EWM26170.1, cds4509 (CDS) Nannochloropsis gaditana

Overview
NameEWM26170.1
Unique Namecds4509
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:821609..821749 -
Alignment locationCM002463.1:821370..821531 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26170.1
Productshq1 like protein
Orig transcript idgnl|cribi|Naga_100121g12.10142.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:821609..821749 -
CM002463.1supercontigCM002463.1:821370..821531 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
Homology
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|585108166|gb|EWM26170.1| (shq1 like protein [Nannochloropsis gaditana])

HSP 1 Score: 207.608 bits (527), Expect = 5.282e-68
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR 100
            MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR
Sbjct:    1 MQAHPPPSPPPPLAMLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAGLPSPCTGR 100          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|553179740|ref|XP_005852755.1| (shq1-like protein [Nannochloropsis gaditana CCMP526] >gi|422295779|gb|EKU23078.1| shq1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.5153 bits (236), Expect = 2.984e-22
Identity = 51/77 (66.23%), Postives = 51/77 (66.23%), Query Frame = 0
Query:   15 MLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGA 91
            MLVPRFSLQQTPNTVIVT K                      RPYLLKLQFPHALKNNEDEESHCRAVYDANL  G 
Sbjct:    1 MLVPRFSLQQTPNTVIVTRK--------------------SLRPYLLKLQFPHALKNNEDEESHCRAVYDANLDHGT 57          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|325189290|emb|CCA23810.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 78.9518 bits (193), Expect = 4.272e-15
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSG---AGLP 94
            PRF + Q    V V I++PY+RV D E + DG DF FYC+PYLLKL F H L +NE+     +AVYD +  +G   A LP
Sbjct:    5 PRFRVTQNAQFVYVHIRVPYVRVSDMEFNIDGSDFTFYCKPYLLKLHFSHNLVDNEN----AKAVYDPSADNGTIIAHLP 80          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|299470263|emb|CBN79567.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.1814 bits (191), Expect = 9.998e-15
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0
Query:   18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYD 84
            PRF + QT   V+V IK+P+IRVG AE   DG +F FYC+PYLL+L  P+ +   ED++  C+AVYD
Sbjct:    5 PRFKVSQTDLAVVVCIKVPHIRVGSAETHVDGTEFSFYCKPYLLRLTLPYEV-GGEDDDGSCKAVYD 70          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|950899138|ref|XP_014529779.1| (hypothetical protein JH06_2055 [Blastocystis sp. subtype 4] >gi|902864392|gb|KNB46338.1| hypothetical protein JH06_2055 [Blastocystis sp. subtype 4])

HSP 1 Score: 74.7146 bits (182), Expect = 3.235e-14
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   16 LVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGAG 92
            L P+FS+ Q    VIV I +P++RVGD E   D  DF F+C PYLLKLQFP+   ++E      +AVYD + V   G
Sbjct:    3 LTPKFSISQNDEFVIVEINVPWVRVGDMEFVIDDCDFSFFCNPYLLKLQFPYPCVDDE----RAKAVYDVDKVLAKG 75          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|635361213|emb|CCI49770.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 75.8702 bits (185), Expect = 6.645e-14
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 0
Query:   18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSG---AGLP 94
            PRF + Q    V V I++PY+RV D E   DG DF FYC+PYLLKL F H L ++E+     +AVYD +  +G   A LP
Sbjct:    5 PRFRVTQNAQFVYVHIRVPYVRVSDMEFHIDGPDFTFYCKPYLLKLHFSHNLVDDEN----AKAVYDPSADNGTIIAHLP 80          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|1032150292|gb|OAO14089.1| (protein SHQ1 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 72.4034 bits (176), Expect = 1.045e-12
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query:   16 LVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSGA---GLPSPCTGR 100
            + P+FS+ Q    VI+ I +P++RVGD E   DG +F F+C PYLLKLQFP+   ++E      +AVYD +  +G     +P    GR
Sbjct:    3 VTPKFSISQDDEFVIIEINVPWVRVGDMEFVVDGCEFSFFCNPYLLKLQFPYPCIDDE----RAKAVYDMDKDNGTIFVHVPKEEKGR 86          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|953498306|emb|CEG40303.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 71.2478 bits (173), Expect = 2.085e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   18 PRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNEDEESHCRAVYDANLVSG 90
            P+F + Q    V V + +PY+RV D E   DG DF FYC+PYLLKL FP+ + ++E      +AVYD N  +G
Sbjct:    5 PKFHVTQDTTWVFVHVHVPYVRVSDMEFYVDGVDFTFYCKPYLLKLHFPYEVMDDE----LAKAVYDPNKDNG 73          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|1068395374|ref|XP_018046304.1| (PREDICTED: protein SHQ1 homolog isoform X3 [Atta colombica])

HSP 1 Score: 70.4774 bits (171), Expect = 3.928e-12
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 0
Query:   15 MLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNE 73
            ML PRF + QT   V + I  PY  + DAE+ ADG DF+FY  PY LKLQ P  +K+N+
Sbjct:    1 MLTPRFGITQTDEVVTIIIHAPYANIKDAEMYADGIDFLFYSTPYFLKLQLPGKIKDND 59          
BLAST of EWM26170.1 vs. NCBI_GenBank
Match: gi|1068395370|ref|XP_018046303.1| (PREDICTED: protein SHQ1 homolog isoform X2 [Atta colombica])

HSP 1 Score: 70.4774 bits (171), Expect = 3.935e-12
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 0
Query:   15 MLVPRFSLQQTPNTVIVTIKLPYIRVGDAEVSADGRDFVFYCRPYLLKLQFPHALKNNE 73
            ML PRF + QT   V + I  PY  + DAE+ ADG DF+FY  PY LKLQ P  +K+N+
Sbjct:    1 MLTPRFGITQTDEVVTIIIHAPYANIKDAEMYADGIDFLFYSTPYFLKLQLPGKIKDND 59          
The following BLAST results are available for this feature:
BLAST of EWM26170.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108166|gb|EWM26170.1|5.282e-68100.00shq1 like protein [Nannochloropsis gaditana][more]
gi|553179740|ref|XP_005852755.1|2.984e-2266.23shq1-like protein [Nannochloropsis gaditana CCMP52... [more]
gi|325189290|emb|CCA23810.1|4.272e-1548.75conserved hypothetical protein [Albugo laibachii N... [more]
gi|299470263|emb|CBN79567.1|9.998e-1552.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|950899138|ref|XP_014529779.1|3.235e-1446.75hypothetical protein JH06_2055 [Blastocystis sp. s... [more]
gi|635361213|emb|CCI49770.1|6.645e-1447.50unnamed protein product [Albugo candida][more]
gi|1032150292|gb|OAO14089.1|1.045e-1240.91protein SHQ1 [Blastocystis sp. ATCC 50177/Nand II][more]
gi|953498306|emb|CEG40303.1|2.085e-1245.21Uncharacterized conserved protein [Plasmopara hals... [more]
gi|1068395374|ref|XP_018046304.1|3.928e-1250.85PREDICTED: protein SHQ1 homolog isoform X3 [Atta c... [more]
gi|1068395370|ref|XP_018046303.1|3.935e-1250.85PREDICTED: protein SHQ1 homolog isoform X2 [Atta c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4520rna4520Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications