EWM26083.1, cds4537 (CDS) Nannochloropsis gaditana

Overview
NameEWM26083.1
Unique Namecds4537
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:890933..892318 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26083.1
Productchaperone protein
Orig transcript idgnl|cribi|Naga_100014g27.9260.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:890933..892318 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Homology
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|585108077|gb|EWM26083.1| (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 941.414 bits (2432), Expect = 0.000e+0
Identity = 461/461 (100.00%), Postives = 461/461 (100.00%), Query Frame = 0
Query:    1 MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLNYLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMRVKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNTGERGERVGGEMRGRPPPRRRRGRAPGTGERGGGAPEAEEGNGSVRSPWVARKGGEEDQGFA 461
            MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLNYLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMRVKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNTGERGERVGGEMRGRPPPRRRRGRAPGTGERGGGAPEAEEGNGSVRSPWVARKGGEEDQGFA
Sbjct:    1 MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLNYLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMRVKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNTGERGERVGGEMRGRPPPRRRRGRAPGTGERGGGAPEAEEGNGSVRSPWVARKGGEEDQGFA 461          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|553181798|ref|XP_005853628.1| (chaperone protein, partial [Nannochloropsis gaditana CCMP526] >gi|553196462|ref|XP_005856349.1| chaperone protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292703|gb|EKU20005.1| chaperone protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295432|gb|EKU22731.1| chaperone protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 419.853 bits (1078), Expect = 2.574e-144
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLNYLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMRVKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSS 201
            MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLNYLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMRVKFDVKKDYYARLDI+KSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSS
Sbjct:    9 MPSVKTGGDHELSRRKRKSTLLTSLHAANLCCFGSAFFLVVISPTWCHLNYLANAFVPLVYSGKCQLHNFRAASSAGTMGPQLCARPRRAAQRVGAIAMRVKFDVKKDYYARLDIDKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSS 209          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|553181801|ref|XP_005853629.1| (heat shock protein 40 like protein domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|553196474|ref|XP_005856353.1| heat shock protein 40 like protein domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292707|gb|EKU20009.1| heat shock protein 40 like protein domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295433|gb|EKU22732.1| heat shock protein 40 like protein domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 407.912 bits (1047), Expect = 1.173e-139
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0
Query:  206 YDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNTGERGERVGG 409
            YDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGR FLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNTGERGERVGG
Sbjct:    1 YDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRSFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNTGERGERVGG 204          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|298709079|emb|CBJ31027.1| (Heat shock protein 40 like protein/ DnaJ domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 132.109 bits (331), Expect = 5.801e-31
Identity = 93/265 (35.09%), Postives = 144/265 (54.34%), Query Frame = 0
Query:  113 LDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTA----------------SSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLEDVV-SFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAA----RDLEGVDRQLEAVEKVAATQARVKDLEGHMK 356
            L+I ++A  ++IKRAYRR AL+THPDVN AP A E   +V  AY+VLSD + R  Y+  R      F +  RR    G                     ++   ++R W +Q              T + I DSF  IFRD VG + S GG G + + V  FLE+ VDGFS ++  EFE+++   +LQ +++E+EN  FL+ +L+ K ++  ID + A+ ++  ++A        D++ +DRQ+ A+EK A  +AR  +L+GH+K
Sbjct:   69 LEIPETADQSEIKRAYRRKALKTHPDVNTAPTAKEDLAEVVNAYEVLSDEKKRASYNTRRK-----FANPFRRGGGGGAGAAGSGGGGGAAAWGSSTYNAAREEAARRWREQ------------NPTPDEIGDSFGDIFRDLVGGIASVGGGGGVLNDVVDFLENQVDGFSSDTSLEFEDLMASRNLQEMKEELENTRFLLEQLKMKSRKLGIDKLAAEKEVVAMKAGGGSRRFTDIDELDRQMSAIEKAAGIKARYDELQGHVK 316          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|544210161|ref|XP_005535482.1| (similar to heat shock protein dnaJ [Cyanidioschyzon merolae strain 10D] >gi|449015794|dbj|BAM79196.1| similar to heat shock protein dnaJ [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 120.939 bits (302), Expect = 6.839e-27
Identity = 85/231 (36.80%), Postives = 114/231 (49.35%), Query Frame = 0
Query:   83 LCARPRRAA---------QR--VGAIAMR--VKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGS-----NGGRGFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFL 295
            + +RP RAA         QR  VG ++ R  V+FD  +DYYA L +E  A L  IKRAYRRLALQ HPD NK P A E F ++  AY+VLS+ +ARK YDL R   GSG   G      +GG G     SSS+                  EE  E ++DSF +IF D +  +G          G   D V FLES    +    + +   +L   D  ++Q E+++  F+
Sbjct:   31 IVSRPSRAAWSRKSLLVQQRSGVGTLSARSSVQFDPTEDYYAVLGVESDADLATIKRAYRRLALQNHPDANKDPQAREKFIRILRAYEVLSNEDARKQYDLQRRSPGSGPFWG------IGGPGAQRRRSSST------------------EEYPEDLNDSFGAIFSDLMEQLGRLWQEGTKENGIFADFVEFLESQGANWGSLRNEDLNSVLTSSDEDVLQAELDDARFV 237          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|546319940|ref|XP_005717156.1| (unnamed protein product [Chondrus crispus] >gi|507113727|emb|CDF37337.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 110.923 bits (276), Expect = 5.626e-23
Identity = 87/274 (31.75%), Postives = 131/274 (47.81%), Query Frame = 0
Query:  105 VKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRD-FVGNVGSNGGR---GFLEDVVSFLESNVDGF--------SEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQAAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLM 366
            +  D+Y  L I+++A+ + IKRAYRR AL+ HPDV+KAPDA E F +V EAY VLSD+  R  YD       S   S      + G        +  ++ W +Q  P             + ++DSF SIF D F G  G+  G    G ++D V FLE+ VDGF        S++ D    +ILK  D+ ++Q EI++ +F++ +L  +Q +   +    Q +    +  A R    +D       K      R  DL+   KR   R R+ +
Sbjct:  110 LSSDFYEILGIDRNANNSTIKRAYRRAALKNHPDVSKAPDAKERFMRVQEAYSVLSDSSTRASYDRRSQSGYSSSSSSAWPGGSAGPNFDP---TEFAKKWREQ-NPM-----------PKDLNDSFGSIFSDLFSGVAGAASGATRPGIMDDFVDFLENQVDGFGVDSSGYASDDEDDGLSDILKSSDVDVLQAEIDDAHFVLQQLETRQSKLDEEAASLQKRADEWRVRANRAEGSMDYTTRDTAK-----ERASDLKAEAKRFSSRSRKTL 363          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|503027638|ref|WP_013262614.1| (J domain-containing protein [gamma proteobacterium HdN1] >gi|301797913|emb|CBL46135.1| Curved DNA-binding protein [gamma proteobacterium HdN1])

HSP 1 Score: 90.1225 bits (222), Expect = 3.158e-16
Identity = 50/93 (53.76%), Postives = 57/93 (61.29%), Query Frame = 0
Query:  105 VKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYD--------------LARGMQGSGFGSGG 183
            V KDYY+ L + + AS  DIK+AYRRLA Q HPD NKAPDA E FK V EAY+VLSDAE R  YD                 G +GSGFG+ G
Sbjct:    2 VSKDYYSTLGVARDASAADIKKAYRRLARQYHPDKNKAPDAEEHFKAVGEAYEVLSDAEKRAAYDQFGSDGFGGGGAHGWQSGARGSGFGADG 94          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|391326321|ref|XP_003737666.1| (PREDICTED: dnaJ homolog subfamily B member 4 isoform X1 [Galendromus occidentalis])

HSP 1 Score: 89.3521 bits (220), Expect = 6.497e-16
Identity = 60/147 (40.82%), Postives = 79/147 (53.74%), Query Frame = 0
Query:  107 KDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLED 253
            KD YA L++ KSASL +IK++YRRLAL+ HPD NK+PDAAE F++VC AY+VLS+ E R  YD         FG  G R   VGG G    S +S+R +           P +        D+ F + F     N+G  GG    +D
Sbjct:    7 KDLYAVLEVPKSASLEEIKKSYRRLALKYHPDKNKSPDAAEKFREVCSAYEVLSNKEKRDTYD--------RFGEDGLRQGGVGGNGAGGRSGTSTRFY-------TSTDPMSTFTQFFGTDNPFENFF-----NLGRGGGFSTFDD 133          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|391326319|ref|XP_003737665.1| (PREDICTED: dnaJ homolog subfamily B member 4 isoform X2 [Galendromus occidentalis])

HSP 1 Score: 88.9669 bits (219), Expect = 8.000e-16
Identity = 60/147 (40.82%), Postives = 79/147 (53.74%), Query Frame = 0
Query:  107 KDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRWTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLED 253
            KD YA L++ KSASL +IK++YRRLAL+ HPD NK+PDAAE F++VC AY+VLS+ E R  YD         FG  G R   VGG G    S +S+R +           P +        D+ F + F     N+G  GG    +D
Sbjct:    3 KDLYAVLEVPKSASLEEIKKSYRRLALKYHPDKNKSPDAAEKFREVCSAYEVLSNKEKRDTYD--------RFGEDGLRQGGVGGNGAGGRSGTSTRFY-------TSTDPMSTFTQFFGTDNPFENFF-----NLGRGGGFSTFDD 129          
BLAST of EWM26083.1 vs. NCBI_GenBank
Match: gi|1125134589|gb|OLA94733.1| (hypothetical protein BHW64_02240 [Candidatus Melainabacteria bacterium LEY3_CP_29_8])

HSP 1 Score: 87.4261 bits (215), Expect = 3.030e-15
Identity = 51/136 (37.50%), Postives = 73/136 (53.68%), Query Frame = 0
Query:  107 KDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYD-LARGMQGSGFGSGGRR--WTNVGGRGTASSSSSSSRGWYDQYGPFGGGAPGANEETAESIDDSFSSIFRDFV 239
            KDYY  L ++K A+   IK AYR+LA + HPDV+K   A++ FK++ EAY+VLSD E R+ YD L    Q  G+GS   +  W        +S S++ ++G +  +G FGG              D F +IF D  
Sbjct:    4 KDYYKILGVDKKATQTQIKSAYRKLAKKYHPDVDKTKAASDKFKEINEAYEVLSDKEKRERYDNLGSNWQNMGYGSNANQGGWEQFYQNAGSSRSNTYTQGDFSSFGQFGG------------FSDFFKTIFGDMT 127          
The following BLAST results are available for this feature:
BLAST of EWM26083.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108077|gb|EWM26083.1|0.000e+0100.00chaperone protein [Nannochloropsis gaditana][more]
gi|553181798|ref|XP_005853628.1|2.574e-14499.50chaperone protein, partial [Nannochloropsis gadita... [more]
gi|553181801|ref|XP_005853629.1|1.173e-13999.51heat shock protein 40 like protein domain containi... [more]
gi|298709079|emb|CBJ31027.1|5.801e-3135.09Heat shock protein 40 like protein/ DnaJ domain co... [more]
gi|544210161|ref|XP_005535482.1|6.839e-2736.80similar to heat shock protein dnaJ [Cyanidioschyzo... [more]
gi|546319940|ref|XP_005717156.1|5.626e-2331.75unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|503027638|ref|WP_013262614.1|3.158e-1653.76J domain-containing protein [gamma proteobacterium... [more]
gi|391326321|ref|XP_003737666.1|6.497e-1640.82PREDICTED: dnaJ homolog subfamily B member 4 isofo... [more]
gi|391326319|ref|XP_003737665.1|8.000e-1640.82PREDICTED: dnaJ homolog subfamily B member 4 isofo... [more]
gi|1125134589|gb|OLA94733.1|3.030e-1537.50hypothetical protein BHW64_02240 [Candidatus Melai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4549rna4549Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications