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Properties
| Property Name | Value |
|---|
| Product | 30s ribosomal protein s1 |
| Orig transcript id | gnl|cribi|Naga_100014g12.9274.mrna |
| Orig protein id | gnl|cribi|Naga_100014g12.9274 |
| Gene | rps1 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:858891..861042 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4535 ID=rna4535|Name=rna4535|organism=Nannochloropsis gaditana|type=mRNA|length=1512bp
TTGCTGCACCCACAGAAACAACTCTGCTCCCACGCACTCGAGCTACAACG
AGCCTGCCCTCGGACGGATAAGAACGAGGACCGGTTTTCGCGCCATATTT
CTCCACCCCTTGACCATGCCTCATTTACTACGACGTTTCTGGACTTAAAT
TCCGGGTGTGAGGTCTATCGCTGCATGTCGGTATAAATGCCCAATCTTTT
CACAAGTTTGAGACATTCTCAAGAGCTTGAGCTCCTTCTTTTCCTCCCTA
CAGTCCGTTCTTCGTCTCCAAGTCCTTTTAAATATCGCCTCCCCTCCACA
CTTCCTGACTCGCCCCCCTCTGACATGGAGGAAAGCAAACCCCCCAGACG
GATGAAAGGGGTCACCGTGTGCTTACCTATTGCCTACGGATCCATCGCCT
GGCACATGACGAAGAAAACCGAGCAAGACCAGTGCACCCATCAATGGACA
TTGTATGTACGAAGTCCTCATGGGCACGATCTTGGAGCAGTCCTGAAAAA
GACAGTATTCACTCTGCACTCCAGTTTTAACAACCACATTCGAGAGGCCA
GCGCCCACCCCTTCGAAGTGACGGAGAAGGGGTGGGGCGAGTTCGAGGCC
CTGATAGACGTCTACTTCAAAGATGCCCATGAGAAGTCCGTGGAGCTCCG
GCACTTCGTCAAACTCTTCCACGGAAATAGTGCCACGTCACAGCCGAACA
ACAAGAAGCCCGTGGTGCACGAGTACTACGACGAGGTCGTGTTCACAGAC
CCGACCGAGGAATTCTACCAGTGCCTCCAGCACTTGGGTGAGACTAAGAC
CCATCGACACACCCTGCAGGATTTGTTTCCCCTCTACAGCGACGTGGAGG
ACATCCGCCGCATCCAGGCGGCGCATGAATTCGTCACGGATCAGCTTCGA
ACTGCCAAAGACAAGCTCTTGCGCGTGGAGAGTGGGGCCAAGGCCTTGCT
TGAAGAAAGGAACGCAGCATCCCCCCCTCCCGGGCCTCCGCCAGCCAATG
GCCTCCCCACCGCCCCAGTGCCGGCGTCAGGGGCCGCTCCATCGACTTCC
GCCGAATCGACAGCCCCACCGCGCGATGCTCTTGTCTCCACAAGTTCTGG
CACGACTCAAACCATAAGTTCTCAGGCGTCAGTCCCTTCAGCGGCCCCTC
AAGGCCCCCCCTCCACCGCCCCCCAACCGATATCCACCGCACAGCAGGTA
CCATCAGCATCAAATTGAAATACGTGAGATACTGAATGGATAGTACGGTG
CGAAAAACTAAAATTGAAAATTACGAAGCGAATGGGGTTCTCAACGAGTA
TGGGACATTGAACGTACCCTCCGAGGACGTTTTTTAAATCACATTAAATG
GTTATTTTTCTCTCAGTTCCGGAGAAAAGATGGATGGCTCTAATTGCTTT
GTCTCCATATACCCTTTCTCAAGAAACTCATGGACTCACGGCCGTTTCAA
GAGCTTATCGACATGGAAAAGAGGGGGAATAGGCGGCTGTTTGTTGTCGC
CAACCCTCGTGG back to topprotein sequence of rna4535 >rna4535-protein ID=rna4535-protein|Name=rna4535|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MGRRTVILAAALPALGAAFLLPAGIRQSWVGKSQGPRQQGKLSMTRQGVQ
DKMERAFMKNAIMDKRSFGYTLVEAESEYDADFRPGQDEDDDVDGEAEVF
SPLELKAMYGEEYTGPFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYDNG
GALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGA
IMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFL
PGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMS
RGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQK
IKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHER
MEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDSDPLAGLDAFKMDPLA
GIQMEPIYTDKEGEK back to topmRNA from alignment at CM002463.1:858891..861042+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4535 ID=rna4535|Name=rna4535|organism=Nannochloropsis gaditana|type=mRNA|length=2152bp|location=Sequence derived from alignment at CM002463.1:858891..861042+ (Nannochloropsis gaditana)
TGCACTTGGCAATGGGTGCATGTTGCTCTATACCGAGTCCATATTATATC
TCGAGCCCTCGTCTTATTCTTTCGAAGCTGACGCTGGACAACCCGTGGAC
GAACGAATTGCTTTTTTTCGACGGCTGACATCGTGAgcttggaggcgatg
gaggggcagTATCTTTCACTCTCTCCCACGACACCCATTCGGAAGCTCGC
AGGTCCAAACTGAAAGGCTGCGGGACTTTGAAGTACCGTGGACTGTATAA
TTAATATGTGCATGACTTGTAGATGAAAGTGACTGGGCAAATGTTTGAAC
ATCACGACGTGAATATGCGCACCCACATGACTCgctctctgccccctcct
tctcccacgtAGGTGGCTTCGTACTTGCTGTCACCTTTTCGACAGAGGAT
ACAGCTATCAGCATCCATTCTGACCATGGGACGACGAACAGTGATACTGG
CCGCCGCGCTTCCTGCCCTTGGAGCGGCCTTCTTGTTGCCTGCAGGAATT
CGACAGTcatgggtgggaaagagcCAAGGACCACGGCAACAGGGGAAGCT
GTCCATGACGCGTCAGGGCGTACAGGACAAGATGGAGCGGGCTTTCATGA
AGAATGCTATCATGGATAAACGGTCGTTTGGGTACACactggtggaggca
gagtCAGAGTACGACGCAGATTTCCGGCCAGggcaggatgaggacgacga
cgtggacggggaggcggaggtttTCTCTCCTTTAGAGCTGAAGGCCATGT
ACGGCGAGGAGTATACCGGGCCCTTCAAGGAGGTAGACATTGGCTCGGGT
ATTGGAgacttctccttgccctcatACAGCAAGGGCGAGCTCATCAAGGG
CATCGTCTTGGAGTACGACAACGGCGGCGCCCTCGTGGATGTTGGGTCCA
AGGCACCTGCCTTCTTGCCCGGGCGCGAGGTGAGCATCAATCCCGCGGAC
AAGATGCAGGATATTGTCCGCCTGGATGAGGAGCTAGAGTTTCAGGTCAT
CTcggacggggacgaggacggggcgatCATGCTCTCCCTCAAGCGCATCC
AGTACGAGAAGACATGGGAGTCGCTTCTAAAACTCCAGGCAGCCGACGCG
TCCTTCAAGGGCACCGTGACGGGCGTGAATAAGGGAGGCGCCATCGTTCT
GGTGGAGGGCCTCCGGGCGTTTTTGCCGGGCTCCCATCTCTCCGGCGTGT
ACGCCGACGAGTCATTGGTCGGCCAGGTCTTACCCCTCAAGTTCCTGGAG
CTGAACAAGGAGAACGGAAAGCTGGTGGTGTCGCATCGTCGGGCCTTGGT
GGACTCGCAGATGGACAGCATGTCTCGCGgcgacgtggtggtgggcatgg
TGAAGCTTCTGAAGCCCTACGGTGCCTTTGTGGAGGTGAACGGGATGTCA
GGGCTGCTCCATATATCGCAAGTCTCGTACGACCGGGTGGAGGACCTCTC
CCTGGTGGTGCAGCCGGGGCAAAAGATCAAGTGCATGATCGTGGACCACG
ACAAGGTGAACGGGCGCATTGCCCTGAGCACCAAGACGCTGGAGCCTGAA
CCGGGAGACATGCTGCGAGACCGACAGAAGGTGTTTGACATGGCCGAGGT
GACCGCCAAGAAGTACCACGAGCgaatggaggcagagaggaaagcgcggg
aggaagcggccaaAGACATTGTGCTGGGCCTTAGCGAGGGACTGACGGGT
TTGGACGGCGGCTACGAGAACTTGGACTCGGACCCGTTGGCGGGCTTGGA
CGCGTTCAAGATGGACCCCCTGGCGGGCATCCAGATGGAGCCGATCTAca
cggacaaggagggcgagaagtAGGAGGTGGGGCGCCTGAACACGACAACT
AAATATGATCAAGGGCGGcctgaggaagagaggggcctAGCGGGCGAGGG
ATACCGGGGAGGGGTAGACAGTCAGAGGAACCCTGTGAGGTGTGGGCGAA
GAGGCTCACAGTGTGGGATGCGAAGCCATCAAGGGCTATGATAATTATCG
CAATAGTCACTGGAGCACCTGTGTATGTGCTCACCTGTCTATTTGGTCGG
ACGCGATGCGCGTGTGTGATAAAACGACCTGAAAAATGGTAGGAAAACCC
GGAAGAATACAGCAGAAAAACAGAGACCGAAAACAGCCGAGTATGAGCTT
CG back to topCoding sequence (CDS) from alignment at CM002463.1:858891..861042+ >rna4535 ID=rna4535|Name=rna4535|organism=Nannochloropsis gaditana|type=CDS|length=1398bp|location=Sequence derived from alignment at CM002463.1:858891..861042+ (Nannochloropsis gaditana)
ATGGGACGACGAACAGTGATACTGGCCGCCGCGCTTCCTGCCCTTGGAGC
GGCCTTCTTGTTGCCTGCAGGAATTCGACAGTcatgggtgggaaagagcC
AAGGACCACGGCAACAGGGGAAGCTGTCCATGACGCGTCAGGGCGTACAG
GACAAGATGGAGCGGGCTTTCATGAAGAATGCTATCATGGATAAACGGTC
GTTTGGGTACACactggtggaggcagagtCAGAGTACGACGCAGATTTCC
GGCCAGggcaggatgaggacgacgacgtggacggggaggcggaggtttTC
TCTCCTTTAGAGCTGAAGGCCATGTACGGCGAGGAGTATACCGGGCCCTT
CAAGGAGGTAGACATTGGCTCGGGTATTGGAgacttctccttgccctcat
ACAGCAAGGGCGAGCTCATCAAGGGCATCGTCTTGGAGTACGACAACGGC
GGCGCCCTCGTGGATGTTGGGTCCAAGGCACCTGCCTTCTTGCCCGGGCG
CGAGGTGAGCATCAATCCCGCGGACAAGATGCAGGATATTGTCCGCCTGG
ATGAGGAGCTAGAGTTTCAGGTCATCTcggacggggacgaggacggggcg
atCATGCTCTCCCTCAAGCGCATCCAGTACGAGAAGACATGGGAGTCGCT
TCTAAAACTCCAGGCAGCCGACGCGTCCTTCAAGGGCACCGTGACGGGCG
TGAATAAGGGAGGCGCCATCGTTCTGGTGGAGGGCCTCCGGGCGTTTTTG
CCGGGCTCCCATCTCTCCGGCGTGTACGCCGACGAGTCATTGGTCGGCCA
GGTCTTACCCCTCAAGTTCCTGGAGCTGAACAAGGAGAACGGAAAGCTGG
TGGTGTCGCATCGTCGGGCCTTGGTGGACTCGCAGATGGACAGCATGTCT
CGCGgcgacgtggtggtgggcatggTGAAGCTTCTGAAGCCCTACGGTGC
CTTTGTGGAGGTGAACGGGATGTCAGGGCTGCTCCATATATCGCAAGTCT
CGTACGACCGGGTGGAGGACCTCTCCCTGGTGGTGCAGCCGGGGCAAAAG
ATCAAGTGCATGATCGTGGACCACGACAAGGTGAACGGGCGCATTGCCCT
GAGCACCAAGACGCTGGAGCCTGAACCGGGAGACATGCTGCGAGACCGAC
AGAAGGTGTTTGACATGGCCGAGGTGACCGCCAAGAAGTACCACGAGCga
atggaggcagagaggaaagcgcgggaggaagcggccaaAGACATTGTGCT
GGGCCTTAGCGAGGGACTGACGGGTTTGGACGGCGGCTACGAGAACTTGG
ACTCGGACCCGTTGGCGGGCTTGGACGCGTTCAAGATGGACCCCCTGGCG
GGCATCCAGATGGAGCCGATCTAcacggacaaggagggcgagaagtAG back to top
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