rna4518, rna4518 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4518
Unique Name	rna4518
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1377
Alignment location	CM002463.1:816523..819414 +

Link to JBrowse

Properties


Property Name	Value
Product	chaperone protein dnaj
Orig transcript id	gnl\|cribi\|Naga_100121g10.10135.mrna
Orig protein id	gnl\|cribi\|Naga_100121g10.10135
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:816523..819414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100121g10	gene4360	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4518	rna4518-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26163.1	cds4507	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:816523..819414+
coding sequence from alignment at CM002463.1:816523..819414+

mRNA sequence

>rna4518 ID=rna4518|Name=rna4518|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGGCAGCGCAGGGCAGCAGGACAAGGAAACGAAGCAGAACATCGGGCTT
GCCCCTATGTCTTCTAGCCACTCGACTACGGCTTTCAGGAGCCTGTAACC
TCGCAGTATTTTTCTCCTTCTTTTTAAGCCTCAAACTTTCTTACGCATTC
ATGTCCATAGCGCCGAAGCTACCGCATAGATCCCGGGCGGGCCTGCCTCT
CGACCCGCATGCCGCGTTTTATTACCTTGTCCACTCACCCCCCTCCCCCT
TAATCTCAAGTCCAATAATGTCCGCCATGAATTCTGGTTGGCGGAGTGGA
CCTCGTCCCAGTGATGAGCCTGTCGACTTGTCCGGAGACGGGGGTGTGTT
AAAAACTGTGCTACGGCCCGGCTACGGGTACAACCAGCAAACTCCACCGC
CTCATTCCTACTGCAAGGTAGCTTTTGTCATGAAAACATCCACGGGGCAG
TTGATAGCAAACCGGATGAAGAAACCGATGGAATTTATGCTGGGCCTGGC
AAACCCGGAAGTGATCCGCGGCTGGGAGATGGCCGTGGCGACCATGAAGC
CCAACGAGGTTGCCGAGATCACGTGCAGTCCCGAGTATGCCTTCGGGTCG
GCAGAGGGGTACCAAGACAAGATTCCCCCCGGCGCCATCATCGTCACGCG
CTTGCAGCTCTTGAACTGGCGGACTCTCCAAGGAGCGGGCTCGACGGACG
TGGAGGATACTCGGGATCTGACCAAGAAATGGCGCGAAGAGATCGACGAA
GGCACGTCGCCCATGACCACCTGGGCCGCCCCCCCCACTGTCCGCAAAGA
TAGTATCGGAGAGGCAACAGCCGAGGTAAATAGAGAAAACGGTGGGGGTA
GCGGACCTTTGGCAGAGGCCAAGGCAGCGATGGAGAAGGAGCAACGCGAG
GAGGAGCAGCAGCAAGGGGAAGGCATTGATGGGTTCTCCCCGCCCTCGAC
CCCGCGCGTGGAGGCGATTCCTGAGGACGCCAACAAGGGTATGAAGGTAG
ACATAGATGACATGGCCATGAAAAATAAGCTCAATCCGAATCAGGTCGTG
ATAGGAACGGCACCGCAGTATAAGTGGAAGGAAAGGGCGGGCTACATGGA
AGTGGTGGTACCAGTCCCCGAGGAGGTGAAGAAAGAAGATGTTTTAGTGC
ACCTGACCAATCGCGTCTTGACAGTGGGCTTCAAGACCCCGGAGAACAAG
GAAAGCTGGATAATTGGCGGTGACCTCTTCGGGCCCATCGAGCTGGACTC
CTCGTTTTGGGTGTTGAGCAAGGATTACACGGACGAGTTAACAGAGGGCA
AAACGTGCGTCGAAGTGAGGCTGGAGAAAAAAGAGCCCATGCGCAGGATA
TGGAGCACAGTATTCAAAGACCAATGA

protein sequence of rna4518

>rna4518-protein ID=rna4518-protein|Name=rna4518|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MFHHHDHRSMTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFH
HHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATP
AEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDRR
RQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFA
TPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEE
MTAKAKDARAQVKEAAGFVSEAVDREGAIQARLEAVEAASESSAAAMQGL
REESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTAD
VEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVQERLSQTSL
DLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRR
REMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATS
AAAASEAGQDLGRRTGPETGVGKEVSGEARMRRQREAFDLVFGSIRKRSR
GPTQGKKTDTAVEEGVGPGSNDDPATSGDWDSSEEPGEPLEEASSVQAPA
ASTAAAPRAEPEKPVEGGGAQEMERDPAQQELQGVGR

mRNA from alignment at CM002463.1:816523..819414+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4518 ID=rna4518|Name=rna4518|organism=Nannochloropsis gaditana|type=mRNA|length=2892bp|location=Sequence derived from alignment at CM002463.1:816523..819414+ (Nannochloropsis gaditana)
CTCACAGAGCACCACGCTCGGTGGCGGCATTGTATCAGTTCTGGCGCTTG
TCACGGACGCTCGTGGCGGGCATAACTGGTACGTTCTTCTAATACGAGGA
AAGATCGTATTCGAGTCCGCCTGCATAACCGCTTTTAAAAGCTGCTTCGA
CGTAATTGACCTGAAagccccccttgcccgcacGGCTTGATCATCGTTGC
AATGCAGAGAAGCATCTGAGTGTGAAGCTAGGTGCTTGTCTTCTGCCGCA
ATATGCCGCTGGtctgctccccttcccatACCATCGACGCAAGCCCCGGT
GGTCGGGCCGTAGAGCAattcttcctcgctttcaCATGTTTCATCATCAC
GACCACAGATCAATGACCGGCACCACCACGTCTGACGTTTCGCATTGGCC
GACTCGCCCAGCCGTtgtgcccttcttcctttctttcctcctcgccgtct
tctccctactcccctccgtcctggatgccttccaccaccacccctctccc
ccctcccatgtcCCAGTTTCAACCGTCAGTCCGAGCCAAGGATGCAAACC
ACACACCACCCGCTTTATCTCTCGTCTCTCCGCCAGCAAGACAGACTACT
ATTCTGTGCTCGGCCTCTCCCCgggggccacgcccgccgagGTCAAGCGC
GCCTTCCGGGAGCGGGCCAAGACTACCCATCCGGACTCAAGCCGCAGCGC
GGACACCACGCAAGAATTTTTGGCCATCAAGGAGGCTTACGAAACGCTGT
ACGATGCCCGCCGACGCGCAGAGTTCGACCGGCGGCGGCAGTTGGCTGAA
GTGGCCGACTTGGCTGTGAGCGTCGGCGAGATCTTGACCCGCGACGTGGC
GGTCCCACTGGGTAAGgagtggagaggaaggcgctgGTCGTCAAGAGAGT
CGCCCTCGTGATGCCCTGCACACTCCCATCTCACGCTTGACGAAActctt
ccccctcatccAGCCCGGGAcgttgccctcccccttatCAAAACCGCCTT
CGAGGGACTCGACCAGACCGTGATCAAGCAGTTCGCCACCCCGATCCTCA
AACGCACGCTCCAGCAGTCAGCGGCCGCTGTGGAGGCCGTGCGGCAGGTG
GCGCAAGACCGGGCGCAGTACTTCACGCAGGTGCAAGCCTCGTGGCGCGC
GGAGGAGATCCGATCTTTGACGCAGCAGCTGGAAGAGATGacggccaagg
cgaaggaCGCGCGCGCGCAGGTCAAGGAGGCAGCCGGCTTCGTCTCGGAG
GCAGTAGACCGGGAAGGGGCCATCCAGGCCCggttggaggcggtggaggc
cgcgAGTGAGTCCTCGGCGGCTGCCATGCAAGGgttgcgggaggagagca
ggcggGCCCTATCCGATTTCCAGGAGAgggtggcagaggaagcagagCGT
CGACAAGCGGCACGCAGGCTGAAGACGGAAGAAACGCGGGTGCTGGCCGC
CAACAAGCGCTTGGAGGCCTTCGCCCTGACCGCagacgtggaggtggcgg
aggcggaggaggtcctGCGCCGGGCCCAAACGCGGATGGAGAAGGCCAGG
CAAGCGCGGGAAAGGGCGCAGGGCTTGTTGAAGACGAgtcaagaggaggc
ggacggcgtGCAAGAACGGCTCTCACAGACCAGCCTGGACCTTCAGGAGG
CTTTGGCCGCGGTGGCCCCATCGCGGAGGGTCTGGCAGGAAGCTCAGGCG
CGCGAGGCGTCGTTGCTCGCTCAATTGAAAAgccagagcaaggaggaggc
ggccctgCGACAGGAACTGGCCATGGCCGTCCGAAGACGCGAGATGGCGC
GCCGGGAATTCCTGGCGGCCGAGCGGCGTACGGGCTTGTTCCAGAAGGGC
GTGATGGAGCTTGCCGGACAGATAGAGCGCAAGTACAACGAGGCTCTGGC
CGGCTCCGGGATAACGAGCACGTCGGGCGCTACGTCCGCCGCGGCAGCGT
CGGAAGCAGGGCAGgacctgggaaggaggacggggccaGAGACAGGAGTC
GGAAAAGAAGTGTCGGGAGAGGCGCGCATGCGGCGGCAACGCGAGGCGTT
TGACCTCGTCTTTGGGAGCATACGGAAGCGGTCGCGGGGCCCGACAcagg
ggaaaaagacagacacagcggtggaggagggcgtgggcccGGGCAGCAAC
GACGATCCAGCGACGTCTGGAGATTGGGACTCCTCCGAGGAACCAGGAGA
GCcactggaggaggcgtcaaGCGTGCAAGCACCTGCTGCGTCGACGGCTG
CGGCCCCCCGGGCGGAGCCCGAAAAGCCAgtagaggggggaggggctcaG
GAAATGGAACGTGATCCCGCCCAGCAGGAGCTGCAGGGCGTGGGAAGATG
ACATCGGTTGCGTCAAGTCCTCGGAACTCGCGGCGGGTGTGAAGGTTAGG
GAACTTGAGAGTGTGAGAGTGGTCAGCTTACTGGGTATGGGGCGTTCTCA
GAGGCTTTTGGGCTCCAGTGCCAGATAAGCGAGCAGTCCAGGTCAAAAAC
GACGAGCAAGATCTTTGTTGTGGGTGCGTTCGTGTATGTAGATTGTGTAC
TGAATAGATGTAGCCCCTCGCCGTACCGTGTGGGCGCTCTTAGGCTTCCA
GGACGGAAGAACTTTGCTAGAAgagcagaaaggagggaaagaagggaaaa
acgGCGTGCCGCGGGTAGAAGCTTTGTATGAGGGCTTTGCGGTGCATGCG
TGGAAATGGTAACAACGAGGGAGACGCGGTCCGCTTGTTGAATTGGGAAT
TCTCCACtctcaaggagggggggggcggaggagtaGGGTGTAGGCAGGCA
AGTAACAACGAGAAAGGTGAGATGGCCAACCTGGTCTCTTCCCCACCGTC
GCACATCACATAGTGAATCAAGGCATAGATAAATTTTGGAGG

Coding sequence (CDS) from alignment at CM002463.1:816523..819414+

>rna4518 ID=rna4518|Name=rna4518|organism=Nannochloropsis gaditana|type=CDS|length=3828bp|location=Sequence derived from alignment at CM002463.1:816523..819414+ (Nannochloropsis gaditana)
ATGTTTCATCATCACGACCACAGATCAATGACCGGCACCACCACGTCTGA
CGTTTCGCATTGGCCGACTCGCCCAGCCGTtgtgcccttcttcctttctt
tcctcctcgccgtcttctccctactcccctccgtcctggatgccttccac
caccacccctctcccccctcccatgtcCCAGTTTCAACCGTCAGTCCGAG
CCAAGGATGCAAACCACACACCACCCGCTTTATCTCTCGTCTCTCCGCCA
GCAAGACAGACTACTATTCTGTGCTCGGCCTCTCCCCgggggccacgccc
gccgagGTCAAGCGCGCCTTCCGGGAGCGGGCCAAGACTACCCATCCGGA
CTCAAGCCGCAGCGCGGACACCACGCAAGAATTTTTGGCCATCAAGGAGG
CTTACGAAACGCTGTACGATGCCCGCCGACGCGCAGAGTTCGACCGGCGG
CGGCAGTTGGCTGAAGTGGCCGACTTGGCTGTGAGCGTCGGCGAGATCTT
GACCCGCGACGTGGCGGTCCCACTGGCCCGGGAcgttgccctccccctta
tCAAAACCGCCTTCGAGGGACTCGACCAGACCGTGATCAAGCAGTTCGCC
ACCCCGATCCTCAAACGCACGCTCCAGCAGTCAGCGGCCGCTGTGGAGGC
CGTGCGGCAGGTGGCGCAAGACCGGGCGCAGTACTTCACGCAGGTGCAAG
CCTCGTGGCGCGCGGAGGAGATCCGATCTTTGACGCAGCAGCTGGAAGAG
ATGacggccaaggcgaaggaCGCGCGCGCGCAGGTCAAGGAGGCAGCCGG
CTTCGTCTCGGAGGCAGTAGACCGGGAAGGGGCCATCCAGGCCCggttgg
aggcggtggaggccgcgAGTGAGTCCTCGGCGGCTGCCATGCAAGGgttg
cgggaggagagcaggcggGCCCTATCCGATTTCCAGGAGAgggtggcaga
ggaagcagagCGTCGACAAGCGGCACGCAGGCTGAAGACGGAAGAAACGC
GGGTGCTGGCCGCCAACAAGCGCTTGGAGGCCTTCGCCCTGACCGCagac
gtggaggtggcggaggcggaggaggtcctGCGCCGGGCCCAAACGCGGAT
GGAGAAGGCCAGGCAAGCGCGGGAAAGGGCGCAGGGCTTGTTGAAGACGA
gtcaagaggaggcggacggcgtGCAAGAACGGCTCTCACAGACCAGCCTG
GACCTTCAGGAGGCTTTGGCCGCGGTGGCCCCATCGCGGAGGGTCTGGCA
GGAAGCTCAGGCGCGCGAGGCGTCGTTGCTCGCTCAATTGAAAAgccaga
gcaaggaggaggcggccctgCGACAGGAACTGGCCATGGCCGTCCGAAGA
CGCGAGATGGCGCGCCGGGAATTCCTGGCGGCCGAGCGGCGTACGGGCTT
GTTCCAGAAGGGCGTGATGGAGCTTGCCGGACAGATAGAGCGCAAGTACA
ACGAGGCTCTGGCCGGCTCCGGGATAACGAGCACGTCGGGCGCTACGTCC
GCCGCGGCAGCGTCGGAAGCAGGGCAGgacctgggaaggaggacggggcc
aGAGACAGGAGTCGGAAAAGAAGTGTCGGGAGAGGCGCGCATGCGGCGGC
AACGCGAGGCGTTTGACCTCGTCTTTGGGAGCATACGGAAGCGGTCGCGG
GGCCCGACAcaggggaaaaagacagacacagcggtggaggagggcgtggg
cccGGGCAGCAACGACGATCCAGCGACGTCTGGAGATTGGGACTCCTCCG
AGGAACCAGGAGAGCcactggaggaggcgtcaaGCGTGCAAGCACCTGCT
GCGTCGACGGCTGCGGCCCCCCGGGCGGAGCCCGAAAAGCCAgtagaggg
gggaggggctcaGGAAATGGAACGTGATCCCGCCCAGCAGGAGCTGCAGG
GCGTGGGAAGATGAATGTTTCATCATCACGACCACAGATCAATGACCGGC
ACCACCACGTCTGACGTTTCGCATTGGCCGACTCGCCCAGCCGTtgtgcc
cttcttcctttctttcctcctcgccgtcttctccctactcccctccgtcc
tggatgccttccaccaccacccctctcccccctcccatgtcCCAGTTTCA
ACCGTCAGTCCGAGCCAAGGATGCAAACCACACACCACCCGCTTTATCTC
TCGTCTCTCCGCCAGCAAGACAGACTACTATTCTGTGCTCGGCCTCTCCC
CgggggccacgcccgccgagGTCAAGCGCGCCTTCCGGGAGCGGGCCAAG
ACTACCCATCCGGACTCAAGCCGCAGCGCGGACACCACGCAAGAATTTTT
GGCCATCAAGGAGGCTTACGAAACGCTGTACGATGCCCGCCGACGCGCAG
AGTTCGACCGGCGGCGGCAGTTGGCTGAAGTGGCCGACTTGGCTGTGAGC
GTCGGCGAGATCTTGACCCGCGACGTGGCGGTCCCACTGGCCCGGGAcgt
tgccctcccccttatCAAAACCGCCTTCGAGGGACTCGACCAGACCGTGA
TCAAGCAGTTCGCCACCCCGATCCTCAAACGCACGCTCCAGCAGTCAGCG
GCCGCTGTGGAGGCCGTGCGGCAGGTGGCGCAAGACCGGGCGCAGTACTT
CACGCAGGTGCAAGCCTCGTGGCGCGCGGAGGAGATCCGATCTTTGACGC
AGCAGCTGGAAGAGATGacggccaaggcgaaggaCGCGCGCGCGCAGGTC
AAGGAGGCAGCCGGCTTCGTCTCGGAGGCAGTAGACCGGGAAGGGGCCAT
CCAGGCCCggttggaggcggtggaggccgcgAGTGAGTCCTCGGCGGCTG
CCATGCAAGGgttgcgggaggagagcaggcggGCCCTATCCGATTTCCAG
GAGAgggtggcagaggaagcagagCGTCGACAAGCGGCACGCAGGCTGAA
GACGGAAGAAACGCGGGTGCTGGCCGCCAACAAGCGCTTGGAGGCCTTCG
CCCTGACCGCagacgtggaggtggcggaggcggaggaggtcctGCGCCGG
GCCCAAACGCGGATGGAGAAGGCCAGGCAAGCGCGGGAAAGGGCGCAGGG
CTTGTTGAAGACGAgtcaagaggaggcggacggcgtGCAAGAACGGCTCT
CACAGACCAGCCTGGACCTTCAGGAGGCTTTGGCCGCGGTGGCCCCATCG
CGGAGGGTCTGGCAGGAAGCTCAGGCGCGCGAGGCGTCGTTGCTCGCTCA
ATTGAAAAgccagagcaaggaggaggcggccctgCGACAGGAACTGGCCA
TGGCCGTCCGAAGACGCGAGATGGCGCGCCGGGAATTCCTGGCGGCCGAG
CGGCGTACGGGCTTGTTCCAGAAGGGCGTGATGGAGCTTGCCGGACAGAT
AGAGCGCAAGTACAACGAGGCTCTGGCCGGCTCCGGGATAACGAGCACGT
CGGGCGCTACGTCCGCCGCGGCAGCGTCGGAAGCAGGGCAGgacctggga
aggaggacggggccaGAGACAGGAGTCGGAAAAGAAGTGTCGGGAGAGGC
GCGCATGCGGCGGCAACGCGAGGCGTTTGACCTCGTCTTTGGGAGCATAC
GGAAGCGGTCGCGGGGCCCGACAcaggggaaaaagacagacacagcggtg
gaggagggcgtgggcccGGGCAGCAACGACGATCCAGCGACGTCTGGAGA
TTGGGACTCCTCCGAGGAACCAGGAGAGCcactggaggaggcgtcaaGCG
TGCAAGCACCTGCTGCGTCGACGGCTGCGGCCCCCCGGGCGGAGCCCGAA
AAGCCAgtagaggggggaggggctcaGGAAATGGAACGTGATCCCGCCCA
GCAGGAGCTGCAGGGCGTGGGAAGATGA

Synonyms

Publications