rna4519, rna4519 (mRNA) Nannochloropsis gaditana

Overview
Namerna4519
Unique Namerna4519
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2790
Alignment locationCM002463.1:819435..820234 -

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Properties
Property NameValue
ProductSHQ1 protein
Orig transcript idgnl|cribi|Naga_100121g11.10147.mrna
Orig protein idgnl|cribi|Naga_100121g11.10147
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:819435..820234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100121g11gene4361Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4519rna4519-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26175.1cds4508Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4519 ID=rna4519|Name=rna4519|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp
CTCACAGAGCACCACGCTCGGTGGCGGCATTGTATCAGTTCTGGCGCTTG
TCACGGACGCTCGTGGCGGGCATAACTGGTACGTTCTTCTAATACGAGGA
AAGATCGTATTCGAGTCCGCCTGCATAACCGCTTTTAAAAGCTGCTTCGA
CGTAATTGACCTGAAAGCCCCCCTTGCCCGCACGGCTTGATCATCGTTGC
AATGCAGAGAAGCATCTGAGTGTGAAGCTAGGTGCTTGTCTTCTGCCGCA
ATATGCCGCTGGTCTGCTCCCCTTCCCATACCATCGACGCAAGCCCCGGT
GGTCGGGCCGTAGAGCAATTCTTCCTCGCTTTCACATGTTTCATCATCAC
GACCACAGATCAATGACCGGCACCACCACGTCTGACGTTTCGCATTGGCC
GACTCGCCCAGCCGTTGTGCCCTTCTTCCTTTCTTTCCTCCTCGCCGTCT
TCTCCCTACTCCCCTCCGTCCTGGATGCCTTCCACCACCACCCCTCTCCC
CCCTCCCATGTCCCAGTTTCAACCGTCAGTCCGAGCCAAGGATGCAAACC
ACACACCACCCGCTTTATCTCTCGTCTCTCCGCCAGCAAGACAGACTACT
ATTCTGTGCTCGGCCTCTCCCCGGGGGCCACGCCCGCCGAGGTCAAGCGC
GCCTTCCGGGAGCGGGCCAAGACTACCCATCCGGACTCAAGCCGCAGCGC
GGACACCACGCAAGAATTTTTGGCCATCAAGGAGGCTTACGAAACGCTGT
ACGATGCCCGCCGACGCGCAGAGTTCGACCGGCGGCGGCAGTTGGCTGAA
GTGGCCGACTTGGCTGTGAGCGTCGGCGAGATCTTGACCCGCGACGTGGC
GGTCCCACTGGCCCGGGACGTTGCCCTCCCCCTTATCAAAACCGCCTTCG
AGGGACTCGACCAGACCGTGATCAAGCAGTTCGCCACCCCGATCCTCAAA
CGCACGCTCCAGCAGTCAGCGGCCGCTGTGGAGGCCGTGCGGCAGGTGGC
GCAAGACCGGGCGCAGTACTTCACGCAGGTGCAAGCCTCGTGGCGCGCGG
AGGAGATCCGATCTTTGACGCAGCAGCTGGAAGAGATGACGGCCAAGGCG
AAGGACGCGCGCGCGCAGGTCAAGGAGGCAGCCGGCTTCGTCTCGGAGGC
AGTAGACCGGGAAGGGGCCATCCAGGCCCGGTTGGAGGCGGTGGAGGCCG
CGAGTGAGTCCTCGGCGGCTGCCATGCAAGGGTTGCGGGAGGAGAGCAGG
CGGGCCCTATCCGATTTCCAGGAGAGGGTGGCAGAGGAAGCAGAGCGTCG
ACAAGCGGCACGCAGGCTGAAGACGGAAGAAACGCGGGTGCTGGCCGCCA
ACAAGCGCTTGGAGGCCTTCGCCCTGACCGCAGACGTGGAGGTGGCGGAG
GCGGAGGAGGTCCTGCGCCGGGCCCAAACGCGGATGGAGAAGGCCAGGCA
AGCGCGGGAAAGGGCGCAGGGCTTGTTGAAGACGAGTCAAGAGGAGGCGG
ACGGCGTGCAAGAACGGCTCTCACAGACCAGCCTGGACCTTCAGGAGGCT
TTGGCCGCGGTGGCCCCATCGCGGAGGGTCTGGCAGGAAGCTCAGGCGCG
CGAGGCGTCGTTGCTCGCTCAATTGAAAAGCCAGAGCAAGGAGGAGGCGG
CCCTGCGACAGGAACTGGCCATGGCCGTCCGAAGACGCGAGATGGCGCGC
CGGGAATTCCTGGCGGCCGAGCGGCGTACGGGCTTGTTCCAGAAGGGCGT
GATGGAGCTTGCCGGACAGATAGAGCGCAAGTACAACGAGGCTCTGGCCG
GCTCCGGGATAACGAGCACGTCGGGCGCTACGTCCGCCGCGGCAGCGTCG
GAAGCAGGGCAGGACCTGGGAAGGAGGACGGGGCCAGAGACAGGAGTCGG
AAAAGAAGTGTCGGGAGAGGCGCGCATGCGGCGGCAACGCGAGGCGTTTG
ACCTCGTCTTTGGGAGCATACGGAAGCGGTCGCGGGGCCCGACACAGGGG
AAAAAGACAGACACAGCGGTGGAGGAGGGCGTGGGCCCGGGCAGCAACGA
CGATCCAGCGACGTCTGGAGATTGGGACTCCTCCGAGGAACCAGGAGAGC
CACTGGAGGAGGCGTCAAGCGTGCAAGCACCTGCTGCGTCGACGGCTGCG
GCCCCCCGGGCGGAGCCCGAAAAGCCAGTAGAGGGGGGAGGGGCTCAGGA
AATGGAACGTGATCCCGCCCAGCAGGAGCTGCAGGGCGTGGGAAGATGAC
ATCGGTTGCGTCAAGTCCTCGGAACTCGCGGCGGGTGTGAAGGTTAGGGA
ACTTGAGAGTGTGAGAGTGGTCAGCTTACTGGGTATGGGGCGTTCTCAGA
GGCTTTTGGGCTCCAGTGCCAGATAAGCGAGCAGTCCAGGTCAAAAACGA
CGAGCAAGATCTTTGTTGTGGGTGCGTTCGTGTATGTAGATTGTGTACTG
AATAGATGTAGCCCCTCGCCGTACCGTGTGGGCGCTCTTAGGCTTCCAGG
ACGGAAGAACTTTGCTAGAAGAGCAGAAAGGAGGGAAAGAAGGGAAAAAC
GGCGTGCCGCGGGTAGAAGCTTTGTATGAGGGCTTTGCGGTGCATGCGTG
GAAATGGTAACAACGAGGGAGACGCGGTCCGCTTGTTGAATTGGGAATTC
TCCACTCTCAAGGAGGGGGGGGGCGGAGGAGTAGGGTGTAGGCAGGCAAG
TAACAACGAGAAAGGTGAGATGGCCAACCTGGTCTCTTCCCCACCGTCGC
ACATCACATAGTGAATCAAGGCATAGATAAATTTTGGAGG
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protein sequence of rna4519

>rna4519-protein ID=rna4519-protein|Name=rna4519|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MLLRCLLRMRRVFRLTETHYLLNRLFLDDYCVCLQLPEGDKIVWELAEAW
REGAKGVEKAEVGLGLIELEALAAQGGAEEEDEDDDDDDDDDDDDDDDDD
DDDDDDDDKSSEQEEEEETESGEKAEARDREWVIDAFAATERADGPWRRG
GKGERGRMRRAEEGKAISRGALRDRTDLAPSTAITYKT
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mRNA from alignment at CM002463.1:819435..820234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4519 ID=rna4519|Name=rna4519|organism=Nannochloropsis gaditana|type=mRNA|length=800bp|location=Sequence derived from alignment at CM002463.1:819435..820234- (Nannochloropsis gaditana)
ATGTTGCTCCGGTGCTTATTACGGATGCGGAGGGTCTTCCGTCTCACGGA
