rna4531, rna4531 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4531
Unique Name	rna4531
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2436
Alignment location	CM002463.1:850571..852042 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent clp protease adaptor protein
Orig transcript id	gnl\|cribi\|Naga_100014g8.9303.mrna
Orig protein id	gnl\|cribi\|Naga_100014g8.9303
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:850571..852042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g8	gene4373	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4531	rna4531-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26126.1	cds4519	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:850571..852042+
coding sequence from alignment at CM002463.1:850571..852042+

mRNA sequence

>rna4531 ID=rna4531|Name=rna4531|organism=Nannochloropsis gaditana|type=mRNA|length=2436bp
ATGCTGTGGTCGCGATTTTCTCCTTATCATTATACGCGACAGGCGTCAGT
CCGGACGTCCACGACCTTCACTATGCGCGCCCATCTCTCCCTCGGCGTGG
TAGCCGCCCTTGCCGCCCTCTTGGGTCTGGCGAACCTCGCACATGCGTCT
GACCCCAAAGATTGCGAAGTATGTATTGGCGTGCTGGAGAAGATCGACGC
AGGCATGGAGGCCAAGGCAAAAAAGAACAAACTCGCTGTGGAGGACGCCA
TCGAAGCTTACTGCTCGCGCAAGGACATCGACAACAAAGAGAAGAAGCTC
TGCTACTTCCTCAAGCCCATCAAGCGCGACGTATCTCAGCCTTTTTCCAC
GGGCATGCCCAAGGCGAAGGTGTGCGCGCGCCTCAAGAAGAAATCGGCTG
AGATTTGCGGCATCAAATACCCCGTCAAGGTGGACAGTCAGACTGATTAC
ACCAAGCTTCGAGTGAAGGAGCTTAAAGCTATCTTGGCGGAACGGGGCGT
TGAATGCACAGGTTGCCTCGAAAAACCCGATTTCATTAAGAAGTGTGAGG
AAACTGCGCACCTGTCCGCTTCAGCGGCCGCCAGGGACCGTAAGGATCTG
GGAATCTGCAGAGAATATAAGGCTTTATGTTCAGGCGAAGCAGTGTATGC
AATTTTCTCTTCCCAGCGATTTTGTGAGCGGGGTGGCGTGTTTTTTAGCT
CGGCAGTCGTGGTGGGCGATGGAGATGCGCCCATTGTAGAGTGGGGAGGA
GCACGGAAGAGGAATGGACACTCTTTTCGATTGGAGAAGAAGGAGGCTTG
TCTCCAAAGAATAAACTACTACTTCGCACTGGACTGCAGGCGCGAGCAAG
TAGTTCTGTCGCTTCCTGGTGTGCCTCCTATGTGGCATCGTGTATTTGAG
ATGCTGCCAATCTCTGTGGTGGCAAGTATTGCAGTGTTGCTGTTTCCGTC
CTCGGATGCTTTTTTAAGTCCTCAACAATTGCCAAACTTGGCCCTGAAAG
GATGGCCGTCAAGGCTGGAACGGGGTGCGAGTGCCGGATCTCAAGAAGGC
ATCAAGCCTCTGCCAAGCCCGCCGGCAGTATGGGAGGATGGGCTGCCTCC
TAGTAAGTACGCACAATTTTTAGAGGAATTTTGGCAGCAGAGACCTCTGT
TGATTCGTCGGGCCTTCGACCCCTCCGTGGCGGTTGTAGGACCCGGCGAG
TTGTTAGCCCTGGCCTGCGACGGGAGGGCGCCCTCACGACTGATCGAGCA
CTGGGCTCTGCGCAATAAGGTTGAGGCAGAAGAAGAAGGCTGCCACGGCG
ACGAGGGAGCCACGTGGAGCGTTCGACAAGGCCCCTTTGATGAAGAAGAC
TTTCAGGGGGAGGGGGACGAGGGGGAGGGACGCACGTGGACAGTTTTAGT
GCAGGAGGTGGACAGGCATGTCCCCGAGGTCGGAGATCTGCTTCAGTCCT
TCCGTTTTTTGCCCAACTGGCGCGTGGACGACATCATGATCAGCTACGCG
CCGCAAGCGGGGGGCATCGGCCCGCATGTGGACAACTACGACGTCTTCCT
CCTCCAAGGCCGCGGCACACGGAAGTGGTCGATCCAGAACGCGCTCATGG
ACCGCGAAACCGAGGCCCGGTCCTTAATACCGCACAACCCTCTCCGTGTC
CTCGCCAGCTTCCGAGAAACTCATGCGTGGACCCTCGAGCCCGGGGACTT
GCTCTACCTCCCCCCTCGCGTCCCTCACGACGGCGTCAGCCTCGACCAGG
ACTGTATGACGTACTCCATCGGTTTCCGAGCCCCCACGCAAGAAGAACTT
TTGGAAGCCGCCACCGCAGCAGCGGTATCCACCCTGCGAGAAAGGGAGGC
CGGCCCGCGGTTTTACGTGGACCCGCACCTCCCTTACGCCCAGGATGTGG
GCGAGATCACCCCTGTGGCGCTCAAGCAGGTCAGAGGCTTGGTTCAAGAT
GCCTTAGCTGCGGTGCTGGATGACGATGCTCTGCTGGCGCGGTGGGCGGG
GCGGTCGTTGACCGGACCCAAGCATCGTTCGAGGGCGGTGGCCGCGGAGG
AGGGAGAGGAGTTTGGTGTGTGGATGGAAAGGGAGGAGGCTCGTGCTGTC
GTCCAAGAGTTGCTTGGGTGGGAGTCGTCAAGGGAAATAGAAGAAAAGGG
GGCAACTCAAGCGTCCATGCCGCGAAAGCTTTACCGGGCGGAGGGACTCA
AGTTCGCGCACGCGGATGGAGGCCGCCTGCTGTTCGTCGATGGGCATGTC
TGGGATTTACGAGACGAGGACGAAGAGCGACGGCGGCGGATTTGCAACTG
TTTGACCGGGGGGGCCTCACCCTTTCCATTGCAAGATATTAGCAGCGTTT
TGCGGGAGAGTTTGGAATGTGTAGACGTGGTAACTGAATGGCTGATGCGC
GGCTTCTTGTACGTCGTGGAGGAAAATTGCACGTAG

protein sequence of rna4531

>rna4531-protein ID=rna4531-protein|Name=rna4531|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWS
QAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKG
GVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVP
TLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDS
NFKKDGEGGEGGGPQGGKK

mRNA from alignment at CM002463.1:850571..852042+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4531 ID=rna4531|Name=rna4531|organism=Nannochloropsis gaditana|type=mRNA|length=1472bp|location=Sequence derived from alignment at CM002463.1:850571..852042+ (Nannochloropsis gaditana)
CAGCACGCAAAacgcggccgaggaggcgtCCAACATGACCCGAAGACGTC
TAATTAAGAATTCACGCCGTCGGCGCCAGTATTGTCTGCCTGCGCGTTGT
CAATGTGCGGGTTAGCCCCCGCGGGCGTGGAATGAACAGCCCCGGGCCGC
ACACAGCCTCGATCAAGTCATGCAGTCGAGACCTCCCGGGGCAAGCCACG
CCGCACAGCCTCACACACGCATCCTACATGTTTTTCACAGCAATATGGCT
GCTGTAAGACagtccacttcctctcggtGCGTGATTCTGGTCTTGGtggc
gctgctgctgtcatGGTCCCAGGCATTTTTtctctcgccctctccttcca
tgGGGCAACTGCAACAGCACCGGTCAGGTATGTATTGAAGATTGATTTTC
GTGCTTTTTCGAGAAACACGGTGCTGAATGAGAGTCCGGTTCCAGAGAGC
ATTAAGGATTGATTTTTCGGGAGAAGCTGCAGGGGCATCAAAGCTGCTTG
GATCTTTTCTGATCTTTGGTTTTCCCAAGCCGCACCCTGCTCAACTGGGT
TACAGCCTAAAAAACGTTTGCATAACGCGATAATAATGCGGACATCGTCC
TACTTGCTCGCTCAGCATCTTCATGAGCGTGTTTTTCTCGAGCTCATGTG
ATACTATGTTTTTCCCACGCACAGATGGAGTGCCAAGGATAGCCCATACA
TCAAGGTCAGCCCTACCTGTCTCGATGTCGGACGTAGGGTTCGGCACTGG
CAAGCAGGCGAAAGGAGGCGTTAAAGTAGgggtgaaagagaaggaggccg
tgAAAACCAGtccgaaagagaaggagaagttTGAGGTGGAATGGCGAGTC
CTTCTGCACAACGACGACGTGCATACCTTCGATTATGTGTCTCGGAAACT
TGCAGAGGTGCGTTCTGtccccttctctgcctctctTTCGCAGCAATACT
AAGTCAACGCCATCCTGGTACCTGCAACGCTCAACAGATTGTGCCCACAC
TAACCCGCTCCAAGGCTTGGGAGTGCACGCTAGCGGCTCACTCCCACGAC
TTTTCCACGATTGCCATCGTCACGAAGGCCAGCGCGGAGGAGTTCTGCAT
GAAACTTcagaaggagggcttgacTATATCGGTAGCACCTGACTCGAACT
TCAaaaaggatggggagggaggtgaaggtggGGGCCCACAGGGTGGCAAG
AAGTAAACGTCTGCAGATGGCAGCTTCAACGCGCAGCATCACAAAAGGTG
TGAAATTTTTGATATCGACGATGAGGAGCTGGTCGCAAAGCTGGCAAACA
GATGGTATTGTGGTAGCCGCCACAATATAGGTGTAGGGGGCTCGGGCTGG
TGTGACAGGCTGATTCATGTTTGGTAGGGAGACCCCCCTCGTCAGTAATG
TACTCGCGACAACGATAACCGCCACGTCAAGAAAGCAAAATTAATTAGTC
AAGAAATTCATACAttctttgc

Coding sequence (CDS) from alignment at CM002463.1:850571..852042+

>rna4531 ID=rna4531|Name=rna4531|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at CM002463.1:850571..852042+ (Nannochloropsis gaditana)
ATGCAGTCGAGACCTCCCGGGGCAAGCCACGCCGCACAGCCTCACACACG
CATCCTACATGTTTTTCACAGCAATATGGCTGCTGTAAGACagtccactt
cctctcggtGCGTGATTCTGGTCTTGGtggcgctgctgctgtcatGGTCC
CAGGCATTTTTtctctcgccctctccttccatgGGGCAACTGCAACAGCA
CCGGTCAGATGGAGTGCCAAGGATAGCCCATACATCAAGGTCAGCCCTAC
CTGTCTCGATGTCGGACGTAGGGTTCGGCACTGGCAAGCAGGCGAAAGGA
GGCGTTAAAGTAGgggtgaaagagaaggaggccgtgAAAACCAGtccgaa
agagaaggagaagttTGAGGTGGAATGGCGAGTCCTTCTGCACAACGACG
ACGTGCATACCTTCGATTATGTGTCTCGGAAACTTGCAGAGATTGTGCCC
ACACTAACCCGCTCCAAGGCTTGGGAGTGCACGCTAGCGGCTCACTCCCA
CGACTTTTCCACGATTGCCATCGTCACGAAGGCCAGCGCGGAGGAGTTCT
GCATGAAACTTcagaaggagggcttgacTATATCGGTAGCACCTGACTCG
AACTTCAaaaaggatggggagggaggtgaaggtggGGGCCCACAGGGTGG
CAAGAAGTAAATGCAGTCGAGACCTCCCGGGGCAAGCCACGCCGCACAGC
CTCACACACGCATCCTACATGTTTTTCACAGCAATATGGCTGCTGTAAGA
CagtccacttcctctcggtGCGTGATTCTGGTCTTGGtggcgctgctgct
gtcatGGTCCCAGGCATTTTTtctctcgccctctccttccatgGGGCAAC
TGCAACAGCACCGGTCAGATGGAGTGCCAAGGATAGCCCATACATCAAGG
TCAGCCCTACCTGTCTCGATGTCGGACGTAGGGTTCGGCACTGGCAAGCA
GGCGAAAGGAGGCGTTAAAGTAGgggtgaaagagaaggaggccgtgAAAA
CCAGtccgaaagagaaggagaagttTGAGGTGGAATGGCGAGTCCTTCTG
CACAACGACGACGTGCATACCTTCGATTATGTGTCTCGGAAACTTGCAGA
GATTGTGCCCACACTAACCCGCTCCAAGGCTTGGGAGTGCACGCTAGCGG
CTCACTCCCACGACTTTTCCACGATTGCCATCGTCACGAAGGCCAGCGCG
GAGGAGTTCTGCATGAAACTTcagaaggagggcttgacTATATCGGTAGC
ACCTGACTCGAACTTCAaaaaggatggggagggaggtgaaggtggGGGCC
CACAGGGTGGCAAGAAGTAAATGCAGTCGAGACCTCCCGGGGCAAGCCAC
GCCGCACAGCCTCACACACGCATCCTACATGTTTTTCACAGCAATATGGC
TGCTGTAAGACagtccacttcctctcggtGCGTGATTCTGGTCTTGGtgg
cgctgctgctgtcatGGTCCCAGGCATTTTTtctctcgccctctccttcc
atgGGGCAACTGCAACAGCACCGGTCAGATGGAGTGCCAAGGATAGCCCA
TACATCAAGGTCAGCCCTACCTGTCTCGATGTCGGACGTAGGGTTCGGCA
CTGGCAAGCAGGCGAAAGGAGGCGTTAAAGTAGgggtgaaagagaaggag
gccgtgAAAACCAGtccgaaagagaaggagaagttTGAGGTGGAATGGCG
AGTCCTTCTGCACAACGACGACGTGCATACCTTCGATTATGTGTCTCGGA
AACTTGCAGAGATTGTGCCCACACTAACCCGCTCCAAGGCTTGGGAGTGC
ACGCTAGCGGCTCACTCCCACGACTTTTCCACGATTGCCATCGTCACGAA
GGCCAGCGCGGAGGAGTTCTGCATGAAACTTcagaaggagggcttgacTA
TATCGGTAGCACCTGACTCGAACTTCAaaaaggatggggagggaggtgaa
ggtggGGGCCCACAGGGTGGCAAGAAGTAA

Synonyms

Publications