EWM26126.1, cds4519 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|585108120|gb|EWM26126.1| (atp-dependent clp protease adaptor protein [Nannochloropsis gaditana]) HSP 1 Score: 451.055 bits (1159), Expect = 1.770e-160 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query: 1 MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWSQAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK 219
MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWSQAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK
Sbjct: 1 MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWSQAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK 219
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|676387907|ref|XP_009037232.1| (hypothetical protein AURANDRAFT_17179, partial [Aureococcus anophagefferens] >gi|323451978|gb|EGB07853.1| hypothetical protein AURANDRAFT_17179, partial [Aureococcus anophagefferens]) HSP 1 Score: 101.293 bits (251), Expect = 2.292e-24 Identity = 42/84 (50.00%), Postives = 63/84 (75.00%), Query Frame = 0
Query: 127 RVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGE 210
R+LLHNDDVHTF+YV+ L +I+PT++ +KA++ T+ H ST++ K A+++C++LQK GLT S++PDSNFK + GGE
Sbjct: 1 RLLLHNDDVHTFEYVTYMLQKIIPTISNAKAYQLTMTTHCEGVSTVSQTAKPLAQKYCVQLQKGGLTASISPDSNFKNNRSGGE 84
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|544213373|ref|XP_005536834.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017396|dbj|BAM80798.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 99.3673 bits (246), Expect = 3.717e-22 Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 0
Query: 93 GTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPD 199
G ++ GGV V K K AV+ KEK E WRVLLHND++HTFDYV+ L ++V TLTR KA T+ AH +T+ K AEE+C LQ+EGLT S+ PD
Sbjct: 102 GEREREGGGVAVITKTKPAVR--EKEKTAKEPMWRVLLHNDNIHTFDYVTHTLVKVVKTLTRYKAHRITVHAHKAGVATVTTTWKQLAEEYCQGLQREGLTSSIMPD 206
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|873235763|emb|CEL99848.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 98.5969 bits (244), Expect = 6.697e-22 Identity = 67/198 (33.84%), Postives = 103/198 (52.02%), Query Frame = 0
Query: 39 ILVLVALLLSW---SQAFFLSPSPSMGQLQQHRSDGVPR-------IAHTSRSALPV---SMSDVGFGTGKQAKGGVKVGVKEKEAVK----------------TSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGE 207
+L + L L+W QA+ S +G +HRS +PR I+ R A+P+ SMS GT + K+ +K AV+ +E+ K +WRVLLHNDD+HTF YV+ + E++P ++ +KA T+ AH + +T+ K AE +C+ LQ+ GLT+SVAPD +FKK+ +
Sbjct: 4 LLGICVLCLAWLRCGQAYVASWMRLIGGSGRHRS-AIPRRTARGMPISTARRKAMPLCVLSMSTSADGTQME-----KIKEVKKAAVRLLDREETKDEEEEELDEDQEERSKQIKDWRVLLHNDDIHTFRYVTDSIIEVIPQISSAKAHTITVEAHKNGVATVTATWKDRAERYCVGLQRSGLTVSVAPDKDFKKNRD 195
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|1072230742|gb|OEU15475.1| (hypothetical protein FRACYDRAFT_218307 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 95.5153 bits (236), Expect = 2.291e-21 Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 0
Query: 109 KEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG 213
KE +T K+ +K E WRV+LHND+VHTF+YV R L++ + TL R ++E + H +T+ K AE+FC+ LQ++GLT+S++PD +F EGG GG
Sbjct: 54 KERTETETKDDKKKEEMWRVVLHNDEVHTFNYVIRSLSKCIGTLDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLTVSISPDEDF----EGGHSGG 154
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|299471643|emb|CBN76865.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 96.2857 bits (238), Expect = 6.404e-21 Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 0
Query: 74 RIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEK--EAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNF 202
R++ SR S +D TG GV+ VKEK E V+ KE+ E WRV+LHND++HTFDYV++ + ++V LT KA+E T+ H +T+ K+ +E +C++LQ+ GLT S+APDS F
Sbjct: 59 RVSQRSRWLSMSSATDQDVSTGGGTGTGVQTIVKEKVKEMVEVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITKVVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLTASIAPDSKF 189
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|1210529198|dbj|GAX12344.1| (hypothetical protein FisN_1Hu277 [Fistulifera solaris]) HSP 1 Score: 93.2041 bits (230), Expect = 2.700e-20 Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 0
Query: 126 WRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG 213
WRV+LHND+VHTF+YV R L +++ TL R A+E + H +TI K AE+FC+ LQ++GLT+S++PD +F EGG GG
Sbjct: 80 WRVVLHNDEVHTFNYVVRSLTKVIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQFCLGLQRQGLTVSISPDEDF----EGGHSGG 163
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|551611971|ref|XP_005787044.1| (hypothetical protein EMIHUDRAFT_455525 [Emiliania huxleyi CCMP1516] >gi|485640378|gb|EOD34615.1| hypothetical protein EMIHUDRAFT_455525 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 91.2781 bits (225), Expect = 2.668e-19 Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 0
Query: 37 CVILVLVALLLSWSQAFFLSPSPSMGQLQQHR---SDGVPRIAHTSRSALP---VSMSDVGFGTGKQAK-GGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDS 200
V+LV AL L ++ L P P+ G L Q R + PR A + +A V M + G K+AK GG V + K K KE+ E WR+L+HNDDVHT+DYV + +V T+TR KA T H+ +T+ I K A+++CM+LQK GLT S+AP+S
Sbjct: 5 AVVLVAPALTLHPARTA-LRPQPARGPLLQPRFAAAAARPRGAIGAAAAAAAGGVWMQE-GLEREKKAKKGGAAVVERPKAEPKQMSKEEIANEPMWRLLIHNDDVHTWDYVIYAIVSVVKTVTRKKAHRITTTVHTMGSATVTITWKQQAKKYCMELQKWGLTSSIAPES 173
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|223996201|ref|XP_002287774.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976890|gb|EED95217.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 90.8929 bits (224), Expect = 4.268e-19 Identity = 62/187 (33.16%), Postives = 91/187 (48.66%), Query Frame = 0
Query: 40 LVLVALLLSWSQAFFLSPSPSMGQL--QQHRSDGVPRIAHTSRSALPV-SMSD------VGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGG 217
+V+VAL Q SP+ S + HRS TS S+ + MSD K G+ +KE T +E + E WRV+LHND+VHTF+YV R L +++ TL + KA + + H +T+ K A ++C+ +Q+ GLT S+AP+ F EGG GP+ G
Sbjct: 12 VVIVALGACLHQVMAFSPAVSRNIVTPSAHRSGAQTIAQRTSVSSTTILHMSDSGGGGGGAMERDTSKKRGLTTITIDKEETDTQMEEDDTPEEVWRVILHNDEVHTFNYVIRSLQKVIGTLDKKKAHDICVVTHGTGQATVTQCWKEQAMKYCVGMQRFGLTASIAPEGKF----EGGGNDGPEAG 194
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|551611900|ref|XP_005787017.1| (hypothetical protein EMIHUDRAFT_455577 [Emiliania huxleyi CCMP1516] >gi|485640341|gb|EOD34588.1| hypothetical protein EMIHUDRAFT_455577 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 90.5077 bits (223), Expect = 5.414e-19 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 0
Query: 96 KQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDS 200
K KGG V + K K KE+ E WR+L+HNDDVHT+DYV + +V T+TR KA T H+ +T+ I K A+++CM+LQK GLT S+AP+S
Sbjct: 69 KAKKGGAAVVERPKAEPKQMSKEEIANEPMWRLLIHNDDVHTWDYVIYAIVSVVKTVTRKKAHRITTTVHTMGSATVTITWKQQAKKYCMELQKWGLTSSIAPES 173 The following BLAST results are available for this feature:
BLAST of EWM26126.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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