AACGCATTACTTGCTGAATCGATTGTTCCTGGACGATTACTGCGTATGTT
TGCAGCTGCCGGAGGGCGACAAAATCGTGTGGGAGCTGGCGGAGGCCTGG
CGAGAGGGGGCGAAGGGGGTAGAAAAGGCGGAGGTGGGTTTGGGGCTGAT
TGAATTGGAGGCATTGGCTGCGCAGGGGGGGGCTGAGGAGGAGGACGAGG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATGATGATGATGATGATGATAAAAGTAGCGAACAGGAGGAGGAAGA
AGAGACAGAGAGTGGTGAAAGTGAGGAGGAGGACAGCGAAGAGGAAGAAG
ACAGCGAGGGGGAGGAAGAGGAGGAAGGCAAGGCAGGTGCTGAGCAGGAT
GCGAGGGGCGGGGGAAAGGTAGTATTAGTGGGCGATGGAGGAAGAAGAGC
CGCCCTTGAGCGGCGCTTGGAAGGTCTCTCCTTAGGGGATGGGCCCAAGG
AGACGGACGGAGGCCTGACTGAAGGACTCGCGTCCCTCTCCATGGACCCC
AAGAGGCAGAGGCTAGAGATCGAGAGTGGGTCATCGACGCTTTCGCGGCT
ACTGAACGTGCCGATGGGCCCTGGCGGAGAGGAGGGAAGGGGGAGAGGGG
GCGCATGCGCAGGGCAGAAGAGGGAAAAGCCATTAGTCGAGGAGCTCTGA
GAGACCGCACGGACCTAGCACCGAGCACGGCAATAACATATAAAACGTAA
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Coding sequence (CDS) from alignment at CM002463.1:819435..820234-

>rna4519 ID=rna4519|Name=rna4519|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at CM002463.1:819435..820234- (Nannochloropsis gaditana)
AGGCAGAGGCTAGAGATCGAGAGTGGGTCATCGACGCTTTCGCGGCTACT
GAACGTGCCGATGGGCCCTGGCGGAGAGGAGGGAAGGGGGAGAGGGGGCG
CATGCGCAGGGCAGAAGAGGGAAAAGCCATTAGTCGAGGAGCTCTGAGAG
ACCGCACGGACCTAGCACCGAGCACGGCAATAACATATAAAACGTAAATG
TTGCTCCGGTGCTTATTACGGATGCGGAGGGTCTTCCGTCTCACGGAAAC
GCATTACTTGCTGAATCGATTGTTCCTGGACGATTACTGCGTATGTTTGC
AGCTGCCGGAGGGCGACAAAATCGTGTGGGAGCTGGCGGAGGCCTGGCGA
GAGGGGGCGAAGGGGGTAGAAAAGGCGGAGGTGGGTTTGGGGCTGATTGA
ATTGGAGGCATTGGCTGCGCAGGGGGGGGCTGAGGAGGAGGACGAGGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATGATGATGATGATGATAAAAGTAGCGAACAGGAGGAGGAAGAAGA
GACAGAGAGTGGTGAAAAGGCAGAGGCTAGAGATCGAGAGTGGGTCATCG
ACGCTTTCGCGGCTACTGAACGTGCCGATGGGCCCTGGCGGAGAGGAGGG
AAGGGGGAGAGGGGGCGCATGCGCAGGGCAGAAGAGGGAAAAGCCATTAG
TCGAGGAGCTCTGAGAGACCGCACGGACCTAGCACCGAGCACGGCAATAA
CATATAAAACGTAAATGTTGCTCCGGTGCTTATTACGGATGCGGAGGGTC
TTCCGTCTCACGGAAACGCATTACTTGCTGAATCGATTGTTCCTGGACGA
TTACTGCGTATGTTTGCAGCTGCCGGAGGGCGACAAAATCGTGTGGGAGC
TGGCGGAGGCCTGGCGAGAGGGGGCGAAGGGGGTAGAAAAGGCGGAGGTG
GGTTTGGGGCTGATTGAATTGGAGGCATTGGCTGCGCAGGGGGGGGCTGA
GGAGGAGGACGAGGATGATGATGATGATGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATAAAAGTAGCGAA
CAGGAGGAGGAAGAAGAGACAGAGAGTGGTGAAA
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Synonyms
Publications