rna4549, rna4549 (mRNA) Nannochloropsis gaditana

Overview
Namerna4549
Unique Namerna4549
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1500
Alignment locationCM002463.1:890765..892457 -

Link to JBrowse

Properties
Property NameValue
Productchaperone protein
Orig transcript idgnl|cribi|Naga_100014g27.9260.mrna
Orig protein idgnl|cribi|Naga_100014g27.9260
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:890765..892457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g27gene4390Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26083.1cds4537Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4549rna4549-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4549 ID=rna4549|Name=rna4549|organism=Nannochloropsis gaditana|type=mRNA|length=1500bp
TGTCTTTTTCCCTGAGATGATCAAAACCTCACGTGCACGACTTCTCAACA
CCAGAGGTCCATATAGGATGGCGTCTTTGTCCTCTTTTAGGAGGATAGAT
CGACCAGTAACGACATCAGTACCAAAACAATATGATATCTCTTCATCAAT
TCCTACAGTTCCACCTAGAGCACCGGGCACGAAGCCTTGGATAAATGGCA
ACACCCTAATTTCGTCGGGGAACAGGGACCTGGACAGCGTCTTGGGGGGG
GGGATATGTCTGGGCACAGTGACGCTTGTTGAAGAGGATCGCTTTTCGGA
CCATGCCTTGGTTTTATCGAAATATTTTCTTGCTCAGGGCGTAAGTGGAA
TGCATCAATGCCTGGTGATAGGTGCTGAGGGCAGTAAGGCGGCGCTTCAA
AAGACTTTCGTTGTCCAGCTTCCATTTGATCTAACGTACAAAAAAAATCA
GCAAGAGCAACAAGAGCGAGAAGACAGACCATGTACAGGAGGAAGCGATC
CATCGTCCGCTCTACCGACGAGGCCCCTGTCCACCTTCTCCAGGGAATTG
GGCGACTCGTTGCCCTCGGTGGGGGGGCCGCGCCATGACCCCCTGAGCAT
CGCGTGGCAGTACCGGAAGTACATCAACACACCGACACCGCCCCCAAGAG
GATCGGCTTCTACCGCACCCGCTTCCTCCTCATTTTGCAACAGCTACGAC
CTGAGCCGAGACATTCAGCCGGAAGTTCTGGCAGCGGCAGCGCCGCCGGT
GGTGGTGGATGTGAGCGAAGAGGAAGAAGGGCAGCAAGAGCCCTCCTCCG
CATGCTCTCGCGTGTATCAGTCGGTGGCTAGTGCCATCAAGTCCCTTCCA
GAGAACACTGTTCTTCGCGTGGTCATCAAGTCCTTTTTGACCAAGACGGG
CGCCTGGGCGTCGGCCCACGAGGGAGAGCCCCTCCTCCTCCTCCATTCCC
TGCGCCGGCTCATCCGCCATCACCCTGTGGCCATTTTTGTGACCCTCTCC
GCCCACCATGTCCCACAGCGCCAGCGCCGACTCCTCGCGCGCGTGGCAGA
CACGGTCCTAGAGCTACAGTCCTTCGCTGGGCACCGGCATCGCACGGCCC
CCGAGTTCGAGGCCTTCGCCGGCTTCCTCCATATCAAGGCACTGCAGCAT
TTGAATGCGTTGGCCCCTATCAGGGGGCCGTCCAACAAGCTCGGCGTGAA
GCGGGACCGGCGAAAGCTGCACATTGAGCCGCTCCACCTCCCCCCCGAGG
GAGTGCGGACCTTGACGGAGGACGTGGAGATGCAGAAGCGGGGGAGGAGG
AGGAAGGAGGAGAGGGGGGGGGACCGGGGGGAGAGGGGAAAACCGGCGGT
CTAGTCCCGGGGATGATGTGTGCCACGAGCGGGCGGGGCGGGCATGGCGC
GTCGCTCGACTTCTAGAGAAAGGATCGACGCATGGGCACAGAGGAGAGGG
GGGGGAGGCTCTTACGCTGAGGGCTTGAAAAGAAGGCAGAAGGTGACTTG
back to top

protein sequence of rna4549

>rna4549-protein ID=rna4549-protein|Name=rna4549|organism=Nannochloropsis gaditana|type=polypeptide|length=461bp
MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLN
YLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMR
VKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFK
QVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSS
SSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGF
LEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLR
EKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKD
LEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNT
GERGERVGGEMRGRPPPRRRRGRAPGTGERGGGAPEAEEGNGSVRSPWVA
RKGGEEDQGFA
back to top

mRNA from alignment at CM002463.1:890765..892457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4549 ID=rna4549|Name=rna4549|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp|location=Sequence derived from alignment at CM002463.1:890765..892457- (Nannochloropsis gaditana)
GCCAGGACAAAGGGTCTGAGCGCAGGATGTATCTTTGGCCGCCCTCGCCG
ACCTCCCCCCTCAGGCCCCCGCTCCTTGCACTGACGCGCCTGCCGTACTC
ACACGACAACCGGTCGATAGGTTTTCCGCCGTAGTGTACATGCCGTCTGT
GAAGACAGGAGGAGATCACGAGCTTTCACGGCGGAAGCGTAAAAGTACCC
TTTTGACCTCGCTTCATGCTGCAAACCTTTGCTGCTTCGGTTCTGCCTTC
TTCCTCGTTGTCATCAGTCCAACATGGTGCCATCTCAATTATTTGGCCAA
CGCTTTCGTGCCATTGGTGTACAGCGGGAAATGTCAGCTCCACAACTTCA
GAGCCGCTTCGTCGGCAGGCACTATGGGGCCCCAGCTTTGTGCACGACCC
CGTCGTGCAGCACAGCGTGTGGGGGCGATAGCGATGCGCGTGAAATTCGA
CGTAAAAAAGGATTACTATGCCCGCCTTGACATCGAGAAATCGGCCTCAC
TCAACGATATCAAGCGTGCGTACCGACGGCTGGCCCTGCAGACACACCCC
GACGTGAACAAGGCCCCCGACGCCGCCGAGACCTTCAAGCAGGTTTGTGA
GGCCTACAAGGTGCTCTCGGACGCCGAGGCCCGCAAGGGATACGACCTGG
CCAGGGGTATGCAAGGGTCAGGGTTTGGCAGTGGGGGCAGGCGGTGGACT
AACGTGGGTGGGCGGGGCACGGCCTCCTCCTCTTCCTCCTCCTCGAGAGG
GTGGTACGACCAATATGGTCCGTTCGGGGGGGGTGCGCCGGGCGCGAACG
AGGAGACTGCGGAGAGCATAGACGACAGTTTCAGCAGCATATTCCGAGAT
TTTGTGGGTAACGTAGGGAGCAATGGAGGGCGGGGTTTCCTTGAGGACGT
GGTCAGCTTCCTGGAGAGCAACGTGGACGGGTTCAGCGAGGAGAGCGACG
CGGAGTTTGAAGAGATTTTGAAGGGCGAGGATCTGCAGCTGGTACAGGAC
GAGATCGAGAACCTGAACTTTCTGATCCCCAAGCTCCGGGAGAAGCAGCA
GCAGGCAAAGATCGACGTGATGGTCGCGCAAGGCAAGCTCAGGACCCTGC
AAGCAGCCGCGGCCCGGGACCTCGAAGGTGTGGACCGGCAGCTGGAGGCG
GTGGAGAAAGTGGCGGCCACGCAGGCGCGCGTGAAGGACTTAGAGGGGCA
CATGAAGCGGGCGGACAAGCGGCAGCGGCGGCTGATGCTGCGCGCAGAGG
AGTTGAGGTGGGGGGCGGGGGGAAGGTCCGCTTACTCGAAATATGCGTCG
CCGGGAACGAAAGGAAGCGCAAGTTCTCGGAGCAATACGGGGGAGAGAGG
GGAGAGGGTGGGGGGAGAGATGCGGGGCCGTCCTCCTCCTCGTCGGCGTC
GGGGGCGGGCCCCGGGCACAGGGGAACGTGGAGGAGGAGCTCCAGAGGCT
GAAGAGGGAAATGGGTCTGTGAGGTCGCCCTGGGTGGCGAGGAAAGGGGG
GGAGGAGGACCAGGGGTTTGCGTGACAATGAGCAGCAGCCGGCAAATATT
TTGGAATGTGTGAGTGCGGGGGGCTGGGAGAGGGAGTCGGTGTGACATAG
AGGGGGGAACCTGAGCACACCGTGCGTGCCGCGCGGGGTTCGTGTAAATT
ACGCGATCATGGAAAAAGAAACCACCTGACATTCATACCCGCA
back to top

