EWM26097.1, cds4523 (CDS) Nannochloropsis gaditana

Overview
NameEWM26097.1
Unique Namecds4523
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:859316..860713 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26097.1
Product30s ribosomal protein s1
Orig transcript idgnl|cribi|Naga_100014g12.9274.mrna
Generps1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:859316..860713 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR022967S1_dom
IPR000110Ribosomal_S1
Homology
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|585108091|gb|EWM26097.1| (30s ribosomal protein s1 [Nannochloropsis gaditana])

HSP 1 Score: 935.25 bits (2416), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MGRRTVILAAALPALGAAFLLPAGIRQSWVGKSQGPRQQGKLSMTRQGVQDKMERAFMKNAIMDKRSFGYTLVEAESEYDADFRPGQDEDDDVDGEAEVFSPLELKAMYGEEYTGPFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDSDPLAGLDAFKMDPLAGIQMEPIYTDKEGEK 465
            MGRRTVILAAALPALGAAFLLPAGIRQSWVGKSQGPRQQGKLSMTRQGVQDKMERAFMKNAIMDKRSFGYTLVEAESEYDADFRPGQDEDDDVDGEAEVFSPLELKAMYGEEYTGPFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDSDPLAGLDAFKMDPLAGIQMEPIYTDKEGEK
Sbjct:    1 MGRRTVILAAALPALGAAFLLPAGIRQSWVGKSQGPRQQGKLSMTRQGVQDKMERAFMKNAIMDKRSFGYTLVEAESEYDADFRPGQDEDDDVDGEAEVFSPLELKAMYGEEYTGPFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDSDPLAGLDAFKMDPLAGIQMEPIYTDKEGEK 465          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|397620579|gb|EJK65790.1| (hypothetical protein THAOC_13316, partial [Thalassiosira oceanica])

HSP 1 Score: 385.185 bits (988), Expect = 4.921e-128
Identity = 193/344 (56.10%), Postives = 255/344 (74.13%), Query Frame = 0
Query:  113 YTGPFKEVDIGSGIGD---FSLPSY-----------SKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSI--NPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDG-----GYENLDS 435
            Y GP  +V+I SGI D   FS  S+           ++ +++ G V++YD GG +VD+G+K+ AFLP +E ++      ++++++ LD E EFQ+IS+ DE+G +++S++RI+Y + W+ ++  +  D  F      VN+GGAI LVEGLRAFLPGSHL+G   DE LVGQ LPLKFLE+N+E+ KLVVS+RRA+V++QM+S+SRGDV+ G+VK LKPYGAFVEV GMSGLLHISQ+S DR+ DL  V+QPGQKIKCMI+DHDK NGRIALSTKTLEPEPGDM+RD ++V++MAE TAK Y ER E ERK REE+AKDIVLGL + L  L G       +NLDS
Sbjct:   27 YKGP--KVEISSGIEDEVGFSYDSFEEAVSATDYSFNRNDVVTGTVVQYDKGGCVVDIGAKSSAFLPQQEAALVQEQGAQIENLIELDAEREFQIISEEDENGQLLVSVRRIEYRQAWDKVVAKRDTDEVFDAECVSVNRGGAIFLVEGLRAFLPGSHLTGRLPDEDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVETQMESLSRGDVIDGLVKALKPYGAFVEVGGMSGLLHISQISMDRINDLEAVLQPGQKIKCMIIDHDKANGRIALSTKTLEPEPGDMIRDPERVYEMAEETAKVYLERQEQERKKREESAKDIVLGLGDALDELTGDSAEDSSDNLDS 368          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|298708733|emb|CBJ30695.1| (Plastid ribosomal protein S1 [Ectocarpus siliculosus])

HSP 1 Score: 383.259 bits (983), Expect = 2.163e-126
Identity = 189/365 (51.78%), Postives = 259/365 (70.96%), Query Frame = 0
Query:   86 GQDEDDDVDGEAEVFSPLELKAMYGEEYTGPFKEVDIG---SGIGDFSL------PSYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDSDPLAGL 441
            G + + D+DG+     P         +Y G    +D+    +   DF         S+ +GE++KG V++++  GAL+D+G+KA A++P RE S++  + M+ ++ LDE ++  +ISD +E G + +S++RIQYEK W  +  +QA D  F+G +  VN+GGAIVLVEGLR FLPGSH+ G    E  VG+V+  KFLE+N EN KLVVS+RRA+++ +M  +SRGDVV G VK +KPYGAFVE+ GMSGLLHISQ+S+DR+EDL  ++Q G K+KCMI+DHDKVNGRIALSTKTLEPEPGDM+++ QKV+DMAE TA KYH+RME ERKARE+AAK IV+GL +GL       ++ DSD LAG+
Sbjct:   63 GTETEGDLDGDVSFVEPPNRFDKIKAQYKGVTTALDLSEETAAYEDFQTLLTDNKVSFERGEIVKGTVIQFEPSGALIDIGAKATAYMPAREASLDEVESMEGLLELDETMDVMIISDENEMGQVQVSIRRIQYEKAWSKVEDMQAEDVVFEGPIIAVNRGGAIVLVEGLRGFLPGSHMCGGLPTEDAVGKVMKYKFLEVNAENSKLVVSNRRAVLEQEMKELSRGDVVEGHVKAIKPYGAFVEIRGMSGLLHISQISFDRIEDLPSIMQMGMKLKCMIIDHDKVNGRIALSTKTLEPEPGDMIKNPQKVYDMAEATAAKYHQRMEHERKAREDAAKSIVMGLGDGL-------DSFDSDVLAGI 420          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|1072234341|gb|OEU19071.1| (small ribosomal protein S1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 362.459 bits (929), Expect = 1.446e-119
Identity = 167/275 (60.73%), Postives = 223/275 (81.09%), Query Frame = 0
Query:  133 SYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVS-INP-ADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAER 405
            S+ +  ++KG+ ++Y+  G +VD+G+KA A+LP  E + I P   ++ D+V L+EELEFQ+IS+ DE+G +++S++RIQY   W+++L+LQ+ DA  +  V  VN+GGAI LVEGLRAFLPGSHL+G  A + L+GQVLPLKFLE+N+EN KLVVS+R+A+V++QM  +SRGD+V G V+ LKPYGAF+EV GMSGLLHISQ+SYDR+EDL  V+QPG  +KCMI+DHDKVNGRIALSTKTLEP PGDML++ Q VFDMAE +A+KYH +ME ER
Sbjct:   36 SFERDAIVKGVCVQYEPKGVIVDIGAKASAYLPEAEAALIQPLGSEVADLVNLNEELEFQIISEEDENGQLLVSIRRIQYRSAWDTILELQSNDAILEAEVVSVNRGGAICLVEGLRAFLPGSHLAGKMATDDLIGQVLPLKFLEVNQENNKLVVSNRKAVVETQMADLSRGDLVEGTVQALKPYGAFIEVGGMSGLLHISQISYDRIEDLEQVLQPGMAVKCMIIDHDKVNGRIALSTKTLEPNPGDMLKNSQLVFDMAEASAEKYHTKMEEER 310          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|1210525780|dbj|GAX15386.1| (small subunit ribosomal protein S1 [Fistulifera solaris])

HSP 1 Score: 362.073 bits (928), Expect = 1.630e-118
Identity = 176/304 (57.89%), Postives = 232/304 (76.32%), Query Frame = 0
Query:  116 PFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYD-NGGALVDVGSKAPAFLPGREVSINPADK--MQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIV 416
            PF   D    +   +  ++ +  +++G+ +EY    G LVD+G+KA AFLP +E S+  AD   + D++ LD  + FQ+IS+ DE+G +++S+KRIQY++ WE +L L  +D   +  V  VN+GGAI L+EGLRAFLPGSHL+G   DESL+GQ L LKFLE+N+ENGKLVVS+R+A+V+ QM  +SRGD+V G+VK LKPYGAFVEV GMSGLLHISQ+SYDR++DL  V+QPG  +KCMI+DHDKVNGRIALSTKTLEPEPGDML++ Q V+D AE TA  YHE+MEA+R  RE+AA+DIV
Sbjct:   80 PFSYEDFAQAVS-VTEYAFERNSVVQGVAVEYSGEKGCLVDIGAKASAFLPAQESSLYMADNAGLSDVIPLDTPMNFQIISEEDENGQLIVSVKRIQYKEAWEKVLTLSESDEVVEAQVVAVNRGGAICLIEGLRAFLPGSHLAGQLPDESLIGQTLKLKFLEVNQENGKLVVSNRKAVVEQQMADLSRGDLVEGIVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMAVKCMIIDHDKVNGRIALSTKTLEPEPGDMLKNSQMVYDNAEQTAILYHEKMEAQRLEREKAARDIV 382          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|1210515326|dbj|GAX25778.1| (small subunit ribosomal protein S1 [Fistulifera solaris])

HSP 1 Score: 361.688 bits (927), Expect = 2.571e-118
Identity = 176/305 (57.70%), Postives = 233/305 (76.39%), Query Frame = 0
Query:  116 PFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYD-NGGALVDVGSKAPAFLPGREVSINPADK--MQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVL 417
            PF   D    +   +  ++ +  +++G+ +EY    G LVD+G+KA AFLP +E S+  AD   + D++ LD  + FQ+IS+ DE+G +++S+KRIQY++ WE +L L  AD   +  V  VN+GGAI L+EGLRAFLPGSHL+G   DESL+GQVL LKFLE+N+ENGKLVVS+R+A+V+ QM  +SRGD+V G+VK LKPYGAFVEV GMSGLLHISQ+SYDR++DL  V+QPG  +KCMI+DHDKVNGRIALSTKTLEPEPGDML++ Q V+D AE TA  YH++ME +R  RE+AA+DIV+
Sbjct:   80 PFSYEDFAQAVS-VTEYAFERNSVVQGVAVEYSGEKGCLVDIGAKASAFLPAQESSLYMADNAGLSDVIPLDTPMNFQIISEEDENGQLIVSVKRIQYKEAWEKVLTLSEADEVVEAQVVAVNRGGAICLIEGLRAFLPGSHLAGQLPDESLIGQVLKLKFLEVNQENGKLVVSNRKAIVEQQMADLSRGDLVEGIVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMAVKCMIIDHDKVNGRIALSTKTLEPEPGDMLKNSQMVYDNAEQTAILYHKKMEEQRLEREKAARDIVM 383          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|224006742|ref|XP_002292331.1| (RS1, ribosomal protein 1, partial [Thalassiosira pseudonana CCMP1335] >gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 338.961 bits (868), Expect = 3.405e-111
Identity = 156/270 (57.78%), Postives = 216/270 (80.00%), Query Frame = 0
Query:  133 SYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSI--NPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHER 400
            ++++ +++KG V++YD GG +VD+G+KA A+LP +E ++       ++ I+ +DEE +F++IS+ DE+G +++S++RIQY + W+ ++  Q +D  F+     VN+GGAI LVEGLRAFLPGSHL+G   D+ LVGQ LPLKFLE+N+E+ KLVVS+RRA+V+ QM  +SRGDV+ G+VK LKPYGAFVEV GMSGLLHISQ+S DR+ DL  V+QPGQKIKCMI+DHDKVNGRIALSTKTLEPEPGDM++D  +V++MA+ TA+ Y E+
Sbjct:   18 AFNRNDIVKGTVVQYDKGGCIVDIGAKASAYLPLQEATLFQEQGQSIEGIIDIDEERQFEIISEEDENGQLLVSIRRIQYREAWDKVIAKQDSDEVFEAECVSVNRGGAIFLVEGLRAFLPGSHLTGRLPDDDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVEEQMAELSRGDVIDGIVKALKPYGAFVEVGGMSGLLHISQISMDRITDLEQVLQPGQKIKCMIIDHDKVNGRIALSTKTLEPEPGDMIKDPARVYEMADETARVYLEK 287          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|219114931|ref|XP_002178261.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409996|gb|EEC49926.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 333.569 bits (854), Expect = 3.149e-109
Identity = 156/264 (59.09%), Postives = 204/264 (77.27%), Query Frame = 0
Query:  134 YSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKY 397
            + +  +++G  +EY   G LVD+G+KA A+LP +E S++    ++D V LD  +EFQ+IS+ DE+G +++S+KRI+Y+K WE +L +   D   +  V  VN+GGAI LVEGLRAFLPGSHL+G   DE L+G  L LKFLE+N+E  KLVVS+R+A+V+ QM  +SRGD+V GMVK LKPYGAFVEV GMSGLLHISQ+SYDR++DL  V+QPG ++KCMI+DHDKVNGRIALSTKTLEPEPGDML+D + VF+ AE TA  Y
Sbjct:   21 FERNAVVQGTAVEYSGSGCLVDIGAKASAYLPDQEASLDQDLNIEDAVPLDTPMEFQIISEEDENGQLLVSIKRIEYKKAWEKVLSMAEEDQILEAKVIAVNRGGAICLVEGLRAFLPGSHLTGQLPDEDLIGNNLQLKFLEVNQETNKLVVSNRKAVVEQQMADLSRGDLVAGMVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMQVKCMIIDHDKVNGRIALSTKTLEPEPGDMLKDPKMVFEKAEATAAAY 284          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|676393693|ref|XP_009040124.1| (hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens] >gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens])

HSP 1 Score: 335.495 bits (859), Expect = 1.835e-108
Identity = 168/308 (54.55%), Postives = 223/308 (72.40%), Query Frame = 0
Query:  133 SYSKGELIKGIVLEYDN-GGALVDVGSKAPAFLPGREVSINP---ADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVY-ADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDS 435
            S+  G+++ G V++YD    A+V+VG+K  A LP RE +I P    + +   V + E+ EFQ++SD  +DG + +S+K+I Y K WE+L +  A D  F+  +  VN+GGAIVLVEGLRAFLPGSH+ G   A E+++G+ +PLKFLE+N+E  KLVVS+RRA+++  M S+ RGDV  G V  +KPYGAFVE+ GMSGLLHISQ+SYDRVEDL   +  G  IKCM++DHDK  GRIALSTKTLEPEPGDMLRD  +VF +AE TA KYH R+EAE+ ARE+AAK++VLGL + L  L+   +  DS
Sbjct:   67 SFKNGDILTGTVVQYDGPQKAMVEVGAKTAAVLPLREATIAPLGDGETIATFVDVGEQYEFQIVSDSRDDGQVTVSIKKIMYAKAWETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASEAMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEIMGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEPGDMLRDPNRVFSLAEETAAKYHARVEAEKIAREQAAKEMVLGLGDSLDSLESVLDPSDS 374          
BLAST of EWM26097.1 vs. NCBI_GenBank
Match: gi|676393149|ref|XP_009039852.1| (hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens] >gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens])

HSP 1 Score: 334.724 bits (857), Expect = 3.711e-108
Identity = 166/300 (55.33%), Postives = 220/300 (73.33%), Query Frame = 0
Query:  133 SYSKGELIKGIVLEYDN-GGALVDVGSKAPAFLPGREVSINP---ADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVY-ADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLD 427
            S+  G+++ G V++YD    A+V+VG+K  A LP RE +I P    + +   V + E+ EFQ++SD  +DG + +S+K+I Y K WE+L +  A D  F+  +  VN+GGAIVLVEGLRAFLPGSH+ G   A E+++G+ +PLKFLE+N+E  KLVVS+RRA+++  M S+ RGDV  G V  +KPYGAFVE+ GMSGLLHISQ+SYDRVEDL   +  G  IKCM++DHDK  GRIALSTKTLEPEPGDMLRD  +VF +AE TA KYH R+EAE+ ARE+AAK++VLGL + L  L+
Sbjct:   67 SFKNGDILTGTVVQYDGPQKAMVEVGAKTAAVLPLREATIAPLGDGETIATFVDVGEQYEFQIVSDSRDDGQVTVSIKKIMYAKAWETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASEAMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEIMGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEPGDMLRDPNRVFSLAEETAAKYHARVEAEKIAREQAAKEMVLGLGDSLGSLE 366          
The following BLAST results are available for this feature:
BLAST of EWM26097.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108091|gb|EWM26097.1|0.000e+0100.0030s ribosomal protein s1 [Nannochloropsis gaditana... [more]
gi|397620579|gb|EJK65790.1|4.921e-12856.10hypothetical protein THAOC_13316, partial [Thalass... [more]
gi|298708733|emb|CBJ30695.1|2.163e-12651.78Plastid ribosomal protein S1 [Ectocarpus siliculos... [more]
gi|1072234341|gb|OEU19071.1|1.446e-11960.73small ribosomal protein S1 [Fragilariopsis cylindr... [more]
gi|1210525780|dbj|GAX15386.1|1.630e-11857.89small subunit ribosomal protein S1 [Fistulifera so... [more]
gi|1210515326|dbj|GAX25778.1|2.571e-11857.70small subunit ribosomal protein S1 [Fistulifera so... [more]
gi|224006742|ref|XP_002292331.1|3.405e-11157.78RS1, ribosomal protein 1, partial [Thalassiosira p... [more]
gi|219114931|ref|XP_002178261.1|3.149e-10959.09predicted protein, partial [Phaeodactylum tricornu... [more]
gi|676393693|ref|XP_009040124.1|1.835e-10854.55hypothetical protein AURANDRAFT_38598 [Aureococcus... [more]
gi|676393149|ref|XP_009039852.1|3.711e-10855.33hypothetical protein AURANDRAFT_54676 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4535rna4535Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications