rna4542, rna4542 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4542
Unique Name	rna4542
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2558
Alignment location	CM002463.1:875306..876769 +

Link to JBrowse

Properties


Property Name	Value
Product	methionine adenosyltransferase beta
Orig transcript id	gnl\|cribi\|Naga_100014g19.9285.mrna
Orig protein id	gnl\|cribi\|Naga_100014g19.9285
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:875306..876769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g19	gene4383	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4542	rna4542-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26108.1	cds4530	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:875306..876769+
coding sequence from alignment at CM002463.1:875306..876769+

mRNA sequence

>rna4542 ID=rna4542|Name=rna4542|organism=Nannochloropsis gaditana|type=mRNA|length=2558bp
AAGACAAGGCTGTGGCGAAGTCAGGCAATAGATGCCTCTAACCGAGACAC
AAATCGTTATCGGAATGAATCGGTGTCCGGCTCGGATATGTGATAAATGC
GTTGTCGGCCAGGTGTGGAAATAAGGGCGCGTCGATGATAGATAAGGCTG
TGAGGTATCCAAACAACCTCCCTGCGCAACCCAGTACATCGCATCTTTAC
GTCGCGGGCTTGTACCGCCTGGGCCATGCACACTCATCCTTGCGCACTTG
CGCTGTATAAACAGGACTTTCTTCCTTCTTAAGCTTTCTATCGTCGTCGT
CATGTCTGGCAAGGAAACCCTCAAAAGTCTGGCAAGCAAGATCGATCTCA
AGAATCAACGTGTCTTCTGTCGAGTGGACTTCAATGGTACGTCTTACTGG
TCTGGAGTCATGAGGATCTACGTGCGGTCACTCCCAACCCTGACCGCTTC
CCCACTTCCCCTCTCTCCTGTCACAGTTCCCCTCGACAAAGAGGCGAAAG
TCACGGACGATACGCGCATCCGCGCTGCCCTCCCCACCATCAAGTTTCTC
GTGGTACGTACTTCACCACAGTGTTGGCTCTTCGGCCTCCATGTTATGGT
CTCCAGCCGTAAAGGAATCTTGTGCCCTGCCTGCGCCCGCCTGTTCAGCA
GCTCTTCTGGTGTTTCCAATCAAAGCACAGTGAATGCGCTTTTGGTAGGT
CTATTCAACTATCTAGAATACCTCACACGCGACCTTCCACTCCCCCGTGT
TGCCAACCCCGGACAGGAGAAAGGCGCCCGAGTCGTCCTCTGCAGCCACC
TGGGCCGCCCCAAAGGCGTTACCGAGTCCTTGCGCATGGCGCCCGTGGCC
ACCCGCCTCTCTGAGTTGCTGGGTTCCGAGGTGAAGTACGTGAAGGATTG
CGTGGGAGAGGAGGTTGAGCAGCAAGTGGAAGCCCTCTCTGCGGGCCAGG
TCCTCCTGCTCGAAAACGTTCGTTTCTACAAGGAGGAGGAGAAGAACGCG
CCGGAGTTCGCGGCTAAACTTGCGCGTTTGGCGGATGTGTATGTCAACGA
CGCCTTTGGGACGGCTCACCGCGCGCATGCCTCCACGGAGGGCATTGCCA
AGCTGGTGAAGACGACGTGCGCGGGTTTTTTGATGGAGAAGGAGCTGTCC
TACCTGGATGGGGCCGTGTCCAAGCCCACGCGGCCCTTTGCGGCGATTGT
CGGGGGGTCAAAGGTAAGAACGAGAGGCAAGCGATGGCGTCTCATCAGAC
GTTCGGAAGGAGTGTGGTGCTACTCGTGGCGTGTCTGGGCGAATATTGAG
TGCCGCCGACTCGTCTGCTCCGCGTTTCTTTCTCTCCGTGGGTCCCCTCG
ACGATGGGTCGCAGACGCCAGTTATTGTGATGCCAATCTTGACTTGCGGG
AAATGCATCTCGTTATAGCCCACTGCTGAATGTACACCCCCCCGACCCCG
CCCTGGGTCATCTCGTTTCGACCCTGCAGGTCTCCACGAAGATTACGGTG
GTGGAGACTCTGATCAACAAGGTGGACAAGCTCATTATCGGCGGCGGCAT
GGTGTTCACATTCCTCAAGGCTCAAGGGCACGGTGTGGGCTCCTCGCTCG
TGGAGGAAGATTTCTTGGAACTCGCGAAGAAACTGGAGTCCATGGCGAAA
GAGAAGGGTGTGAAGCTCATTCTTCCCACCGACGTGGTAATTGCCGACAA
ATTCTCGGCGGACGCGCAGAGTAAGGTCGTGCCTGCCACGGAGATCCCCG
ACGGTTGGATGGGCCTGGACAACGGCCCCGAGACGACCAAGATGATCCAG
GCGGAGCTGGCGGATTGCAAGACCATCATTTGGAACGGGCCCATGGGGGT
GTTCGAATTTGAAAAGTTCGCGGCGGGGACTTCGGCCATCGCAAAGACAT
TGGCAGAGCTGACTTCGAAGGGGGCGACCACTATCGTCGGCGGCGGGGAC
TCCGTGGCGGCGGTGGAGCAAGCGGGCCTGGCGGATAAGCTGTCTCACGT
GTCGACGGGTGGGGGGGCGTCCCTGGAGATGCTAGAGGGTCGCACGCTGC
CCGGCGTCGCTGCGATCCAAGATGCTCAGTGAAAAGATACCGAAAGGAGA
CCAGGATTCTCCCGGCAGAAAGCGGTACGTGGCTCCAGATTATGAACTAG
ATATAGGTGGCAATTGCCGGGCTCGCAGAGAGGAAGATCCGGCAAATGGG
ATTCGATCCATGAATGGGCATTGGCTGACATTTATACGAAATGTATGACC
AGATTCAAGTTTTGTTGATGTTCTTGCGAAGAATTTGAAAAAAGTGTTTG
AGAGAGGAGCACTTTTGAAAGGCGTCATCTGTGTTAAAGGCTGCACGAGA
GATGTTCTGGGGGATGGTTATCCAGGCTATTTACGATCACAAACTTTTTC
GCATCATTTCCTCTTGAACAGTTTTTTGTTTCGTTATTTGCTTCACATAC
CGATGCAATTGCATCATGATTTGGTGATTGAGCATCTGACAGCTCGGCAG
ATAGGTTTTCCTCACCCCTTCCTACTTGGATAAGTTGTACTGTCACTGCA
CTACTCCC