Coding sequence (CDS) from alignment at CM002463.1:890765..892457-

>rna4549 ID=rna4549|Name=rna4549|organism=Nannochloropsis gaditana|type=CDS|length=1386bp|location=Sequence derived from alignment at CM002463.1:890765..892457- (Nannochloropsis gaditana)
ATGCCGTCTGTGAAGACAGGAGGAGATCACGAGCTTTCACGGCGGAAGCG
TAAAAGTACCCTTTTGACCTCGCTTCATGCTGCAAACCTTTGCTGCTTCG
GTTCTGCCTTCTTCCTCGTTGTCATCAGTCCAACATGGTGCCATCTCAAT
TATTTGGCCAACGCTTTCGTGCCATTGGTGTACAGCGGGAAATGTCAGCT
CCACAACTTCAGAGCCGCTTCGTCGGCAGGCACTATGGGGCCCCAGCTTT
GTGCACGACCCCGTCGTGCAGCACAGCGTGTGGGGGCGATAGCGATGCGC
GTGAAATTCGACGTAAAAAAGGATTACTATGCCCGCCTTGACATCGAGAA
ATCGGCCTCACTCAACGATATCAAGCGTGCGTACCGACGGCTGGCCCTGC
AGACACACCCCGACGTGAACAAGGCCCCCGACGCCGCCGAGACCTTCAAG
CAGGTTTGTGAGGCCTACAAGGTGCTCTCGGACGCCGAGGCCCGCAAGGG
ATACGACCTGGCCAGGGGTATGCAAGGGTCAGGGTTTGGCAGTGGGGGCA
GGCGGTGGACTAACGTGGGTGGGCGGGGCACGGCCTCCTCCTCTTCCTCC
TCCTCGAGAGGGTGGTACGACCAATATGGTCCGTTCGGGGGGGGTGCGCC
GGGCGCGAACGAGGAGACTGCGGAGAGCATAGACGACAGTTTCAGCAGCA
TATTCCGAGATTTTGTGGGTAACGTAGGGAGCAATGGAGGGCGGGGTTTC
CTTGAGGACGTGGTCAGCTTCCTGGAGAGCAACGTGGACGGGTTCAGCGA
GGAGAGCGACGCGGAGTTTGAAGAGATTTTGAAGGGCGAGGATCTGCAGC
TGGTACAGGACGAGATCGAGAACCTGAACTTTCTGATCCCCAAGCTCCGG
GAGAAGCAGCAGCAGGCAAAGATCGACGTGATGGTCGCGCAAGGCAAGCT
CAGGACCCTGCAAGCAGCCGCGGCCCGGGACCTCGAAGGTGTGGACCGGC
AGCTGGAGGCGGTGGAGAAAGTGGCGGCCACGCAGGCGCGCGTGAAGGAC
TTAGAGGGGCACATGAAGCGGGCGGACAAGCGGCAGCGGCGGCTGATGCT
GCGCGCAGAGGAGTTGAGGTGGGGGGCGGGGGGAAGGTCCGCTTACTCGA
AATATGCGTCGCCGGGAACGAAAGGAAGCGCAAGTTCTCGGAGCAATACG
GGGGAGAGAGGGGAGAGGGTGGGGGGAGAGATGCGGGGCCGTCCTCCTCC
TCGTCGGCGTCGGGGGCGGGCCCCGGGCACAGGGGAACGTGGAGGAGGAG
CTCCAGAGGCTGAAGAGGGAAATGGGTCTGTGAGGTCGCCCTGGGTGGCG
AGGAAAGGGGGGGAGGAGGACCAGGGGTTTGCGTGA
back to top
Synonyms
Publications