EWM26170.1, cds4509 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|585108166|gb|EWM26170.1| (shq1 like protein [Nannochloropsis gaditana]) HSP 1 Score: 207.608 bits (527), Expect = 5.282e-68 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query: 1 MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR 100
MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR
Sbjct: 1 MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR 100
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|553179740|ref|XP_005852755.1| (shq1-like protein [Nannochloropsis gaditana CCMP526] >gi|422295779|gb|EKU23078.1| shq1-like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 95.5153 bits (236), Expect = 2.984e-22 Identity = 51/77 (66.23%), Postives = 51/77 (66.23%), Query Frame = 0
Query: 15 MLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGA 91
MLVPRFSLQQTPNTVIVT K RPYLLKLQFPHALKNNEDEESHCRAVYDANL G
Sbjct: 1 MLVPRFSLQQTPNTVIVTRK--------------------SLRPYLLKLQFPHALKNNEDEESHCRAVYDANLDHGT 57
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|325189290|emb|CCA23810.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 78.9518 bits (193), Expect = 4.272e-15 Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0
Query: 18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSG---AGLP 94
PRF + Q V V I++PY+RV D E + DG DF FYC+PYLLKL F H L +NE+ +AVYD + +G A LP
Sbjct: 5 PRFRVTQNAQFVYVHIRVPYVRVSDMEFNIDGSDFTFYCKPYLLKLHFSHNLVDNEN----AKAVYDPSADNGTIIAHLP 80
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|299470263|emb|CBN79567.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 78.1814 bits (191), Expect = 9.998e-15 Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0
Query: 18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYD 84
PRF + QT V+V IK+P+IRVG AE DG +F FYC+PYLL+L P+ + ED++ C+AVYD
Sbjct: 5 PRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEV-GGEDDDGSCKAVYD 70
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|950899138|ref|XP_014529779.1| (hypothetical protein JH06_2055 [Blastocystis sp. subtype 4] >gi|902864392|gb|KNB46338.1| hypothetical protein JH06_2055 [Blastocystis sp. subtype 4]) HSP 1 Score: 74.7146 bits (182), Expect = 3.235e-14 Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0
Query: 16 LVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAG 92
L P+FS+ Q VIV I +P++RVGD E D DF F+C PYLLKLQFP+ ++E +AVYD + V G
Sbjct: 3 LTPKFSISQNDEFVIVEINVPWVRVGDMEFVIDDCDFSFFCNPYLLKLQFPYPCVDDE----RAKAVYDVDKVLAKG 75
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|635361213|emb|CCI49770.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 75.8702 bits (185), Expect = 6.645e-14 Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 0
Query: 18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSG---AGLP 94
PRF + Q V V I++PY+RV D E DG DF FYC+PYLLKL F H L ++E+ +AVYD + +G A LP
Sbjct: 5 PRFRVTQNAQFVYVHIRVPYVRVSDMEFHIDGPDFTFYCKPYLLKLHFSHNLVDDEN----AKAVYDPSADNGTIIAHLP 80
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|1032150292|gb|OAO14089.1| (protein SHQ1 [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 72.4034 bits (176), Expect = 1.045e-12 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query: 16 LVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGA---GLPSPCTGR 100
+ P+FS+ Q VI+ I +P++RVGD E DG +F F+C PYLLKLQFP+ ++E +AVYD + +G +P GR
Sbjct: 3 VTPKFSISQDDEFVIIEINVPWVRVGDMEFVVDGCEFSFFCNPYLLKLQFPYPCIDDE----RAKAVYDMDKDNGTIFVHVPKEEKGR 86
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|953498306|emb|CEG40303.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 71.2478 bits (173), Expect = 2.085e-12 Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSG 90
P+F + Q V V + +PY+RV D E DG DF FYC+PYLLKL FP+ + ++E +AVYD N +G
Sbjct: 5 PKFHVTQDTTWVFVHVHVPYVRVSDMEFYVDGVDFTFYCKPYLLKLHFPYEVMDDE----LAKAVYDPNKDNG 73
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|1068395374|ref|XP_018046304.1| (PREDICTED: protein SHQ1 homolog isoform X3 [Atta colombica]) HSP 1 Score: 70.4774 bits (171), Expect = 3.928e-12 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 0
Query: 15 MLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNE 73
ML PRF + QT V + I PY + DAE+ ADG DF+FY PY LKLQ P +K+N+
Sbjct: 1 MLTPRFGITQTDEVVTIIIHAPYANIKDAEMYADGIDFLFYSTPYFLKLQLPGKIKDND 59
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|1068395370|ref|XP_018046303.1| (PREDICTED: protein SHQ1 homolog isoform X2 [Atta colombica]) HSP 1 Score: 70.4774 bits (171), Expect = 3.935e-12 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 0
Query: 15 MLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNE 73
ML PRF + QT V + I PY + DAE+ ADG DF+FY PY LKLQ P +K+N+
Sbjct: 1 MLTPRFGITQTDEVVTIIIHAPYANIKDAEMYADGIDFLFYSTPYFLKLQLPGKIKDND 59 The following BLAST results are available for this feature:
BLAST of EWM26170.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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