rna4537, rna4537 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4537
Unique Name	rna4537
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2631
Alignment location	CM002463.1:863935..865167 +

Link to JBrowse

Properties


Property Name	Value
Product	Hrf1
Orig transcript id	gnl\|cribi\|Naga_100014g15.9332.mrna
Orig protein id	gnl\|cribi\|Naga_100014g15.9332
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:863935..865167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g15	gene4379	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4537	rna4537-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26155.1	cds4525	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:863935..865167+
coding sequence from alignment at CM002463.1:863935..865167+

mRNA sequence

>rna4537 ID=rna4537|Name=rna4537|organism=Nannochloropsis gaditana|type=mRNA|length=2631bp
CCTGCAACAAGTCAAATACCACATACAACGCACAATATGCCCGCTCTCAC
GCACCACGAGCAGGAATGTTGTCATCATGGTCACAGCTATCGCTCACGCT
GTTCGCTTTGCTTCTGCTTGGGCATATATTTTGTAACAGACGACTTCTTT
CGCTTTTTTCTGTTGCTGCTGCCTTCCCGGATTGATTTCAGAAGTCCCAG
TAGACTTCCGCCATGCCCTCTACGCAAAGCAGCAAACGCAAGAGCAGCTC
TTCTGGCGGTGATTCGGCCACAAGCTGTCCACACTTAGAGAAAAAACGCA
TGTCGTCCCCGTCCTCGTCCGTCGCGGACGCTGCCGATGGGGCTACGTAT
CGTCAGGGTCGATCCGACGGGCCTGTGAAATGCACATGGACGCCTTGGAC
GACAGAAGCCTCCCCGCACATTCATGAGGCACGTCGACCTAAGCCTAAGA
TCTTGAACAACATTTTGGACCATATTGGAGACACGCCATTGGTGCGGATT
AACAATATCACTGCCTCGGAGGGCATCAAATGCGAGATTCTTGCCAAGTG
TGAGTTTTTTAATTCAGGGGGCTCTGTTAAAGACCGTATAGGCAAACGCA
TGATCGAGGACGCTGAGCGAAGCGGGCTTATCAAGCCAGGGGACACGTTG
ATCGAGCCCACGTCGGGAAACACAGGAATCGGGTTGGCCCTGGCGGCGGC
CATCAAGGGGTATCGAATGATCATTACCTTGCCCGAGAAAATGAGCCGTG
AAAAGGTCGACATCTTGAAGGCACTAGGGGCCGAAATCGTTCGCACACCC
ACAGAGGCTGCCTTCGACTCCCCCGACTCCCACATCGGCGTGGCCAAACG
CCTGCAGACCGAGATCCCGAATTCGCACATCCTCGATCAGTATGCCAATC
CGTCCAACCCCCTCGCCCACTACGACCACACCGCGGAAGAGCTCCTGGAG
CAAACCGACGGTCACATCGACTTCTTGGTGGTGTCGGCAGGCACAGGCGG
GACGCTGACGGGCACGGGTCGTAAGCTCAAGGAGCGGCTGCCCAACCTAA
CCATTGTGGGGGTGGACCCCGTAGGCTCGATTTTGGCGGAGCCCGACGCC
CTGAACGAGCGGGACCGTCTCACTTCGTACAAGGTGGAAGGCATCGGCTA
TGACTTCGTTCCTACGGTTCTGGACCGCGCGCTCGTGGACGAGTGGGTGA
AGACGGACGACAAGGAGTCTCTGCTCATGGCACGGCGTCTGATCCGAGAC
GAGGGCCTGCTCTGTGGGGGTTCCTGCGGTTCTGCCATGGCCGCCGCCGT
GCGTATCGCCAAGACCCTGCCGGTGGGCAAGCGCGTGGTAGTCCTGCTCC
CAGACTCGAGTCGAAACTACATGACCAAGCTCATTTCAGACAAGTGGATG
CTGGAGGCGGGCTTCGCGGACGGGCGGCTCATCGACCGCCCTCAGTACAA
AACGTGGTGGGCCAAGAAACGCGTGCAGGACCTGCACCTGCAGACCCCCA
TTACCATCGCGCCCGGCGTGTCGTGCAAGGAGGCGATCGGCTTGCTCTCG
GCCCAGGGTTTTGACACCCTGCCGGTCATCTCCGTAGACGGGAAGATCTT
GGGCGTGGTCACGGAGGGCAACTTGACAGCCAAGCTGGTGTCCAACCGGG
TGCAGCCTGACGACGACATCACGAGCGCGCTCTATCCCCAGTTCAGGAAG
GTGAACATGGGGGACACGCTCGGCGACCTCGCCAACATCTTCGACAGGGA
TCACTACGCCCTGGTGGTAGCAGAGCAGTTGCAGTACACGGGCGCCAAGG
GTGGCGCGGTCCCGGGGGCAAAGGGTCTACTGCCCTCCGCGACGCGGTCT
GTGGTGACGGGTGTAGCGACGCGGATTGATCTGCTGAATTACATTTCTTC
AACGCCAGTGGAGGAAGTGTTACCACAAGGCAGGGGGGAAGGACTGAAGG
ACTAGCTGGATGCAAGAATTCGGCGCCGAGAAGGAGAGCAAAGAACAAGG
GTTGATCACACATATTGCGGAGCGTCTCCCCTCCTCCCAGTTGTTTGTGC
ATACGGTTTCTATTACATAATTCTGGTGAATGTTTGAAGTTGTACAGGGG
TGTAGTCGGGTAGGGCATCTCAACGTGTGGCAGTATCGTCGATTTCAGTC
ACCGCAAAAAAAAATCTAGCGGAAGTAGTGCATGAAAAGCGTTGGTGGCA
TCTACGCGACAGCGGCAGTGGCCTTATATAAGCAGGCTATGGCGCCGACT
GAGGAAGATATGCAGTAGATTTCGGGAGAGAGCTCTGAAAAAAGTGTTTC
CTTTCTGTAAATTTGGCCGCGAATACGTGAGCAGTACGAGTAGGAATACA
AGGAGAATCGACTGTGCGTGCAGGGATCCGTTTCCATCGCAGTGCGGGCG
TGCACCGTGGCACAACAGAAAGTGTACAGTGGCGTTTCAAGCAAAGACAG
AGGAGGTTGGCCGACCTCCTTTCTTTGCCCTTTATCGGATCAGGACGCAT
CTTGAATACGTGAGAAAGAGAGCTCTGTGATTGAGGAAAACAAAAAACAA
AGGTCTCCGGTCAATGAGTTCGAAGCTCATACTCGGCTGTTTTCGGTCTC
TGTTTTTCTGCTGTATTCTTCCGGGTTTTCC

protein sequence of rna4537

>rna4537-protein ID=rna4537-protein|Name=rna4537|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MQQDGGQHWHQFPPQHANQDYSTQQQYGGHAQVPHAAHQQLQPGVNVFNP
GAYKQQQQAQQQQQEPQQQQEQFRRAPYGGGPPSSFGQGHQPNMDFGLNA
ITAAANSQAFSMGVGMGQEYLNASVSRYTPWVTSVWHGLKYYFAVNHHYV
KRKLFTLVFPYRKRHWRRQMKDSGAAGSSGAYGQQGGNADSASAMYRPQY
QVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTKNSFTPEVLVEVTSSCLV
MQLLEIAVIRLGLYLLQAPATLLDLLAVTGYKYVALNFNMVLGLNLGPRV
YLAAMVYTGLAMAYFSLKTFAQAVRLAGPRDLASAPVRVELMVLGFALMQ
FFSCVCVSEVGTPMAGVEELFDNVEPVTTGLSGRKNA

mRNA from alignment at CM002463.1:863935..865167+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4537 ID=rna4537|Name=rna4537|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp|location=Sequence derived from alignment at CM002463.1:863935..865167+ (Nannochloropsis gaditana)
ATGCAGCAGGATGGGGGGCAGCACTGGCATCAGTTCCCGCCTCAGCATGC
AAATCAGGATTACAGCACTCAGCAACAGTATGGCGGACATGCACAAGTCC
CTCACGCGGCCCACCAGCAGCTGCAACCGGGCGTGAACGTGTTTAATCCC
GGGGCCTataagcagcagcaacaagcgcaacaacagcaacaggaaccgca
gcagcagcaagagcagTTTCGTCGAGCTCCGTACGGAGGGGGGCCTCCGT
CAAGTTTCGGGCAAGGACACCAGCCCAACATGGACTTTGGCCTCAACGCC
AttacagcagcagcaaataGCCAAGCATTCAGCATGGGGGTGGGAATGGG
CCAAGAATACTTGAATGCGAGCGTGAGTCGGTACACTCCTTGGGTCACCT
CGGTGTGGCACGGTCTCAAATATTACTTCGCTGTCAACCACCACTACGTG
AAGCGGAAGCTCTTCactctcgtcttcccctACAGAAAGAGGCATTGGAG
AAGACAGATGAAAGACAGCGGAGCAGCAGGCAGCAGTGGGGCGTACGGGC
AACAAGGAGGCAACGCTGACTCGGCTAGTGCGATGTACCGTCCTCAGTAC
CAGGTCCCCATGCTGGATGAAAACGCCCCTGACTTGTACATTCCACTCAT
GGCATTTGTCACTTACGTGCTTGTTACTGGCTATGCGAAGGGCACCAAGA
ACTCTTTCACGCCCGAGGTTCTGGTGGAAGTAACGTCCTCGTGCTTAGTC
ATGCAGCTCTTGGAAATTGCCGTCATTCGTCTAGGGCTTTACCTTCTTCA
AGCCCCGGCAACCCTGCTCGATCTTTTGGCCGTCACCGGATACAAATATG
TGGCATTGAACTTCAACATGGTTTTAGGCCTCAATTTGGGTCCTCGCGTT
TACCTTGCGGCAATGGTCTATACCGGGCTGGCAATGGCGTATTTCTCTCT
CAAAACGTTTGCTCAAGCTGTTCGGTTAGCCGGGCCGCGTGATTTGGCCT
CGGCTCCTGTCCGTGTCGAATTGATGGTCCTTGGTTTTGCGTTGATGCAG
TTTTTCTCAGTTTGGTGGCTTGGTTATTCGGGTGATTTAAAAGCATCTGG
TTAAGTGTCGAGTCATCAAAAGGAATAGTGCGTATGTGTGAGTGAGGTCG
GAACTCCGATGGCTGGCGTCGAAGAGCTGTTTGATAACGTGGAGCCGGTT
ACAACTGGActgagcgggaggaaaaatgcatAA

Coding sequence (CDS) from alignment at CM002463.1:863935..865167+

>rna4537 ID=rna4537|Name=rna4537|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at CM002463.1:863935..865167+ (Nannochloropsis gaditana)
ATGCAGCAGGATGGGGGGCAGCACTGGCATCAGTTCCCGCCTCAGCATGC
AAATCAGGATTACAGCACTCAGCAACAGTATGGCGGACATGCACAAGTCC
CTCACGCGGCCCACCAGCAGCTGCAACCGGGCGTGAACGTGTTTAATCCC
GGGGCCTataagcagcagcaacaagcgcaacaacagcaacaggaaccgca
gcagcagcaagagcagTTTCGTCGAGCTCCGTACGGAGGGGGGCCTCCGT
CAAGTTTCGGGCAAGGACACCAGCCCAACATGGACTTTGGCCTCAACGCC
AttacagcagcagcaaataGCCAAGCATTCAGCATGGGGGTGGGAATGGG
CCAAGAATACTTGAATGCGAGCGTGAGTCGGTACACTCCTTGGGTCACCT
CGGTGTGGCACGGTCTCAAATATTACTTCGCTGTCAACCACCACTACGTG
AAGCGGAAGCTCTTCactctcgtcttcccctACAGAAAGAGGCATTGGAG
AAGACAGATGAAAGACAGCGGAGCAGCAGGCAGCAGTGGGGCGTACGGGC
AACAAGGAGGCAACGCTGACTCGGCTAGTGCGATGTACCGTCCTCAGTAC
CAGGTCCCCATGCTGGATGAAAACGCCCCTGACTTGTACATTCCACTCAT
GGCATTTGTCACTTACGTGCTTGTTACTGGCTATGCGAAGGGCACCAAGA
ACTCTTTCACGCCCGAGGTTCTGGTGGAAGTAACGTCCTCGTGCTTAGTC
ATGCAGCTCTTGGAAATTGCCGTCATTCGTCTAGGGCTTTACCTTCTTCA
AGCCCCGGCAACCCTGCTCGATCTTTTGGCCGTCACCGGATACAAATATG
TGGCATTGAACTTCAACATGGTTTTAGGCCTCAATTTGGGTCCTCGCGTT
TACCTTGCGGCAATGGTCTATACCGGGCTGGCAATGGCGTATTTCTCTCT
CAAAACGTTTGCTCAAGCTGTTCGGTTAGCCGGGCCGCGTGATTTGGCCT
CGGCTCCTGTCCGTGTCGAATTGATGGTCCTTGGTTTTGCGTTGATGCAG
TTTTTCTCATGCGTATGTGTGAGTGAGGTCGGAACTCCGATGGCTGGCGT
CGAAGAGCTGTTTGATAACGTGGAGCCGGTTACAACTGGActgagcggga
ggaaaaatgcatAAATGCAGCAGGATGGGGGGCAGCACTGGCATCAGTTC
CCGCCTCAGCATGCAAATCAGGATTACAGCACTCAGCAACAGTATGGCGG
ACATGCACAAGTCCCTCACGCGGCCCACCAGCAGCTGCAACCGGGCGTGA
ACGTGTTTAATCCCGGGGCCTataagcagcagcaacaagcgcaacaacag
caacaggaaccgcagcagcagcaagagcagTTTCGTCGAGCTCCGTACGG
AGGGGGGCCTCCGTCAAGTTTCGGGCAAGGACACCAGCCCAACATGGACT
TTGGCCTCAACGCCAttacagcagcagcaaataGCCAAGCATTCAGCATG
GGGGTGGGAATGGGCCAAGAATACTTGAATGCGAGCGTGAGTCGGTACAC
TCCTTGGGTCACCTCGGTGTGGCACGGTCTCAAATATTACTTCGCTGTCA
ACCACCACTACGTGAAGCGGAAGCTCTTCactctcgtcttcccctACAGA
AAGAGGCATTGGAGAAGACAGATGAAAGACAGCGGAGCAGCAGGCAGCAG
TGGGGCGTACGGGCAACAAGGAGGCAACGCTGACTCGGCTAGTGCGATGT
ACCGTCCTCAGTACCAGGTCCCCATGCTGGATGAAAACGCCCCTGACTTG
TACATTCCACTCATGGCATTTGTCACTTACGTGCTTGTTACTGGCTATGC
GAAGGGCACCAAGAACTCTTTCACGCCCGAGGTTCTGGTGGAAGTAACGT
CCTCGTGCTTAGTCATGCAGCTCTTGGAAATTGCCGTCATTCGTCTAGGG
CTTTACCTTCTTCAAGCCCCGGCAACCCTGCTCGATCTTTTGGCCGTCAC
CGGATACAAATATGTGGCATTGAACTTCAACATGGTTTTAGGCCTCAATT
TGGGTCCTCGCGTTTACCTTGCGGCAATGGTCTATACCGGGCTGGCAATG
GCGTATTTCTCTCTCAAAACGTTTGCTCAAGCTGTTCGGTTAGCCGGGCC
GCGTGATTTGGCCTCGGCTCCTGTCCGTGTCGAATTGATGGTCCTTGGTT
TTGCGTTGATGCAGTTTTTCTCATGCGTATGTGTGAGTGAGGTCGGAACT
CCGATGGCTGGCGTCGAAGAGCTGTTTGATAACGTGGAGCCGGTTACAAC
TGGActgagcgggaggaaaaatgcatAA

Synonyms

Publications