rna4522, rna4522 (mRNA) Nannochloropsis gaditana

Overview
Namerna4522
Unique Namerna4522
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1068
Alignment locationCM002463.1:824923..826134 +

Link to JBrowse

Properties
Property NameValue
Productubiquitin conjugating enzyme family protein
Orig transcript idgnl|cribi|Naga_101952g1.7631.mrna
Orig protein idgnl|cribi|Naga_101952g1.7631
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:824923..826134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101952g1gene4364Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4522rna4522-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26162.1cds4511Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4522 ID=rna4522|Name=rna4522|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp
ATGCAGAATGGGCTGAGCACGTGCGAGTCGTCCTCCGCCACACCCCCGCC
GTCGCTGGACTCCGAGGCGCTTCAGTCGCCGAAGCAAGGATACCGGGAGC
CTCAGGTGGAGCAGGGGGCCTCAGAGGCAGGAGGATCGTGCGAAGACATG
GCTGTGGACAAGGAGGGGAGGGATGACGTCCGGCGCGACGTGGGGGAGGA
GGAGGAGGAGGGGCTGGAGGAGATGGATTCGGACGGCTACGAGTACGTGT
ACGAAGACAGCGAGGAGGAGGGGGAGGGGCAGGAGGAGGGCGGCAAGCCC
GAGGGCAGCCGGTCGAGAAGTGCAGGGAGGAAGGCGCAGCACGTGGTGTT
CTCGGGGCTGGACCGCATCGGCTGCACGAAGGACATGCTTTTGAAGAAGG
AGCTGACCCGCCTCAAGGCCGACGTGGAGTTGGGGAAGCGGGGCTGGAAC
GTGGATCTGACGTGGGCGGAGGCGACCCGGATGTTGGGCGTGCGCCTGGA
GCATGAGGGCTTCGTCAAGGCGGAACTGGAGCTGACCTTCCCCGCCGCCT
ACCCCCAGGAGCCCCCCCTCTTCCACTACAAGGGGCCGCGCTTCGACGAC
GCGGTCGACTTCGTCCTCGGCGCCGACACCCTGGAGCCGTGCCGGAAGGA
GAACTGGAACGACACCTTCTCCTGCTCCTCCCTTCTGACGCTCGTGATGG
AGCTCGTCAAGGACAAGTACCCAATCACAGAGAGCCTGGTCTTCGACGAG
TGGGAGAGCACTCTGGTGCAGCTCTGCCGCTCCCGCCTTCCCGGCGTTCC
GCAGCGGGTGAAGGAGGGCATGATATATTTCGGCGTCCGGCTTGTGCCCG
GCAGCGGCGGGGACACGGGCACTTTGAAGCCCACGGCCGGCGTGGGGTAC
TCGGACAGCAGCCGCGCCAGCGCCTTTCACGACTTCTCCGTCCCGGACGC
CCGCTTCAAGAAGCACGTGGAGACTTTCGCGCGCTTTTTGCAGTTGGCGA
AAACGGCCACGTCGGTCATGCTCCAGAGGATCCAGCACGTGGAGATGAGC
GCCTGGCTTTGGCAGTGA
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protein sequence of rna4522

>rna4522-protein ID=rna4522-protein|Name=rna4522|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
LPPPPPPLALVCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRN
EPGLEASSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQH
FREAWAGAIRPDLMQWGEREVLGEGGREGGKEGGKECWAAISGQITRMGW
FQQAVGKKRYKAMMKALVESMDALVAGLEGEGGEGGGGGGATEAVCRQGP
LGCGTEAQGRWRPRRRGGKGEASGGAGTGWKADGDRRQEGEGKKESRSGE
GERSAGEEGMGADGWGCGRSEAAFSHGRDRERVRREPWA
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mRNA from alignment at CM002463.1:824923..826134+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4522 ID=rna4522|Name=rna4522|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp|location=Sequence derived from alignment at CM002463.1:824923..826134+ (Nannochloropsis gaditana)
ctccctccccccccccctcccctggccctagtctgcctctccctccttgg
cacCTGGTCGGGCGAGCCCTGGGACCCCGCGCACTCGAACCTCTCGCAGC
TCTTCATCTCCATCCTCGCCTTCATCTTCACCACGGAGCCGCTGCGCAAC
GAGCCCGGCCTggaggcctcctccccggccacgGTCGCCCTGTACAACGC
CTACCTCCGACTGGAGACCCTGCGGACCGCCATGATCGGGAccctcgccc
gcccgcccgccctcccgccctccgagtTCGAAGGGGTGGTCAAGCAGCAT
TTCCGGGAAgcgtgggcgggggcgatCCGTCCAGATTTGATGcagtgggg
ggagagggaggtgctgggggagggagggagggagggagggaaggaagggg
ggaaggagtgctGGGCGGCTATCTCCGGGCAGATAACCCGGATGGGCTGG
TTCCAGCAAGCtgtgggaaaaaagaggtACAAGGCGATGAtgaaggcgct
ggtggagaGCATGGACGCGCTGGTGGCGGgtctggagggggaaggggggg
aaggaggcgggggcgggggggcgaccGAGGCAGTTTGCAGACAGGGGCCT
CTGGGATGCGGGACGGAAGCGCAGGGGCGGTGGCGTCCGAggcgtcgggg
ggggaaaggggaagcctcggggggggcgggcacaGGCTGGAAGGCTGACG
GGGATCgtaggcaggagggggaaggaaagaaggagagcaggtcgggggag
ggagagcgtaGCGccggtgaggagggaatgggggcaGACGGGTGGGGCtg
tgggaggagcgaggcTGCCTTTTCGCATGGACGCGACAGGGAGCGGGTGA
GAAGAGAGCCATGGGCTTAGGGGGGCACAGGGAGGCTCGCGAGTGGAGAT
TGATGGGGgttagagggagggaaaggctcTAAAGAGAGCAGAGGGGCAGT
ACAAGGCAGAAGAGTgtaggggaaggggagggagggcgggggggggcttc
ctcgcccaggggccaaggaggtgaggaaggtTGTGGAGGttgggatgggg
gggagggagagcggcaTTATACCCGCACATGTAAAGGCAGCGGAGAAGAC
GCTCAGTTTGAATTATCGATCTCGTGCATCCGTCGCGGGTTGTCAGGCCC
CCCTTGTTGCTTTCTCtcgccatccccctcctgaTTGAGCGCCTTGTCTT
CACCACTCCCCT
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Coding sequence (CDS) from alignment at CM002463.1:824923..826134+

>rna4522 ID=rna4522|Name=rna4522|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002463.1:824923..826134+ (Nannochloropsis gaditana)
ctccctccccccccccctcccctggccctagtctgcctctccctccttgg
cacCTGGTCGGGCGAGCCCTGGGACCCCGCGCACTCGAACCTCTCGCAGC
TCTTCATCTCCATCCTCGCCTTCATCTTCACCACGGAGCCGCTGCGCAAC
GAGCCCGGCCTggaggcctcctccccggccacgGTCGCCCTGTACAACGC
CTACCTCCGACTGGAGACCCTGCGGACCGCCATGATCGGGAccctcgccc
gcccgcccgccctcccgccctccgagtTCGAAGGGGTGGTCAAGCAGCAT
TTCCGGGAAgcgtgggcgggggcgatCCGTCCAGATTTGATGcagtgggg
ggagagggaggtgctgggggagggagggagggagggagggaaggaagggg
ggaaggagtgctGGGCGGCTATCTCCGGGCAGATAACCCGGATGGGCTGG
TTCCAGCAAGCtgtgggaaaaaagaggtACAAGGCGATGAtgaaggcgct
ggtggagaGCATGGACGCGCTGGTGGCGGgtctggagggggaaggggggg
aaggaggcgggggcgggggggcgaccGAGGCAGTTTGCAGACAGGGGCCT
CTGGGATGCGGGACGGAAGCGCAGGGGCGGTGGCGTCCGAggcgtcgggg
ggggaaaggggaagcctcggggggggcgggcacaGGCTGGAAGGCTGACG
GGGATCgtaggcaggagggggaaggaaagaaggagagcaggtcgggggag
ggagagcgtaGCGccggtgaggagggaatgggggcaGACGGGTGGGGCtg
tgggaggagcgaggcTGCCTTTTCGCATGGACGCGACAGGGAGCGGGTGA
GAAGAGAGCCATGGGCTTAG
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Synonyms
Publications