EWM26126.1, cds4519 (CDS) Nannochloropsis gaditana

Overview
NameEWM26126.1
Unique Namecds4519
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:850740..850947 +
Alignment locationCM002463.1:851245..851477 +
Alignment locationCM002463.1:851558..851776 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26126.1
Productatp-dependent clp protease adaptor protein
Orig transcript idgnl|cribi|Naga_100014g8.9303.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:850740..850947 +
CM002463.1supercontigCM002463.1:851245..851477 +
CM002463.1supercontigCM002463.1:851558..851776 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030163protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR003769ClpS_core
Homology
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|585108120|gb|EWM26126.1| (atp-dependent clp protease adaptor protein [Nannochloropsis gaditana])

HSP 1 Score: 451.055 bits (1159), Expect = 1.770e-160
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query:    1 MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWSQAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK 219
            MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWSQAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK
Sbjct:    1 MQSRPPGASHAAQPHTRILHVFHSNMAAVRQSTSSRCVILVLVALLLSWSQAFFLSPSPSMGQLQQHRSDGVPRIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGGKK 219          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|676387907|ref|XP_009037232.1| (hypothetical protein AURANDRAFT_17179, partial [Aureococcus anophagefferens] >gi|323451978|gb|EGB07853.1| hypothetical protein AURANDRAFT_17179, partial [Aureococcus anophagefferens])

HSP 1 Score: 101.293 bits (251), Expect = 2.292e-24
Identity = 42/84 (50.00%), Postives = 63/84 (75.00%), Query Frame = 0
Query:  127 RVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGE 210
            R+LLHNDDVHTF+YV+  L +I+PT++ +KA++ T+  H    ST++   K  A+++C++LQK GLT S++PDSNFK +  GGE
Sbjct:    1 RLLLHNDDVHTFEYVTYMLQKIIPTISNAKAYQLTMTTHCEGVSTVSQTAKPLAQKYCVQLQKGGLTASISPDSNFKNNRSGGE 84          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|544213373|ref|XP_005536834.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449017396|dbj|BAM80798.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 99.3673 bits (246), Expect = 3.717e-22
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 0
Query:   93 GTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPD 199
            G  ++  GGV V  K K AV+   KEK   E  WRVLLHND++HTFDYV+  L ++V TLTR KA   T+ AH    +T+    K  AEE+C  LQ+EGLT S+ PD
Sbjct:  102 GEREREGGGVAVITKTKPAVR--EKEKTAKEPMWRVLLHNDNIHTFDYVTHTLVKVVKTLTRYKAHRITVHAHKAGVATVTTTWKQLAEEYCQGLQREGLTSSIMPD 206          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|873235763|emb|CEL99848.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 98.5969 bits (244), Expect = 6.697e-22
Identity = 67/198 (33.84%), Postives = 103/198 (52.02%), Query Frame = 0
Query:   39 ILVLVALLLSW---SQAFFLSPSPSMGQLQQHRSDGVPR-------IAHTSRSALPV---SMSDVGFGTGKQAKGGVKVGVKEKEAVK----------------TSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGE 207
            +L +  L L+W    QA+  S    +G   +HRS  +PR       I+   R A+P+   SMS    GT  +     K+   +K AV+                   +E+ K   +WRVLLHNDD+HTF YV+  + E++P ++ +KA   T+ AH +  +T+    K  AE +C+ LQ+ GLT+SVAPD +FKK+ +
Sbjct:    4 LLGICVLCLAWLRCGQAYVASWMRLIGGSGRHRS-AIPRRTARGMPISTARRKAMPLCVLSMSTSADGTQME-----KIKEVKKAAVRLLDREETKDEEEEELDEDQEERSKQIKDWRVLLHNDDIHTFRYVTDSIIEVIPQISSAKAHTITVEAHKNGVATVTATWKDRAERYCVGLQRSGLTVSVAPDKDFKKNRD 195          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|1072230742|gb|OEU15475.1| (hypothetical protein FRACYDRAFT_218307 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.5153 bits (236), Expect = 2.291e-21
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 0
Query:  109 KEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG 213
            KE  +T  K+ +K E  WRV+LHND+VHTF+YV R L++ + TL R  ++E  +  H    +T+    K  AE+FC+ LQ++GLT+S++PD +F    EGG  GG
Sbjct:   54 KERTETETKDDKKKEEMWRVVLHNDEVHTFNYVIRSLSKCIGTLDRKASFEICVETHGVGKATVTKTWKKQAEQFCLGLQRQGLTVSISPDEDF----EGGHSGG 154          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|299471643|emb|CBN76865.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.2857 bits (238), Expect = 6.404e-21
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 0
Query:   74 RIAHTSRSALPVSMSDVGFGTGKQAKGGVKVGVKEK--EAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNF 202
            R++  SR     S +D    TG     GV+  VKEK  E V+   KE+   E  WRV+LHND++HTFDYV++ + ++V  LT  KA+E T+  H    +T+    K+ +E +C++LQ+ GLT S+APDS F
Sbjct:   59 RVSQRSRWLSMSSATDQDVSTGGGTGTGVQTIVKEKVKEMVEVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITKVVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLTASIAPDSKF 189          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|1210529198|dbj|GAX12344.1| (hypothetical protein FisN_1Hu277 [Fistulifera solaris])

HSP 1 Score: 93.2041 bits (230), Expect = 2.700e-20
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 0
Query:  126 WRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGG 213
            WRV+LHND+VHTF+YV R L +++ TL R  A+E  +  H    +TI    K  AE+FC+ LQ++GLT+S++PD +F    EGG  GG
Sbjct:   80 WRVVLHNDEVHTFNYVVRSLTKVIGTLDRKAAFEICVQTHGIGKATITKTWKKQAEQFCLGLQRQGLTVSISPDEDF----EGGHSGG 163          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|551611971|ref|XP_005787044.1| (hypothetical protein EMIHUDRAFT_455525 [Emiliania huxleyi CCMP1516] >gi|485640378|gb|EOD34615.1| hypothetical protein EMIHUDRAFT_455525 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 91.2781 bits (225), Expect = 2.668e-19
Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 0
Query:   37 CVILVLVALLLSWSQAFFLSPSPSMGQLQQHR---SDGVPRIAHTSRSALP---VSMSDVGFGTGKQAK-GGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDS 200
             V+LV  AL L  ++   L P P+ G L Q R   +   PR A  + +A     V M + G    K+AK GG  V  + K   K   KE+   E  WR+L+HNDDVHT+DYV   +  +V T+TR KA   T   H+   +T+ I  K  A+++CM+LQK GLT S+AP+S
Sbjct:    5 AVVLVAPALTLHPARTA-LRPQPARGPLLQPRFAAAAARPRGAIGAAAAAAAGGVWMQE-GLEREKKAKKGGAAVVERPKAEPKQMSKEEIANEPMWRLLIHNDDVHTWDYVIYAIVSVVKTVTRKKAHRITTTVHTMGSATVTITWKQQAKKYCMELQKWGLTSSIAPES 173          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|223996201|ref|XP_002287774.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976890|gb|EED95217.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.8929 bits (224), Expect = 4.268e-19
Identity = 62/187 (33.16%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   40 LVLVALLLSWSQAFFLSPSPSMGQL--QQHRSDGVPRIAHTSRSALPV-SMSD------VGFGTGKQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDSNFKKDGEGGEGGGPQGG 217
            +V+VAL     Q    SP+ S   +    HRS        TS S+  +  MSD               K G+     +KE   T  +E +  E  WRV+LHND+VHTF+YV R L +++ TL + KA +  +  H    +T+    K  A ++C+ +Q+ GLT S+AP+  F    EGG   GP+ G
Sbjct:   12 VVIVALGACLHQVMAFSPAVSRNIVTPSAHRSGAQTIAQRTSVSSTTILHMSDSGGGGGGAMERDTSKKRGLTTITIDKEETDTQMEEDDTPEEVWRVILHNDEVHTFNYVIRSLQKVIGTLDKKKAHDICVVTHGTGQATVTQCWKEQAMKYCVGMQRFGLTASIAPEGKF----EGGGNDGPEAG 194          
BLAST of EWM26126.1 vs. NCBI_GenBank
Match: gi|551611900|ref|XP_005787017.1| (hypothetical protein EMIHUDRAFT_455577 [Emiliania huxleyi CCMP1516] >gi|485640341|gb|EOD34588.1| hypothetical protein EMIHUDRAFT_455577 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 90.5077 bits (223), Expect = 5.414e-19
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   96 KQAKGGVKVGVKEKEAVKTSPKEKEKFEVEWRVLLHNDDVHTFDYVSRKLAEIVPTLTRSKAWECTLAAHSHDFSTIAIVTKASAEEFCMKLQKEGLTISVAPDS 200
            K  KGG  V  + K   K   KE+   E  WR+L+HNDDVHT+DYV   +  +V T+TR KA   T   H+   +T+ I  K  A+++CM+LQK GLT S+AP+S
Sbjct:   69 KAKKGGAAVVERPKAEPKQMSKEEIANEPMWRLLIHNDDVHTWDYVIYAIVSVVKTVTRKKAHRITTTVHTMGSATVTITWKQQAKKYCMELQKWGLTSSIAPES 173          
The following BLAST results are available for this feature:
BLAST of EWM26126.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108120|gb|EWM26126.1|1.770e-160100.00atp-dependent clp protease adaptor protein [Nannoc... [more]
gi|676387907|ref|XP_009037232.1|2.292e-2450.00hypothetical protein AURANDRAFT_17179, partial [Au... [more]
gi|544213373|ref|XP_005536834.1|3.717e-2249.53hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|873235763|emb|CEL99848.1|6.697e-2233.84unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072230742|gb|OEU15475.1|2.291e-2143.81hypothetical protein FRACYDRAFT_218307 [Fragilario... [more]
gi|299471643|emb|CBN76865.1|6.404e-2141.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210529198|dbj|GAX12344.1|2.700e-2047.73hypothetical protein FisN_1Hu277 [Fistulifera sola... [more]
gi|551611971|ref|XP_005787044.1|2.668e-1939.77hypothetical protein EMIHUDRAFT_455525 [Emiliania ... [more]
gi|223996201|ref|XP_002287774.1|4.268e-1933.16predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551611900|ref|XP_005787017.1|5.414e-1944.76hypothetical protein EMIHUDRAFT_455577 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4531rna4531Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications