rna4520, rna4520 (mRNA) Nannochloropsis gaditana

Overview
Namerna4520
Unique Namerna4520
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length567
Alignment locationCM002463.1:821370..821749 -

Link to JBrowse

Properties
Property NameValue
Productshq1 like protein
Orig transcript idgnl|cribi|Naga_100121g12.10142.mrna
Orig protein idgnl|cribi|Naga_100121g12.10142
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:821370..821749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100121g12gene4362Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4520rna4520-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26170.1cds4509Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4520 ID=rna4520|Name=rna4520|organism=Nannochloropsis gaditana|type=mRNA|length=567bp
ATGTTGCTCCGGTGCTTATTACGGATGCGGAGGGTCTTCCGTCTCACGGA
AACGCATTACTTGCTGAATCGATTGTTCCTGGACGATTACTGCGTATGTT
TGCAGCTGCCGGAGGGCGACAAAATCGTGTGGGAGCTGGCGGAGGCCTGG
CGAGAGGGGGCGAAGGGGGTAGAAAAGGCGGAGGTGGGTTTGGGGCTGAT
TGAATTGGAGGCATTGGCTGCGCAGGGGGGGGCTGAGGAGGAGGACGAGG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATGATGATGATGATGATGATAAAAGTAGCGAACAGGAGGAGGAAGA
AGAGACAGAGAGTGGTGAAAAGGCAGAGGCTAGAGATCGAGAGTGGGTCA
TCGACGCTTTCGCGGCTACTGAACGTGCCGATGGGCCCTGGCGGAGAGGA
GGGAAGGGGGAGAGGGGGCGCATGCGCAGGGCAGAAGAGGGAAAAGCCAT
TAGTCGAGGAGCTCTGAGAGACCGCACGGACCTAGCACCGAGCACGGCAA
TAACATATAAAACGTAA
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protein sequence of rna4520

>rna4520-protein ID=rna4520-protein|Name=rna4520|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGR
DFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR
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mRNA from alignment at CM002463.1:821370..821749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4520 ID=rna4520|Name=rna4520|organism=Nannochloropsis gaditana|type=mRNA|length=380bp|location=Sequence derived from alignment at CM002463.1:821370..821749- (Nannochloropsis gaditana)
ATGCAGGCCCATCCCCCTCCTTCACCACCTCCCCCGCTAGCAATGTTGGT
GCCACGCTTTTCCCTTCAGCAAACCCCGAATACCGTCATAGTAACCATTA
AGTTGCCTTACATCCGTGTAGGTGACGCGGAAGTCTCTGCGGTAGGTTTT
CCTTCTGGTACGAGGGGTTTGTCATTTATTTTAACTCTCGCCTACGGCTC
CCGCATCGTTTGTCGCAGGATGGCCGTGACTTTGTATTTTATTGCAGGCC
CTACCTCTTAAAGCTTCAGTTCCCACACGCCCTCAAGAACAATGAAGACG
AAGAGAGTCATTGCCGCGCGGTCTATGACGCTAATTTGGTGAGTGGAGCA
GGTCTCCCGTCCCCGTGCACAGGTCGATAG
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Coding sequence (CDS) from alignment at CM002463.1:821370..821749-

>rna4520 ID=rna4520|Name=rna4520|organism=Nannochloropsis gaditana|type=CDS|length=606bp|location=Sequence derived from alignment at CM002463.1:821370..821749- (Nannochloropsis gaditana)
GATGGCCGTGACTTTGTATTTTATTGCAGGCCCTACCTCTTAAAGCTTCA
GTTCCCACACGCCCTCAAGAACAATGAAGACGAAGAGAGTCATTGCCGCG
CGGTCTATGACGCTAATTTGGTGAGTGGAGCAGGTCTCCCGTCCCCGTGC
ACAGGTCGATAGATGCAGGCCCATCCCCCTCCTTCACCACCTCCCCCGCT
AGCAATGTTGGTGCCACGCTTTTCCCTTCAGCAAACCCCGAATACCGTCA
TAGTAACCATTAAGTTGCCTTACATCCGTGTAGGTGACGCGGAAGTCTCT
GCGGATGGCCGTGACTTTGTATTTTATTGCAGGCCCTACCTCTTAAAGCT
TCAGTTCCCACACGCCCTCAAGAACAATGAAGACGAAGAGAGTCATTGCC
GCGCGGTCTATGACGCTAATTTGGTGAGTGGAGCAGGTCTCCCGTCCCCG
TGCACAGGTCGATAGATGCAGGCCCATCCCCCTCCTTCACCACCTCCCCC
GCTAGCAATGTTGGTGCCACGCTTTTCCCTTCAGCAAACCCCGAATACCG
TCATAGTAACCATTAAGTTGCCTTACATCCGTGTAGGTGACGCGGAAGTC
TCTGCG
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Synonyms
Publications