protein sequence of rna4542

>rna4542-protein ID=rna4542-protein|Name=rna4542|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MPAAINPPVVLVLGASGLLGRAVQHTLLESLPHGVVVAGTGHSRARGLIP
CDVTDETTLREFLAAQAPRVVVNCVAERRPDVVEKEDAKAHVLNVRLVEI
LAEESARLGFYLLHISTDYVFDGTKPPYKPGDDPHPLNAYGEQKLASEKV
LRGKDSGERACAILRVPVLYGPSADLAESSVTLLARDVLVPPRSSQKKVD
DWAARYATHTEDVARVVTAMVDRALTGAGELRGTFHYSSKERSQDLSRGA
GGEERSQDLSRGVGGEQCPGQGGGRAYTKYSISVLIGEVLGRATKHLEPE
ASPPEGAPRPQDCELDISALQEALGEKVTRSRALRDGLREVLQGILGETS
DS

mRNA from alignment at CM002463.1:875306..876769+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4542 ID=rna4542|Name=rna4542|organism=Nannochloropsis gaditana|type=mRNA|length=1464bp|location=Sequence derived from alignment at CM002463.1:875306..876769+ (Nannochloropsis gaditana)
ATGCCGGCAGCCATCAACCCCCCCGTGGTTCTCGTCTTGGGCGCCTCGGG
CTTACTCGGTCGTGCTGTACAGCACACACTACTCGAATCACTACCTCACG
GCGTCGTGGTCGCTGGGACTGGACATTCGCGGGCACGCGGCCTGATACCC
TGCGACGTTACCGATGAGACGACTTTACGCGAATTTCTGGCGGCTCAAGC
GCCTCGGGTCGTCGTAAATTGTGTGGCAGAGCGACGGCcagacgtggtgg
agaaggaggatgccaAAGCTCACGTCTTAAACGTGCGCTTGGTGGAAATA
TTGGCCGAGGAAAGTGCGCGACTGGGTTTCTATTTGCTGCACATCTCGAC
GGATTACGTCTTCGACGGGACGAAACCACCTTACAAGCCAGGAGACGACC
CTCACCCACTCAATGCGTACGGCGAACAAAAACTTGCGTCAGAAAAGGTC
CTCAGAGGAAAGGATTCAGGAGAGCGGGTGCGTCCGGGGCAGGGGTCacg
ggaggaaaaacagGGGGGATGGGACAAAGTGTGGACCGAAGGTACTCGCA
TAGAATCATCAATTACACGTCACGCAAAAGAACCTCTCCTGACACAGCCT
GTGCCTGTCTTTCGCTCTCTCTTTGAATGTCTTGCTCTTAGGCCTGCGCC
ATCCTCCGTGTCCCAGTCCTCTACGGCCCAAGCGCCGATCTGGCTGAGTC
TTCCGTCACGCTCCTCGCACGCGACGTCCTCGTGCCCCCGCGGTCCTCGC
AGAAGAAGGTGGACGATTGGGCTGCTCGGTACGCCACGCAcacggaggac
gtggcccgCGTGGTGACGGCCATGGTGGATCGGGCCTTgaccggggcggg
ggagtTGCGCGGCACCTTCCACTACAGCAGCAAGGAGCGGTCTCAGGACC
TCTCccggggagcaggaggcgaggagcggTCTCAGGACCTCTCCCGGGGA
GTAGGAGGCGAGCAATGCCccggacaagggggggggcgggcataCACGAA
GTACAGCATCAGCGTGCTGATAGGAGAGGTGTTGGGGAGAGCGACGAAGC
ACCTGGAGCCGGAGGCAAGCCCGCCTGAGGGGGCTCCTCGACCCCAGGAC
TGTGAGTGCGTGGATCGTGGGACGGGGGGTGCGGGGTGATGGGCGCGCGT
GGGATGTATGGGCAGGCATGGGCGAAGGGGTAGGGGCCATGGTGGATGAC
GAGCTTCTTCCAGGAGGACCGTCCCTCGTCCCGCGCGCTTTTAACGGACG
AGTCTGCGTGTTGATGCCTTGTGCGCCTGCCCGATCATccattccctttc
cctttcattcccctcgccccctgcccTGCCACCGTCCCATAGGTGAGCTG
GATATATCCGCTTtgcaggaggcgctgggcgAGAAGGTGACCAGGTCCCG
GGCCCTCCGCGACGGTTTGAGAGAGGTCTTGCAGGGTATTCTAGGCGAAA
CGAGTGACTCATGA

Coding sequence (CDS) from alignment at CM002463.1:875306..876769+

>rna4542 ID=rna4542|Name=rna4542|organism=Nannochloropsis gaditana|type=CDS|length=3177bp|location=Sequence derived from alignment at CM002463.1:875306..876769+ (Nannochloropsis gaditana)
ATGCCGGCAGCCATCAACCCCCCCGTGGTTCTCGTCTTGGGCGCCTCGGG
CTTACTCGGTCGTGCTGTACAGCACACACTACTCGAATCACTACCTCACG
GCGTCGTGGTCGCTGGGACTGGACATTCGCGGGCACGCGGCCTGATACCC
TGCGACGTTACCGATGAGACGACTTTACGCGAATTTCTGGCGGCTCAAGC
GCCTCGGGTCGTCGTAAATTGTGTGGCAGAGCGACGGCcagacgtggtgg
agaaggaggatgccaAAGCTCACGTCTTAAACGTGCGCTTGGTGGAAATA
TTGGCCGAGGAAAGTGCGCGACTGGGTTTCTATTTGCTGCACATCTCGAC
GGATTACGTCTTCGACGGGACGAAACCACCTTACAAGCCAGGAGACGACC
CTCACCCACTCAATGCGTACGGCGAACAAAAACTTGCGTCAGAAAAGGTC
CTCAGAGGAAAGGATTCAGGAGAGCGGGCCTGCGCCATCCTCCGTGTCCC
AGTCCTCTACGGCCCAAGCGCCGATCTGGCTGAGTCTTCCGTCACGCTCC
TCGCACGCGACGTCCTCGTGCCCCCGCGGTCCTCGCAGAAGAAGGTGGAC
GATTGGGCTGCTCGGTACGCCACGCAcacggaggacgtggcccgCGTGGT
GACGGCCATGGTGGATCGGGCCTTgaccggggcgggggagtTGCGCGGCA
CCTTCCACTACAGCAGCAAGGAGCGGTCTCAGGACCTCTCccggggagca
ggaggcgaggagcggTCTCAGGACCTCTCCCGGGGAGTAGGAGGCGAGCA
ATGCCccggacaagggggggggcgggcataCACGAAGTACAGCATCAGCG
TGCTGATAGGAGAGGTGTTGGGGAGAGCGACGAAGCACCTGGAGCCGGAG
GCAAGCCCGCCTGAGGGGGCTCCTCGACCCCAGGACTGTGAGCTGGATAT
ATCCGCTTtgcaggaggcgctgggcgAGAAGGTGACCAGGTCCCGGGCCC
TCCGCGACGGTTTGAGAGAGGTCTTGCAGGGTATTCTAGGCGAAACGAGT
GACTCATGAATGCCGGCAGCCATCAACCCCCCCGTGGTTCTCGTCTTGGG
CGCCTCGGGCTTACTCGGTCGTGCTGTACAGCACACACTACTCGAATCAC
TACCTCACGGCGTCGTGGTCGCTGGGACTGGACATTCGCGGGCACGCGGC
CTGATACCCTGCGACGTTACCGATGAGACGACTTTACGCGAATTTCTGGC
GGCTCAAGCGCCTCGGGTCGTCGTAAATTGTGTGGCAGAGCGACGGCcag
acgtggtggagaaggaggatgccaAAGCTCACGTCTTAAACGTGCGCTTG
GTGGAAATATTGGCCGAGGAAAGTGCGCGACTGGGTTTCTATTTGCTGCA
CATCTCGACGGATTACGTCTTCGACGGGACGAAACCACCTTACAAGCCAG
GAGACGACCCTCACCCACTCAATGCGTACGGCGAACAAAAACTTGCGTCA
GAAAAGGTCCTCAGAGGAAAGGATTCAGGAGAGCGGGCCTGCGCCATCCT
CCGTGTCCCAGTCCTCTACGGCCCAAGCGCCGATCTGGCTGAGTCTTCCG
TCACGCTCCTCGCACGCGACGTCCTCGTGCCCCCGCGGTCCTCGCAGAAG
AAGGTGGACGATTGGGCTGCTCGGTACGCCACGCAcacggaggacgtggc
ccgCGTGGTGACGGCCATGGTGGATCGGGCCTTgaccggggcgggggagt
TGCGCGGCACCTTCCACTACAGCAGCAAGGAGCGGTCTCAGGACCTCTCc
cggggagcaggaggcgaggagcggTCTCAGGACCTCTCCCGGGGAGTAGG
AGGCGAGCAATGCCccggacaagggggggggcgggcataCACGAAGTACA
GCATCAGCGTGCTGATAGGAGAGGTGTTGGGGAGAGCGACGAAGCACCTG
GAGCCGGAGGCAAGCCCGCCTGAGGGGGCTCCTCGACCCCAGGACTGTGA
GCTGGATATATCCGCTTtgcaggaggcgctgggcgAGAAGGTGACCAGGT
CCCGGGCCCTCCGCGACGGTTTGAGAGAGGTCTTGCAGGGTATTCTAGGC
GAAACGAGTGACTCATGAATGCCGGCAGCCATCAACCCCCCCGTGGTTCT
CGTCTTGGGCGCCTCGGGCTTACTCGGTCGTGCTGTACAGCACACACTAC
TCGAATCACTACCTCACGGCGTCGTGGTCGCTGGGACTGGACATTCGCGG
GCACGCGGCCTGATACCCTGCGACGTTACCGATGAGACGACTTTACGCGA
ATTTCTGGCGGCTCAAGCGCCTCGGGTCGTCGTAAATTGTGTGGCAGAGC
GACGGCcagacgtggtggagaaggaggatgccaAAGCTCACGTCTTAAAC
GTGCGCTTGGTGGAAATATTGGCCGAGGAAAGTGCGCGACTGGGTTTCTA
TTTGCTGCACATCTCGACGGATTACGTCTTCGACGGGACGAAACCACCTT
ACAAGCCAGGAGACGACCCTCACCCACTCAATGCGTACGGCGAACAAAAA
CTTGCGTCAGAAAAGGTCCTCAGAGGAAAGGATTCAGGAGAGCGGGCCTG
CGCCATCCTCCGTGTCCCAGTCCTCTACGGCCCAAGCGCCGATCTGGCTG
AGTCTTCCGTCACGCTCCTCGCACGCGACGTCCTCGTGCCCCCGCGGTCC
TCGCAGAAGAAGGTGGACGATTGGGCTGCTCGGTACGCCACGCAcacgga
ggacgtggcccgCGTGGTGACGGCCATGGTGGATCGGGCCTTgaccgggg
cgggggagtTGCGCGGCACCTTCCACTACAGCAGCAAGGAGCGGTCTCAG
GACCTCTCccggggagcaggaggcgaggagcggTCTCAGGACCTCTCCCG
GGGAGTAGGAGGCGAGCAATGCCccggacaagggggggggcgggcataCA
CGAAGTACAGCATCAGCGTGCTGATAGGAGAGGTGTTGGGGAGAGCGACG
AAGCACCTGGAGCCGGAGGCAAGCCCGCCTGAGGGGGCTCCTCGACCCCA
GGACTGTGAGCTGGATATATCCGCTTtgcaggaggcgctgggcgAGAAGG
TGACCAGGTCCCGGGCCCTCCGCGACGGTTTGAGAGAGGTCTTGCAGGGT
ATTCTAGGCGAAACGAGTGACTCATGA

Synonyms

Publications