rna4521, rna4521 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4521
Unique Name	rna4521
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	303
Alignment location	CM002463.1:822742..824696 +

Link to JBrowse

Properties


Property Name	Value
Product	Ubiquitin-conjugating enzyme/RWD
Orig transcript id	gnl\|cribi\|Naga_100121g13.10138.mrna
Orig protein id	gnl\|cribi\|Naga_100121g13.10138
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:822742..824696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100121g13	gene4363	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4521	rna4521-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26166.1	cds4510	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:822742..824696+
coding sequence from alignment at CM002463.1:822742..824696+

mRNA sequence

>rna4521 ID=rna4521|Name=rna4521|organism=Nannochloropsis gaditana|type=mRNA|length=303bp
ATGCAGGCCCATCCCCCTCCTTCACCACCTCCCCCGCTAGCAATGTTGGT
GCCACGCTTTTCCCTTCAGCAAACCCCGAATACCGTCATAGTAACCATTA
AGTTGCCTTACATCCGTGTAGGTGACGCGGAAGTCTCTGCGGATGGCCGT
GACTTTGTATTTTATTGCAGGCCCTACCTCTTAAAGCTTCAGTTCCCACA
CGCCCTCAAGAACAATGAAGACGAAGAGAGTCATTGCCGCGCGGTCTATG
ACGCTAATTTGGTGAGTGGAGCAGGTCTCCCGTCCCCGTGCACAGGTCGA
TAG

protein sequence of rna4521

>rna4521-protein ID=rna4521-protein|Name=rna4521|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MQNGLSTCESSSATPPPSLDSEALQSPKQGYREPQVEQGASEAGGSCEDM
AVDKEGRDDVRRDVGEEEEEGLEEMDSDGYEYVYEDSEEEGEGQEEGGKP
EGSRSRSAGRKAQHVVFSGLDRIGCTKDMLLKKELTRLKADVELGKRGWN
VDLTWAEATRMLGVRLEHEGFVKAELELTFPAAYPQEPPLFHYKGPRFDD
AVDFVLGADTLEPCRKENWNDTFSCSSLLTLVMELVKDKYPITESLVFDE
WESTLVQLCRSRLPGVPQRVKEGMIYFGVRLVPGSGGDTGTLKPTAGVGY
SDSSRASAFHDFSVPDARFKKHVETFARFLQLAKTATSVMLQRIQHVEMS
AWLWQ

mRNA from alignment at CM002463.1:822742..824696+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4521 ID=rna4521|Name=rna4521|organism=Nannochloropsis gaditana|type=mRNA|length=1955bp|location=Sequence derived from alignment at CM002463.1:822742..824696+ (Nannochloropsis gaditana)
ATGCAGAATGGGCTGAGCACGTGCGagtcgtcctccgccacacCCCCGCC
GTCGCTGGACTCCGAGGCGCTTCAGTCGCCGAAGCAAGGATACCGGGAGC
CTCAGGTGGAGCAGGGGGCCTCAGAGGCAGGAGGATCGTGCGAAGACATG
GctgtggacaaggaggggagggatgacgtCCGGCgcgacgtgggggagga
ggaggaggaggggctggaggagatggattcGGACGGCTACGAGTACGTGT
ACGAAgacagcgaggaggagggggaggggcaggaggagggcggcaagcCC
GAGGGCAGCCGGTCGAGAagtgcagggaggaaggcgcagCACGTGGTGTT
CTCGGGGCTGGACCGCATCGGCTGCACGAAGGACATGCTTTTGAAGAAGG
AGCTGACCCGCCTCAAGGCCGACGTGGAGTTGGGGAAGCGGGGCTGGAAC
GTGGATCTGAcgtgggcggaggcgacccggatgttgGGCGTGCGCCTGGA
GCATGAGGGCTTCGTCAAGGCGGAACTGGAGCTgaccttccccgccgcct
aCCCCCAGGagccccccctcttccactaCAAGGGGCCGCGCTTCGACGAC
GCGGTCGACTTCGTCCTCGGCGCCGACACCCTGGAGCCGTGCCGGAAGGA
GAACTGGAACGacaccttctcctgctcctcccttctgacGCTCGTGATGG
AGCTCGTCAAggtgcttccccccccccttcctctttcccctccctctcgc
cctccttccccttttcgtcctttcccccgtaaccagcccccccctttctc
caggACAAGTACCCAATCACAGAGAGCCTGGTCTTCGACGAGTGGGAGAG
CACTCTGGTGCAGCTCTGccgctcccgccttcccggcGTTCCGCagcggg
tgaaggagggcatgatATATTTCGGCGTCCGGCTTGTGCCCGGCAGCGGC
GGGGACACGGGCACTTTGAAGCCCACGGCCGGCGTGGGGTACTCGGACAG
CAGCCGCGCCAGCGCCTTTCACGACTTCTCCGTCCCGGACGCCCGCTTCA
AGAAGCACGTGGAGActttcgcgcgctttttgCAGTTGGCGAAAACGGCC
ACGTCGGTCATGCTCCAGAGGATCCAGCACGTGGAGATGAGCGCCTGGCT
TTGGCAGTACgttgaggaggagctgcccATCTTCCGATATGAGGAAGTGC
ACGAcatggtgggggaggcgctTCGGCTGATCcgggaggccggagggggg
gaggaggaggggctccGGCGTGTGGAGGAGATCTACAATGAGCGGGCGCG
GTTGCTCaggccggagagggaggggaaggagggaggcttgaggagcaaga
ggaagggaacggggggggcgggttGTGTCCGGGGGAggcactgggaggag
ggggaggagggggaggacgaggaagagggggaggagggggaggaggggct
ggtgCGAAGGCGAGGCCGTGGGAAGGAGTACGTGTtctcggtggaggaag
acttCGTCTCGCACTACTTCATGACGCCGGCgcacgggcaaggaggagga
ggggaagcagggggggggagggggaggggctggaggggggccggggacgt
ccggaggagggacaggggcagcagcctccacctccagcgccccctccggc
ccggccccgccgcccctctcccgcgcGGTCATGAAGCGGATcatgctgga
ggtggagaaccTGAAGGACCACCTGCGGAACATGACGGACGGCCAGATCT
TCGTCTGCTTCTCGgaggtctccctcctcctctggaaggtcctcttcctc
ccctcctctggcACCCCCTACTTCGGGGGCTGCTTCGAGTTCCACCTGAG
CATTCCCCCTGACTACCCCAACCACCCGCCCAAGTGCGTCTTCGTCAcca
ccggggggggggaggtccgCTTCAACCCGAACCTATACCACAACGGAAAA
ggtga

Coding sequence (CDS) from alignment at CM002463.1:822742..824696+

>rna4521 ID=rna4521|Name=rna4521|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002463.1:822742..824696+ (Nannochloropsis gaditana)
ATGCAGAATGGGCTGAGCACGTGCGagtcgtcctccgccacacCCCCGCC
GTCGCTGGACTCCGAGGCGCTTCAGTCGCCGAAGCAAGGATACCGGGAGC
CTCAGGTGGAGCAGGGGGCCTCAGAGGCAGGAGGATCGTGCGAAGACATG
GctgtggacaaggaggggagggatgacgtCCGGCgcgacgtgggggagga
ggaggaggaggggctggaggagatggattcGGACGGCTACGAGTACGTGT
ACGAAgacagcgaggaggagggggaggggcaggaggagggcggcaagcCC
GAGGGCAGCCGGTCGAGAagtgcagggaggaaggcgcagCACGTGGTGTT
CTCGGGGCTGGACCGCATCGGCTGCACGAAGGACATGCTTTTGAAGAAGG
AGCTGACCCGCCTCAAGGCCGACGTGGAGTTGGGGAAGCGGGGCTGGAAC
GTGGATCTGAcgtgggcggaggcgacccggatgttgGGCGTGCGCCTGGA
GCATGAGGGCTTCGTCAAGGCGGAACTGGAGCTgaccttccccgccgcct
aCCCCCAGGagccccccctcttccactaCAAGGGGCCGCGCTTCGACGAC
GCGGTCGACTTCGTCCTCGGCGCCGACACCCTGGAGCCGTGCCGGAAGGA
GAACTGGAACGacaccttctcctgctcctcccttctgacGCTCGTGATGG
AGCTCGTCAAggACAAGTACCCAATCACAGAGAGCCTGGTCTTCGACGAG
TGGGAGAGCACTCTGGTGCAGCTCTGccgctcccgccttcccggcGTTCC
GCagcgggtgaaggagggcatgatATATTTCGGCGTCCGGCTTGTGCCCG
GCAGCGGCGGGGACACGGGCACTTTGAAGCCCACGGCCGGCGTGGGGTAC
TCGGACAGCAGCCGCGCCAGCGCCTTTCACGACTTCTCCGTCCCGGACGC
CCGCTTCAAGAAGCACGTGGAGActttcgcgcgctttttgCAGTTGGCGA
AAACGGCCACGTCGGTCATGCTCCAGAGGATCCAGCACGTGGAGATGAGC
GCCTGGCTTTGGCAgtgaATGCAGAATGGGCTGAGCACGTGCGagtcgtc
ctccgccacacCCCCGCCGTCGCTGGACTCCGAGGCGCTTCAGTCGCCGA
AGCAAGGATACCGGGAGCCTCAGGTGGAGCAGGGGGCCTCAGAGGCAGGA
GGATCGTGCGAAGACATGGctgtggacaaggaggggagggatgacgtCCG
GCgcgacgtgggggaggaggaggaggaggggctggaggagatggattcGG
ACGGCTACGAGTACGTGTACGAAgacagcgaggaggagggggaggggcag
gaggagggcggcaagcCCGAGGGCAGCCGGTCGAGAagtgcagggaggaa
ggcgcagCACGTGGTGTTCTCGGGGCTGGACCGCATCGGCTGCACGAAGG
ACATGCTTTTGAAGAAGGAGCTGACCCGCCTCAAGGCCGACGTGGAGTTG
GGGAAGCGGGGCTGGAACGTGGATCTGAcgtgggcggaggcgacccggat
gttgGGCGTGCGCCTGGAGCATGAGGGCTTCGTCAAGGCGGAACTGGAGC
TgaccttccccgccgcctaCCCCCAGGagccccccctcttccactaCAAG
GGGCCGCGCTTCGACGACGCGGTCGACTTCGTCCTCGGCGCCGACACCCT
GGAGCCGTGCCGGAAGGAGAACTGGAACGacaccttctcctgctcctccc
ttctgacGCTCGTGATGGAGCTCGTCAAggACAAGTACCCAATCACAGAG
AGCCTGGTCTTCGACGAGTGGGAGAGCACTCTGGTGCAGCTCTGccgctc
ccgccttcccggcGTTCCGCagcgggtgaaggagggcatgatATATTTCG
GCGTCCGGCTTGTGCCCGGCAGCGGCGGGGACACGGGCACTTTGAAGCCC
ACGGCCGGCGTGGGGTACTCGGACAGCAGCCGCGCCAGCGCCTTTCACGA
CTTCTCCGTCCCGGACGCCCGCTTCAAGAAGCACGTGGAGActttcgcgc
gctttttgCAGTTGGCGAAAACGGCCACGTCGGTCATGCTCCAGAGGATC
CAGCACGTGGAGATGAGCGCCTGGCTTTGGCAgtgaATGCAGAATGGGCT
GAGCACGTGCGagtcgtcctccgccacacCCCCGCCGTCGCTGGACTCCG
AGGCGCTTCAGTCGCCGAAGCAAGGATACCGGGAGCCTCAGGTGGAGCAG
GGGGCCTCAGAGGCAGGAGGATCGTGCGAAGACATGGctgtggacaagga
ggggagggatgacgtCCGGCgcgacgtgggggaggaggaggaggaggggc
tggaggagatggattcGGACGGCTACGAGTACGTGTACGAAgacagcgag
gaggagggggaggggcaggaggagggcggcaagcCCGAGGGCAGCCGGTC
GAGAagtgcagggaggaaggcgcagCACGTGGTGTTCTCGGGGCTGGACC
GCATCGGCTGCACGAAGGACATGCTTTTGAAGAAGGAGCTGACCCGCCTC
AAGGCCGACGTGGAGTTGGGGAAGCGGGGCTGGAACGTGGATCTGAcgtg
ggcggaggcgacccggatgttgGGCGTGCGCCTGGAGCATGAGGGCTTCG
TCAAGGCGGAACTGGAGCTgaccttccccgccgcctaCCCCCAGGagccc
cccctcttccactaCAAGGGGCCGCGCTTCGACGACGCGGTCGACTTCGT
CCTCGGCGCCGACACCCTGGAGCCGTGCCGGAAGGAGAACTGGAACGaca
ccttctcctgctcctcccttctgacGCTCGTGATGGAGCTCGTCAAggAC
AAGTACCCAATCACAGAGAGCCTGGTCTTCGACGAGTGGGAGAGCACTCT
GGTGCAGCTCTGccgctcccgccttcccggcGTTCCGCagcgggtgaagg
agggcatgatATATTTCGGCGTCCGGCTTGTGCCCGGCAGCGGCGGGGAC
ACGGGCACTTTGAAGCCCACGGCCGGCGTGGGGTACTCGGACAGCAGCCG
CGCCAGCGCCTTTCACGACTTCTCCGTCCCGGACGCCCGCTTCAAGAAGC
ACGTGGAGActttcgcgcgctttttgCAGTTGGCGAAAACGGCCACGTCG
GTCATGCTCCAGAGGATCCAGCACGTGGAGATGAGCGCCTGGCTTTGGCA
gtga

Synonyms

Publications