasitica INRA-310] >gi|970662347|gb|KUF99742.1| ATP-dependent RNA helicase HAS1 [Phytophthora nicotianae])

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 345/502 (68.73%), Postives = 413/502 (82.27%), Query Frame = 0
Query:  241 FFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDK-------RFGSTGHKFSANNPYGRREAGDSRQF 735
            +F+++ F  LP+S+ T+ AL  + F  MT IQS +I PLLAG+D++ AAKTGSGKTL+FL+P VELL KV++ AR GTG I+ISPTREL++QIYGV+RD+C    H  THG++MGGANRRAEAERLVKGV+IL++TPGRLLDHLQNTK F+  NLQ+LVIDEADRIL  GFEE+M QIIK +PK RQTMLFSATQTKKVEDL RLS++ +PV+VG  EE   ATV  LEQGYVV PSDKRFLLLFTFLK+N ++K+MVFFSSC++VKF+ ELLNYID+PV+DIHG+QKQ +RTTTFFQFC    GILLCTDVAARGLDIPAVDWIIQ+DPPDDPREYIHRVGRTARGA GKG+ALL L  +E+GFLKYL+A+KVALNEYEFP  K+ANV++QL KLVEK YYL+KSA+DAYR YLLAYASHS K IF+V  LDLQ VA++FG  VPP+V + + + G  G+ K T  D        +F  +GH FSA+NPYG+R AGD RQF
Sbjct:  102 YFSSEEFASLPLSEPTRKALADMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVELLHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKY--HSQTHGIVMGGANRRAEAERLVKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTFLKKNLKKKVMVFFSSCSAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGILLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLKYLKASKVALNEYEFPVSKIANVESQLMKLVEKTYYLHKSAKDAYRGYLLAYASHSLKGIFDVGRLDLQGVAKSFGLQVPPKVTLPVKTNGKTGKRKGTSFDNDGSSRGGKFQRSGHAFSADNPYGKRAAGDKRQF 601          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|1214711405|gb|OWZ22418.1| (ATP-dependent RNA helicase [Phytophthora megakarya])

HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 343/502 (68.33%), Postives = 414/502 (82.47%), Query Frame = 0
Query:  241 FFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDK-------RFGSTGHKFSANNPYGRREAGDSRQF 735
            +F+++ F  LP+S+ T+ AL  + F  MT IQS +I PLLAG+D++ AAKTGSGKTL+FL+P VELL KV++ AR GTG I+ISPTREL++QIYGV+RD+C    H  THG++MGGANRRAEAERLVKGV+IL++TPGRLLDHLQNTK F+  NLQ+LVIDEADRIL  GFEE+M QIIK +PK RQTMLFSATQTKKVEDL RLS++ +PV+VG  EE   ATV  LEQGYVV PSDKRFLLLFTFLK+N ++K+MVFFSSC++VKF+ ELLNYID+PV+DIHG+QKQ +RTTTFFQFC    GILLCTDVAARGLDIPAVDWIIQ+DPPDDPREYIHRVGRTARGA GKG+ALL L  +E+GFLKYL+A+KVALNEYEFP  K+ANV++QL KLVEK YYL+KSA+DAYR YLLAYASHS K++F+V  LDLQ VA++FG  VPP+V + + + G  G+ K T  D        +F  +GH FSA+NPYG+R +GD RQF
Sbjct:   86 YFSSEEFASLPLSEPTRKALADMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVELLHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKY--HSQTHGIVMGGANRRAEAERLVKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTFLKKNLKKKVMVFFSSCSAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGILLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLKYLKASKVALNEYEFPVSKIANVESQLMKLVEKTYYLHKSAKDAYRGYLLAYASHSLKNLFDVARLDLQGVAKSFGLQVPPKVTLPVKTNGKAGKRKGTSFDNDGSSRGGKFQRSGHAFSADNPYGKRASGDKRQF 585          
BLAST of EWM26104.1 vs. NCBI_GenBank
Match: gi|669149630|ref|XP_008610377.1| (hypothetical protein SDRG_06376 [Saprolegnia diclina VS20] >gi|530738029|gb|EQC36271.1| hypothetical protein SDRG_06376 [Saprolegnia diclina VS20])

HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 341/498 (68.47%), Postives = 414/498 (83.13%), Query Frame = 0
Query:  239 AVFFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHE-EAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGRLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQF 735
            +V+F+++ FE LP+S+ T+  LK + FV +T IQS +I PLLAG D++ AAKTGSGKTL+FL+P +ELL KVK+ AR GTG I+ISPTREL++QIYGV++++     H  THG++MGGANRRAEAERLVKGV+IL+ATPGRLLDHLQNTKGF+  NLQ+ VIDEADRIL  GFEE+M QIIK +PK RQTMLFSATQTKKVEDL ++S+QG PV+VG  + E A ATV  LEQGYVV PSDKRFLLLFTFLK+N  +K+MVFFSSCN+VKF+ ELLNYID+PV+DIHG+QKQ +RTTTFFQFC    GILLCTDVAARGLDIPAVDWIIQYDPPDDP+EYIHRVGRTARGA G G+ALL L  EE+GFLKYL+AAKVAL+EY+FP KKVANV+ QL KLVEK YYL+KSA++AYRSYLLAYASH  K+IF+V  LDL AVA++FG +VPP+V + + + G +G+ K   ++ ++  +GH FSA NPYG+R   D RQF
Sbjct:   22 SVYFSDETFESLPLSEPTQRVLKEMNFVKLTKIQSKSIRPLLAGSDLLGAAKTGSGKTLSFLIPSIELLYKVKFTARKGTGCIVISPTRELALQIYGVVKEITKY--HTQTHGIVMGGANRRAEAERLVKGVNILIATPGRLLDHLQNTKGFIFHNLQIFVIDEADRILSIGFEEEMRQIIKCIPKTRQTMLFSATQTKKVEDLIKVSIQGTPVYVGVDDVENAEATVQTLEQGYVVTPSDKRFLLLFTFLKKNLNKKVMVFFSSCNAVKFYGELLNYIDVPVLDIHGKQKQNKRTTTFFQFCSAKSGILLCTDVAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGATGAGKALLMLLPEELGFLKYLKAAKVALSEYDFPTKKVANVENQLMKLVEKTYYLHKSAKEAYRSYLLAYASHGLKNIFDVGTLDLPAVAKSFGLTVPPKVTLPVKTNGKEGKRK---REDKYSKSGHAFSAENPYGKRAKDDKRQF 514          
The following BLAST results are available for this feature:
BLAST of EWM26104.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108098|gb|EWM26104.1|0.000e+0100.00RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
gi|298705993|emb|CBJ29114.1|0.000e+069.73DEAD box helicase [Ectocarpus siliculosus][more]
gi|397639861|gb|EJK73804.1|0.000e+067.34hypothetical protein THAOC_04552 [Thalassiosira oc... [more]
gi|223998424|ref|XP_002288885.1|0.000e+070.94atp-dependent RNA helicase [Thalassiosira pseudona... [more]
gi|219119904|ref|XP_002180703.1|0.000e+061.08predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|570313957|gb|ETO61905.1|0.000e+068.73hypothetical protein F444_20137 [Phytophthora para... [more]
gi|567947709|gb|ETK73483.1|0.000e+068.73hypothetical protein L915_19586 [Phytophthora para... [more]
gi|675210649|ref|XP_008914209.1|0.000e+068.73hypothetical protein PPTG_17988 [Phytophthora para... [more]
gi|1214711405|gb|OWZ22418.1|0.000e+068.33ATP-dependent RNA helicase [Phytophthora megakarya... [more]
gi|669149630|ref|XP_008610377.1|0.000e+068.47hypothetical protein SDRG_06376 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4550rna4550Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications