EWM26163.1, cds4507 (CDS) Nannochloropsis gaditana

Overview
NameEWM26163.1
Unique Namecds4507
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:816858..817383 +
Alignment locationCM002463.1:817486..818873 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26163.1
Productchaperone protein dnaj
Orig transcript idgnl|cribi|Naga_100121g10.10135.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:816858..817383 +
CM002463.1supercontigCM002463.1:817486..818873 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Homology
BLAST of EWM26163.1 vs. NCBI_GenBank
Match: gi|585108159|gb|EWM26163.1| (chaperone protein dnaj [Nannochloropsis gaditana])

HSP 1 Score: 1264.98 bits (3272), Expect = 0.000e+0
Identity = 637/637 (100.00%), Postives = 637/637 (100.00%), Query Frame = 0
Query:    1 MFHHHDHRSMTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFHHHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGFVSEAVDREGAIQARLEAVEAASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADVEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVQERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEARMRRQREAFDLVFGSIRKRSRGPTQGKKTDTAVEEGVGPGSNDDPATSGDWDSSEEPGEPLEEASSVQAPAASTAAAPRAEPEKPVEGGGAQEMERDPAQQELQGVGR 637
            MFHHHDHRSMTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFHHHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGFVSEAVDREGAIQARLEAVEAASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADVEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVQERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEARMRRQREAFDLVFGSIRKRSRGPTQGKKTDTAVEEGVGPGSNDDPATSGDWDSSEEPGEPLEEASSVQAPAASTAAAPRAEPEKPVEGGGAQEMERDPAQQELQGVGR
Sbjct:    1 MFHHHDHRSMTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFHHHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGFVSEAVDREGAIQARLEAVEAASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADVEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVQERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEARMRRQREAFDLVFGSIRKRSRGPTQGKKTDTAVEEGVGPGSNDDPATSGDWDSSEEPGEPLEEASSVQAPAASTAAAPRAEPEKPVEGGGAQEMERDPAQQELQGVGR 637          
BLAST of EWM26163.1 vs. NCBI_GenBank
Match: gi|553180297|ref|XP_005853382.1| (chaperone protein [Nannochloropsis gaditana CCMP526] >gi|422295680|gb|EKU22979.1| chaperone protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1221.45 bits (3159), Expect = 0.000e+0
Identity = 619/628 (98.57%), Postives = 622/628 (99.04%), Query Frame = 0
Query:   10 MTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFHHHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGFVSEAVDREGAIQARLEAVEAASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADVEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVQERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEARMRRQREAFDLVFGSIRKRSRGPTQGKKTDTAVEEGVGPGSNDDPATSGDWDSSEEPGEPLEEASSVQAPAASTAAAPRAEPEKPVEGGGAQEMERDPAQQELQGVGR 637
            MTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFHHHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQ+FLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAG VSEAVDREGAIQARLEAVE ASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTAD EVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGV+ERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEAR RRQREAFDLVFGSIRKRSRGPT+GKKTDTAVEEGVGPGS DDPATSGDWDSSEEPGEPLEEASSVQAPAASTAAAPRAEPE PVEGGGAQEMERDPAQQELQGVGR
Sbjct:    1 MTGTTTSDVSHWPTRPAVVPFFLSFLLAVFSLLPSVLDAFHHHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQDFLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGLVSEAVDREGAIQARLEAVEGASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADAEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVRERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEARKRRQREAFDLVFGSIRKRSRGPTRGKKTDTAVEEGVGPGSKDDPATSGDWDSSEEPGEPLEEASSVQAPAASTAAAPRAEPENPVEGGGAQEMERDPAQQELQGVGR 628          
BLAST of EWM26163.1 vs. NCBI_GenBank
Match: gi|1020706930|gb|KZM26911.1| (hypothetical protein ST47_g1944 [Ascochyta rabiei])

HSP 1 Score: 67.781 bits (164), Expect = 1.959e-8
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0
Query:   87 DYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDR 149
            DYY VLG++P ATP  + RA+++ A   HPD + + D TQ F  +  AYETL D  +R E+DR
Sbjct:    3 DYYMVLGVAPSATPELITRAYKQLALKLHPDRNTNQDATQAFQLLSRAYETLRDEIKRREYDR 65          
BLAST of EWM26163.1 vs. NCBI_GenBank
Match: gi|299469678|emb|CBN76532.1| (Heat shock protein 40 like protein/ DnaJ domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 67.3958 bits (163), Expect = 5.258e-8
Identity = 105/386 (27.20%), Postives = 163/386 (42.23%), Query Frame = 0
Query:   83 ASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFD------------RRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGFVSEAVDREGAIQARLEAVEAASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADVEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVQERLSQTSLDLQEALAAVAPSRRVWQEAQAREASL--LAQLKSQSKEEAALRQELAMAVRRREMA 454
            A + DYY+ LGL  GATP E+K A+R+ A   HPD+    +    F +   AYE L D  +++ +D            +  +   V     S+G   T  V V      A PL K    GL++        PI ++    + A +EA R+    R  +        RAEE  +   +LEE        + Q++E   +    V+R      R+E   A++  S  + + + +E+    SD   R A E    + ARR +      L A+   E    TA+  V  AE  L  A   ++ AR        +L  + EEA  ++    Q        +A  A +  V++E  A+EA+L   A L  Q  + AAL++E   + RR E A
Sbjct:  133 ADEVDYYAALGLKVGATPTEIKNAYRKIAMRVHPDTKDGINNRDIFESTTAAYEVLSDPGKKSTYDQGLAMRSFVDKVKAGKWGNVMSAVASLGAAAT-SVGVSAGVAAAEPLAKDLARGLEELTGSVEVDPITRKQQVANRAKLEAERK----RGAFER------RAEEFSTEASKLEETM------KTQLEEQKEWNKALVER------RIEV--ASARKSLESTESITKEAAEVASD---RKASELAAAEKARRSRAAREEFLQASANSEKKVSTAEATVTAAERRLWEALKTLDTARH-------MLALTYEEATALEGTRDQV-------MADTASAEGVFEE--AKEATLESKAALSQQRTDLAALQREFRESSRREEQA 474          
BLAST of EWM26163.1 vs. NCBI_GenBank
Match: gi|242036347|ref|XP_002465568.1| (chaperone protein dnaJ 11, chloroplastic [Sorghum bicolor] >gi|241919422|gb|EER92566.1| hypothetical protein SORBI_3001G438700 [Sorghum bicolor])

HSP 1 Score: 61.2326 bits (147), Expect = 2.343e-7
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0
Query:   86 TDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQEFLAIKEAYETLYDARRRAEFDRRRQLA 154
            + +Y VLGL PGA+  E+K A+R  A   HPD++ +A + ++F+ +  AY TL D  +RA++DRR  L+
Sbjct:   60 SSFYDVLGLRPGASAREIKAAYRRLALAVHPDAAAAASSAEDFIRVHAAYSTLSDPDKRADYDRRLLLS 128          
The following BLAST results are available for this feature:
BLAST of EWM26163.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585108159|gb|EWM26163.1|0.000e+0100.00chaperone protein dnaj [Nannochloropsis gaditana][more]
gi|553180297|ref|XP_005853382.1|0.000e+098.57chaperone protein [Nannochloropsis gaditana CCMP52... [more]
gi|1020706930|gb|KZM26911.1|1.959e-847.62hypothetical protein ST47_g1944 [Ascochyta rabiei][more]
gi|299469678|emb|CBN76532.1|5.258e-827.20Heat shock protein 40 like protein/ DnaJ domain co... [more]
gi|242036347|ref|XP_002465568.1|2.343e-742.03chaperone protein dnaJ 11, chloroplastic [Sorghum ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4518rna4518Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications