EWM26162.1, cds4511 (CDS) Nannochloropsis gaditana

Overview
NameEWM26162.1
Unique Namecds4511
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:824923..825792 +

Link to JBrowse

Properties
Property NameValue
Start range824923
Start range.
Protein idEWM26162.1
Productubiquitin conjugating enzyme family protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101952g1.7631.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:824923..825792 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|585108157|gb|EWM26162.1| (ubiquitin conjugating enzyme family protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 LPPPPPPLALVCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEASSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLGEGGREGGKEGGKECWAAISGQITRMGWFQQAVGKKRYKAMMKALVESMDALVAGLEGEGGEGGGGGGATEAVCRQGPLGCGTEAQGRWRPRRRGGKGEASGGAGTGWKADGDRRQEGEGKKESRSGEGERSAGEEGMGADGWGCGRSEAAFSHGRDRERVRREPWA 289
            LPPPPPPLALVCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEASSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLGEGGREGGKEGGKECWAAISGQITRMGWFQQAVGKKRYKAMMKALVESMDALVAGLEGEGGEGGGGGGATEAVCRQGPLGCGTEAQGRWRPRRRGGKGEASGGAGTGWKADGDRRQEGEGKKESRSGEGERSAGEEGMGADGWGCGRSEAAFSHGRDRERVRREPWA
Sbjct:    1 LPPPPPPLALVCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEASSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLGEGGREGGKEGGKECWAAISGQITRMGWFQQAVGKKRYKAMMKALVESMDALVAGLEGEGGEGGGGGGATEAVCRQGPLGCGTEAQGRWRPRRRGGKGEASGGAGTGWKADGDRRQEGEGKKESRSGEGERSAGEEGMGADGWGCGRSEAAFSHGRDRERVRREPWA 289          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|1213702124|gb|OWY41352.1| (ubiquitin-conjugating enzyme/RWD-like protein [Alternaria alternata])

HSP 1 Score: 90.1225 bits (222), Expect = 1.473e-16
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 0
Query:   11 VCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEA----SSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLG 123
            VCLSLLGTWSGEPW  + S L Q+ ISI A I   EP  NEPG EA    S  +  A+YN  +R  T+RTA++  L +PP L    ++ VV  HFRE    AI   + +W + ++ G
Sbjct:  589 VCLSLLGTWSGEPWSASESTLLQVLISIQAMILCEEPWYNEPGREAGYTRSPNSPSAMYNDKIREHTVRTAILAWLDKPPPL----WKDVVDHHFREH-GNAILKTVEEWTKNKMSG 700          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|1070541058|ref|XP_018391918.1| (hypothetical protein CC77DRAFT_53407 [Alternaria alternata] >gi|1027166130|gb|OAG26497.1| hypothetical protein CC77DRAFT_53407 [Alternaria alternata])

HSP 1 Score: 87.4261 bits (215), Expect = 1.507e-15
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   11 VCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEA----SSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLG 123
            VCLSLLGTWSGEPW  + S L Q+ ISI A I   EP  NEPG EA    S  +  A+YN  +   T+RTA++  L +PP L    ++ VV  HFRE    AI   + +W + ++ G
Sbjct:  596 VCLSLLGTWSGEPWSASESTLLQVLISIQAMILCEEPWYNEPGREAGYTRSPNSPSAMYNDKICEHTVRTAILAWLDKPPPL----WKDVVDHHFREH-GNAILKTVEEWTKNKMSG 707          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|1133456362|ref|XP_003385099.2| (PREDICTED: uncharacterized protein LOC100636993 [Amphimedon queenslandica])

HSP 1 Score: 87.0409 bits (214), Expect = 1.621e-15
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:   11 VCLSLLGTWSG----EPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEA--SSPA---TVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHF 101
            VCLSLLGTW G    E W+P  SNL Q+FISI   I   EP+ NEPG EA   +P      + YNAY+++ T+R AM+  L  PPA     FE  VK HF
Sbjct: 1072 VCLSLLGTWHGGDSSEKWNPLQSNLLQVFISIQGLILIPEPIYNEPGYEAMQGTPQGKIRSSHYNAYIQVNTIRYAMLEQLRHPPA----GFEDTVKIHF 1167          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|971513339|dbj|GAQ84852.1| (ubiquitin-conjugating enzyme E2-like protein [Klebsormidium nitens])

HSP 1 Score: 86.6557 bits (213), Expect = 2.764e-15
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   11 VCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEA-SSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFR 102
            VCLSLLGTWSG  W P  S L Q+ IS+ + +F  EP  NEPG EA  S A    YN  +RL  +R A++  L      PP  F+ V +QHF+
Sbjct: 1454 VCLSLLGTWSGPSWRPGKSTLLQVLISLQSLVFVAEPYYNEPGYEARESSAASEAYNQDVRLNAMRYAILAPLKS----PPRAFQDVTQQHFK 1542          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|1020698751|gb|KZM19589.1| (acid-amino acid ligase [Ascochyta rabiei])

HSP 1 Score: 85.5001 bits (210), Expect = 6.147e-15
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 0
Query:    1 LPPPPPPLALVCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEAS-----SPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGER 119
            + P   P   VCLSLLGTWSGEPW P  S L Q+ +S+ A +F  +P  NEPG E S     + +    YN  LR  T+R AM+  L +PP +    +E VV QHFR   A +I   +++W ++
Sbjct:  626 INPNLYPDGKVCLSLLGTWSGEPWKPRESTLLQVLVSLQAMVFCEQPWYNEPGRERSHGVGYNNSASEAYNRKLRELTVRLAMLNWLEKPPQI----WEDVVGQHFRSN-ADSILRTVIEWSKK 744          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|684386321|ref|XP_009168432.1| (hypothetical protein T265_13718 [Opisthorchis viverrini] >gi|663051876|gb|KER27859.1| hypothetical protein T265_13718 [Opisthorchis viverrini])

HSP 1 Score: 85.5001 bits (210), Expect = 6.445e-15
Identity = 58/149 (38.93%), Postives = 74/149 (49.66%), Query Frame = 0
Query:   11 VCLSLLGTWSGEP---WDPAHSNLSQLFISILAFIFTTEPLRNEPGLEASSPATVAL-----YNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLGEGGREGGKEGGK---ECWAAISGQITRM 148
            VCLS+L TW G P   WDP  SNL Q+ +SI + IF +EP  NEPG E +    +       YN  +R  TLR AM+  L  PPA     FE VV  HF+     AI   L +W       +G     KE  K   +C AA+  Q +R+
Sbjct: 5221 VCLSILNTWQGRPEERWDPKTSNLLQVLVSIQSLIFVSEPYFNEPGYECNYGTPLGQRESQRYNLNIRAATLRWAMLDQLCNPPA----GFEEVVYNHFKLK-REAILVQLERWVAE--CTQGTSSTSKEHQKRMADCLAALKQQFSRL 5362          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|1028903722|gb|OAL05971.1| (hypothetical protein IQ06DRAFT_332333 [Stagonospora sp. SRC1lsM3a])

HSP 1 Score: 84.7297 bits (208), Expect = 1.051e-14
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 0
Query:   11 VCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEA-----SSPATVALYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREV 121
            VCLSLLGTWSGEPW P  S L Q+++SI A I   EP  NEPG EA     S  +  A YN  +R  T+RTAM+  L + P+L    ++ V++QHF  A A  I    ++W + ++
Sbjct:  612 VCLSLLGTWSGEPWVPGVSTLLQVYLSIQAMILCEEPWYNEPGREAGYQNKSGDSPSARYNQSIREHTVRTAMLEWLDKTPSL----WKDVLEQHF-TANADKILHTAVKWSKSKI 722          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|358339921|dbj|GAA47887.1| (baculoviral IAP repeat-containing protein 6 [Clonorchis sinensis])

HSP 1 Score: 84.3445 bits (207), Expect = 1.727e-14
Identity = 58/151 (38.41%), Postives = 75/151 (49.67%), Query Frame = 0
Query:   11 VCLSLLGTWSGEP---WDPAHSNLSQLFISILAFIFTTEPLRNEPGLEASSPATVA-----LYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREV--LGEGGREGGKEGGK---ECWAAISGQITRM 148
            VCLS+L TW G P   WDP  SNL Q+ +SI + IF +EP  NEPG E +    +       YN  +R  TLR AM+  L  PPA     FE VV  HF+       R  ++   ER V    +G     KE  K   +C AA+  Q +R+
Sbjct: 3805 VCLSILNTWQGRPEERWDPKTSNLLQVLVSIQSLIFVSEPYFNEPGYECNYGTPLGQRESQRYNLNIRAATLRWAMLDQLCNPPA----GFEEVVYNHFKLK-----RETILVQLERWVAECTQGTSSTSKEHQKRMADCLAALKQQFSRL 3946          
BLAST of EWM26162.1 vs. NCBI_GenBank
Match: gi|330929913|ref|XP_003302819.1| (hypothetical protein PTT_14787 [Pyrenophora teres f. teres 0-1] >gi|311321570|gb|EFQ89086.1| hypothetical protein PTT_14787 [Pyrenophora teres f. teres 0-1])

HSP 1 Score: 83.5741 bits (205), Expect = 2.471e-14
Identity = 53/122 (43.44%), Postives = 65/122 (53.28%), Query Frame = 0
Query:   10 LVCLSLLGTWSGEPWDPAHSNLSQLFISILAFIFTTEPLRNEPGLEASSPATVA----LYNAYLRLETLRTAMIGTLARPPALPPSEFEGVVKQHFREAWAGAIRPDLMQWGEREVLGEGGR 127
             VCLSLLGTW GEPWDPA S L Q+ +SI A I   EP  NEPG E    +        YNA +R  T+R A++  L  PP L    ++ VV  HF+E    AI   + +W  RE    G R
Sbjct: 1062 FVCLSLLGTWDGEPWDPAVSTLLQILVSIQAMILCEEPWYNEPGREMHYSSVNNNLSRTYNAAIRKMTVRYALLDWLENPPRL----WQDVVDYHFKEH-GNAILKTVEEWT-REANTSGPR 1177          
The following BLAST results are available for this feature:
BLAST of EWM26162.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108157|gb|EWM26162.1|0.000e+0100.00ubiquitin conjugating enzyme family protein, parti... [more]
gi|1213702124|gb|OWY41352.1|1.473e-1645.30ubiquitin-conjugating enzyme/RWD-like protein [Alt... [more]
gi|1070541058|ref|XP_018391918.1|1.507e-1544.44hypothetical protein CC77DRAFT_53407 [Alternaria a... [more]
gi|1133456362|ref|XP_003385099.2|1.621e-1549.00PREDICTED: uncharacterized protein LOC100636993 [A... [more]
gi|971513339|dbj|GAQ84852.1|2.764e-1546.24ubiquitin-conjugating enzyme E2-like protein [Kleb... [more]
gi|1020698751|gb|KZM19589.1|6.147e-1541.13acid-amino acid ligase [Ascochyta rabiei][more]
gi|684386321|ref|XP_009168432.1|6.445e-1538.93hypothetical protein T265_13718 [Opisthorchis vive... [more]
gi|1028903722|gb|OAL05971.1|1.051e-1443.97hypothetical protein IQ06DRAFT_332333 [Stagonospor... [more]
gi|358339921|dbj|GAA47887.1|1.727e-1438.41baculoviral IAP repeat-containing protein 6 [Clono... [more]
gi|330929913|ref|XP_003302819.1|2.471e-1443.44hypothetical protein PTT_14787 [Pyrenophora teres ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4522rna4522Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications