EWM26166.1, cds4510 (CDS) Nannochloropsis gaditana

Overview
NameEWM26166.1
Unique Namecds4510
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:822742..823452 +
Alignment locationCM002463.1:823545..823897 +
Alignment locationCM002463.1:824693..824696 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26166.1
ProductUbiquitin-conjugating enzyme/RWD
Orig transcript idgnl|cribi|Naga_100121g13.10138.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:822742..823452 +
CM002463.1supercontigCM002463.1:823545..823897 +
CM002463.1supercontigCM002463.1:824693..824696 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
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BLAST of EWM26166.1 vs. NCBI_GenBank
Match: gi|585108162|gb|EWM26166.1| (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana])

HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0 
Query:    1 MQNGLSTCESSSATPPPSLDSEALQSPKQGYREPQVEQGASEAGGSCEDMAVDKEGRDDVRRDVGEEEEEGLEEMDSDGYEYVYEDSEEEGEGQEEGGKPEGSRSRSAGRKAQHVVFSGLDRIGCTKDMLLKKELTRLKADVELGKRGWNVDLTWAEATRMLGVRLEHEGFVKAELELTFPAAYPQEPPLFHYKGPRFDDAVDFVLGADTLEPCRKENWNDTFSCSSLLTLVMELVKDKYPITESLVFDEWESTLVQLCRSRLPGVPQRVKEGMIYFGVRLVPGSGGDTGTLKPTAGVGYSDSSRASAFHDFSVPDARFKKHVETFARFLQLAKTATSVMLQRIQHVEMSAWLWQ 355
            MQNGLSTCESSSATPPPSLDSEALQSPKQGYREPQVEQGASEAGGSCEDMAVDKEGRDDVRRDVGEEEEEGLEEMDSDGYEYVYEDSEEEGEGQEEGGKPEGSRSRSAGRKAQHVVFSGLDRIGCTKDMLLKKELTRLKADVELGKRGWNVDLTWAEATRMLGVRLEHEGFVKAELELTFPAAYPQEPPLFHYKGPRFDDAVDFVLGADTLEPCRKENWNDTFSCSSLLTLVMELVKDKYPITESLVFDEWESTLVQLCRSRLPGVPQRVKEGMIYFGVRLVPGSGGDTGTLKPTAGVGYSDSSRASAFHDFSVPDARFKKHVETFARFLQLAKTATSVMLQRIQHVEMSAWLWQ
Sbjct:    1 MQNGLSTCESSSATPPPSLDSEALQSPKQGYREPQVEQGASEAGGSCEDMAVDKEGRDDVRRDVGEEEEEGLEEMDSDGYEYVYEDSEEEGEGQEEGGKPEGSRSRSAGRKAQHVVFSGLDRIGCTKDMLLKKELTRLKADVELGKRGWNVDLTWAEATRMLGVRLEHEGFVKAELELTFPAAYPQEPPLFHYKGPRFDDAVDFVLGADTLEPCRKENWNDTFSCSSLLTLVMELVKDKYPITESLVFDEWESTLVQLCRSRLPGVPQRVKEGMIYFGVRLVPGSGGDTGTLKPTAGVGYSDSSRASAFHDFSVPDARFKKHVETFARFLQLAKTATSVMLQRIQHVEMSAWLWQ 355
The following BLAST results are available for this feature:
BLAST of EWM26166.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108162|gb|EWM26166.1|0.000e+0100.00Ubiquitin-conjugating enzyme/RWD [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4521rna4521Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications