|
|
Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF4336 |
| Orig transcript id | gnl|cribi|Naga_100121g3.10137.mrna |
| Orig protein id | gnl|cribi|Naga_100121g3.10137 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:785280..786862 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4511 ID=rna4511|Name=rna4511|organism=Nannochloropsis gaditana|type=mRNA|length=3263bp
TCAGATGATAGGGTGAAAACAGCGTCGGAAACCCCGAAGGGGTATATTTA
TTATGCCTTGTGACGGAAGGAGCAAGACAGAAAAAAGGGAACAAGAAGAG
GACGATGAAGTGGAGATCATTGAGGTCCTTACAGTACGCTCAAAACGGGT
GAAGTCGAGCACGCTCTACGGCTACGGCTTTGGCAGCAGCACCCTCAACA
GTCTCCATCCTACCAAGACTCTGCCCTCCTTGCCTCCCCTACCTCCAGTG
CCAGCATGGGGGAGACTCATAGACGAGCAGAGCACAGCAAAGGTGGCATT
GCAGCGCTTTCTGGGCTTTTCGCCACCTCTGTTACGACATGCATACACAG
CGTGCTATCGAGGGGTATTCAATGACCGCTTTAATGCCGTGCCGGGGATG
GGTATCGCGTCAATTTTTGGACGCTATGGCTCCGGCGTCCGTAGCATTTT
GAATGTTTCAGGTTGTTCAACTTTTTCTAGTCGAAGTGTTGAACATGCCG
AAGGCCTTGTTAGAGATCAAGGTAGGAGCGACGGGCAGGCAATCTTAAAC
CCCGAGGTGATCCAGGACGTGGAGGGAGAGGAGGACGACGATGTCTCCTC
TCTGCCGAATGGGAATGCTCAAGGCGCCAAATTTTGGAATAAATCTCACC
GAAATTTCAATTTTATTTTGAACTGGGCTTTGGAATGTTCTGAGGTATTG
AAAAGCTGTCGGCAAGACGTGCAGGACTTGCAAAAATTGCGTGTCGGCCT
CTCTCCCGAAGCGGCGACTTTGCTCTGGCAATGCTTTCACAGCCCAAGGG
CCATTTGCCGGGTCCACGTGCAACGCGAAGGAAAGAAAACGATTGTGAAG
GGAAAGAGTAGCGACCGGAACGACAACGGCGCTCTCCAAGAGCTTGTGAA
GCAGCAGGTTGTGAGAGACGTAACGGGGGACCAAGGCGCCTTGTTGATGC
ACCTCTACGACGTTTTCGCCGCCTTGAGAGCCGATGAACTGGCGCGAATG
ACTCTGTGCTTGTTCGGTTCCGCGGCTGCTGCCACGTCTGCCGTGTCCTC
GAGCCTCCCTTGCTCTTGGAGGGGCCGTCGAAACGCGAGTCGGGAGGCCT
CCTTGAAGAGCTTGAGCACGTTCCTGGAAAGGTGTCAGAAAGAAGGAAGC
CCGGAGAGAGTGCGGCGAAAGCTCGGGCACGACTTGGTCAAGTGGCTGGC
GAAGGAGACGCAGGCGCCGCTGCAGGTGAAAGGAGAGCAGCAGCAGCAGC
AGTCCTTCCGACTGGTTTGTCTCGCCCCCCGCCTTGCTAAGTTGCTGCAG
CGGCTATTCGCCCTCTTTTTCATGACGAATGGGTACGACGCAGAGGACGC
CGTGGTTCTCTGGTGGAACGACTTGGAGACATTACGATTCGCCAGCAGAG
GTGACGTGGACGGCGCGGGTCAGGGCAGGAGTGGGGAAGGACTGCTGCCT
TTCGCTTCCCGAGGACCCTCCACGTCCACCAAGTCGAGCGCAGACGACGA
GAACCAAGAGGCGGAGGCGACCATCCAAAAGGCTGAGCGTCCACCTCGCT
CGGAGCTGCCTGTGGCTTGGCCGGGGCTGGGCAGCCCCGAGATCCCGTGC
GCCTACAGACAATTTGCGGACACGACCCTTTCCCTGTCGGATGCCTTCGA
AGCGGCTGTGGCCTCTGGGGACTCGGCGACTGCCTACGCCTGCTTGCACA
CGGTGTCCGACCTCTTCCTTCCCCGGCCGATGCTCCCGGCCCACGCATCC
GGGTCGGTCGTCTCGGACCCAGCTTGCACGTCGCTGGCGGCGCTGGAAGT
CACCCAGGTCAAAACCGGAACGCACCGGTTCCAGCTGGATGTGCCCGCGG
AGTACCGAGGGCTGGAGGAGCTGCCAGGTATCCTCTTTAAGGTGTTGGCC
CGGGTCATTGGCCGGGGGATCGGGCTCCTGGAGCGCGACCGGAAGCACGC
CCAGGCGGTCCACTACCTGAAGATCATCTTGGATGGGAGCGAGCCATTGC
CATGGTCCCTCCGCGGCCATTTTCATTCACGGCTGGTCCTGGACCTGGTG
CACTGCAATCGGCCGGGGGAGGCCTTGGCAGCCTGCGAACACGCCCTCGC
CGACCCTCGCGTGGACGGAGAAGATCGTCTCTTCCTCCAGGCCAAGTGCC
TGTCCTTGGCCGTAGCCCCCAGGCGCTGGAAGAAGCCCACCTTTCCTGCA
TTACAAACGGCGCCTGTGCTCGAGTTGAAGATGGCTGAAGTGCAGGGGTG
GCGGCAGAAGGGGAAGAGTCTGGAGGACAGCGTGCTTGCGTGCTTGCTGC
AGAGGGAAGGCGATGGGATGGCTGGGCGGGAGGGGTGTTTCCCGGGCGTA
CGCGAGGAAGACCCCCAGCAGGCCGGGCATTGGCGGGGGGCGCACTGGGA
GAACGGGCTCATGCTTAGCCTCTTTGGAATCCTGTGCTGGGACGTGCTGT
GGTCGGCGCAACCGGCCCACTCGGAGAAGGAGAGCATCCTCGCGACGTCC
TCCCAGGGTGCCAACGGCGGCAGACCTGACTGTCGCACAAGGAGCAGTCG
TGGTACACGCAGCACCCAAAGCTGTCGGTACCAACATGCCCCTTGTGACT
TGCAGCATAATCGAGGCTTCCTGAAGTCATGTCCTGGGAGAGTTAGCGCC
TTGGAGCAGGTGCTAGCCCGTATTCAACGGGGGGAATCGGGGGCCCTGCT
GGCGGAGAACCACGCCCGCTATCACGGCACTCTCTGTCTGGGGATCGATT
GGACGACGTTCTCCTTACCTGTGCTACAGACGGTGGCGGAGGCCCTCGGG
TCATCGGCATTGATGTTGCTCTGCGAGACCTTGATAAGAGATTACTCCTT
GCTCAGCCACGGCTTTCCGGATTTATTGCTCTGGCGGGATGCAGGTCCGC
ACGGAGGAATGCCAGCCATGGTCAGGCTCGTGGAAGTGAAAGGCCCTGGG
GACAGCCTGAGTTGGGCTCAGAAGTACTGGATCGACAAGCTGCTAGGGGT
GGGGGTTAGGGTGGAAGTGGCCAGGGTAGTGGAGGGTAATGAGAGGGGTC
TTCGACCGGGAGCACAAAGAAGGAAAGCGTAGGGGGAAAGGAAGGCAGGG
AATGCATGAAAAGACGCGTGCACTTTGTACATTAGACGGAGGTATGTTCG
GCGCTACCTTTGTGAAAAGCTGTAGATCGTACATAAAGCAAATTGTTATT
TACAGTCGTCTCATTGCTTCTTCTCTCCTTTTTCCCTGTTGCTCTTGCTT
TTAAGTAACCAAC back to topprotein sequence of rna4511 >rna4511-protein ID=rna4511-protein|Name=rna4511|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MPRTGLLLWPICTGAIVLVLLFVARASAFLHHQCHRRRLSRQCAALRART
PKMSSEIDETSTIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITT
TNIKTRMSVFKCETSIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAI
DHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQR
GNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVA
ATGWKLFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHL
DAIPAAAVGEEQTAEEVKRIFLQSFDFILR back to topmRNA from alignment at CM002463.1:785280..786862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4511 ID=rna4511|Name=rna4511|organism=Nannochloropsis gaditana|type=mRNA|length=1583bp|location=Sequence derived from alignment at CM002463.1:785280..786862- (Nannochloropsis gaditana)
ACAAAACTCGCGCTCAATCAAACTGGTTTTATATCTGTGCGCATGATAAC
GCACACAGGTGGATATAGATAACAAATGCCGAGAACTGGCCTGCTTTTAT
GGCCTATTTGTACAGGGGCAATTGTGCTCGTGCTCCTGTTCGTAGCCAGA
GCCTCTGCCTTCCTTCATCATCAGTGCCATCGACGCAGGCTTTCGCGTCA
ATGCGCGGCGCTGAGAGCCCGCACCCCCAAAATGTCAAGTGAAATCGATG
AGACTTCAACAATCCAAAGACAGAAGCTTTTCCTGCCATTTCCCCCTTCT
GTACGACCCACGTCCCTCGTTTTCAGTGATGCACAGCATAAGGTGTGGAC
GTTTGAGCAACCCTTCATCACAACAACCAACATTAAGACAAGGTAAGGAG
CGCCAGAATATGTTCTATATGCATTTTAAAATTTTTGTTGTATTGTACAC
CCGATGTCCATGTAACTTTTGGAGATGTGACGCATTGAACGTCTTATACA
CGCCTATAGGATGAGTGTCTTTAAATGCGAGACATCAATTGTCATGTATT
CGCCCATAGCCGCGACCCCCGAGTGTTGTGACATGGTCCGAAATATTGTC
GGTGGCATGCCCACTTACATAATCATGCAGGTATGGCAAATTTTGAAGGA
CGAGAGGTACACGTCATGACTTCATGAACTTGATTCATTTCCTATCCTCC
CTTCGCCCTTTAAATTGGTGTTTGCCGTAAAAGAGCAATGCAATAGACCA
CACAATTTTCTTAAATGGTTGGCGTCGAGCAGTGCCTTCCGCGCAAATTT
TGAACATTTCACCAAGAGAAGGAGACTTGCCGATGCTTAAAGATTCTTCT
TCAGGCGGGGAAACTGCGATAATTTTGCCTCTACCTTTTCAGCGGGGAAA
TCAGCCGATTGTTGAAGCAGCTTTGCTTGACATTGAACCTTTCTTCCGTG
AGATTGTACTATTTCACAAGCCCAGTAAGACCCTATTATGTGCAGATGCT
ATTTGGCGGGTGGTTTCTCCGACTTTCTCGCCCAACATAGTAGCAGCCAC
TGGATGGAAGTTGTTCGGAGTAAGCGGTGTGTCCCGGTTTCCATATTGGT
TTTATTTTCCGCGACGAAAGCGGGCGCAGGTGCAACAATTTGTGGATCAA
GTGCAGGCATGGGGCGAAATTGAGCGCTGTCTGCCCGGTCACTTGGATGC
CATTCCTGCGGCGGCCGTCGGTGAGGAGCAGACAGCTGAAGAGGTCAAGC
GCATTTTCTTACAATCATTTGACTTTATTTTAAGGTGAATGAATGGAGAT
GCACCAGAATATGAGAACCCTGTGCGATTTTTAAAAAAATAATTGAAAGA
GAAAAAAATGATTTTTGGAGTTGATGGTCGATTCCAAAGTTGCAAGAAGG
CGTTTCGTCAGGCATACTTTTTAAAGGTAAATGCCTAAAATCGATTTGTG
CATGCAGAAAATACTACACCGGATCATGGAATAAAGGGAGGAGGCAACGA
GCGACGCCAGCACTTGTCGCTCATCGCTTAAGCGTAGTTCTTCAGGTTAT
GGGCAAATGCCATAGAAACGTGATACTTATTCT back to topCoding sequence (CDS) from alignment at CM002463.1:785280..786862- >rna4511 ID=rna4511|Name=rna4511|organism=Nannochloropsis gaditana|type=CDS|length=2979bp|location=Sequence derived from alignment at CM002463.1:785280..786862- (Nannochloropsis gaditana)
AGCAATGCAATAGACCACACAATTTTCTTAAATGGTTGGCGTCGAGCAGT
GCCTTCCGCGCAAATTTTGAACATTTCACCAAGAGAAGGAGACTTGCCGA
TGCTTAAAGATTCTTCTTCAGGCGGGGAAACTGCGATAATTTTGCCTCTA
CCTTTTCAGCGGGGAAATCAGCCGATTGTTGAAGCAGCTTTGCTTGACAT
TGAACCTTTCTTCCGTGAGATTGTACTATTTCACAAGCCCAGTAAGACCC
TATTATGTGCAGATGCTATTTGGCGGGTGGTTTCTCCGACTTTCTCGCCC
AACATAGTAGCAGCCACTGGATGGAAGTTGTTCGGAGTAAGCGGTGTGTC
CCGGTTTCCATATTGGTTTTATTTTCCGCGACGAAAGCGGGCGCAGGTGC
AACAATTTGTGGATCAAGTGCAGGCATGGGGCGAAATTGAGCGCTGTCTG
CCCGGTCACTTGGATGCCATTCCTGCGGCGGCCGTCGGTGAGGAGCAGAC
AGCTGAAGAGGTCAAGCGCATTTTCTTACAATCATTTGACTTTATTTTAA
GGTGAGATGAGTGTCTTTAAATGCGAGACATCAATTGTCATGTATTCGCC
CATAGCCGCGACCCCCGAGTGTTGTGACATGGTCCGAAATATTGTCGGTG
GCATGCCCACTTACATAATCATGCAGATGCCGAGAACTGGCCTGCTTTTA
TGGCCTATTTGTACAGGGGCAATTGTGCTCGTGCTCCTGTTCGTAGCCAG
AGCCTCTGCCTTCCTTCATCATCAGTGCCATCGACGCAGGCTTTCGCGTC
AATGCGCGGCGCTGAGAGCCCGCACCCCCAAAATGTCAAGTGAAATCGAT
GAGACTTCAACAATCCAAAGACAGAAGCTTTTCCTGCCATTTCCCCCTTC
TGTACGACCCACGTCCCTCGTTTTCAGTGATGCACAGCATAAGGTGTGGA
CGTTTGAGCAACCCTTCATCACAACAACCAACATTAAGACAAGAGCAATG
CAATAGACCACACAATTTTCTTAAATGGTTGGCGTCGAGCAGTGCCTTCC
GCGCAAATTTTGAACATTTCACCAAGAGAAGGAGACTTGCCGATGCTTAA
AGATTCTTCTTCAGGCGGGGAAACTGCGATAATTTTGCCTCTACCTTTTC
AGCGGGGAAATCAGCCGATTGTTGAAGCAGCTTTGCTTGACATTGAACCT
TTCTTCCGTGAGATTGTACTATTTCACAAGCCCAGTAAGACCCTATTATG
TGCAGATGCTATTTGGCGGGTGGTTTCTCCGACTTTCTCGCCCAACATAG
TAGCAGCCACTGGATGGAAGTTGTTCGGAGTAAGCGGTGTGTCCCGGTTT
CCATATTGGTTTTATTTTCCGCGACGAAAGCGGGCGCAGGTGCAACAATT
TGTGGATCAAGTGCAGGCATGGGGCGAAATTGAGCGCTGTCTGCCCGGTC
ACTTGGATGCCATTCCTGCGGCGGCCGTCGGTGAGGAGCAGACAGCTGAA
GAGGTCAAGCGCATTTTCTTACAATCATTTGACTTTATTTTAAGGTGAGA
TGAGTGTCTTTAAATGCGAGACATCAATTGTCATGTATTCGCCCATAGCC
GCGACCCCCGAGTGTTGTGACATGGTCCGAAATATTGTCGGTGGCATGCC
CACTTACATAATCATGCAGATGCCGAGAACTGGCCTGCTTTTATGGCCTA
TTTGTACAGGGGCAATTGTGCTCGTGCTCCTGTTCGTAGCCAGAGCCTCT
GCCTTCCTTCATCATCAGTGCCATCGACGCAGGCTTTCGCGTCAATGCGC
GGCGCTGAGAGCCCGCACCCCCAAAATGTCAAGTGAAATCGATGAGACTT
CAACAATCCAAAGACAGAAGCTTTTCCTGCCATTTCCCCCTTCTGTACGA
CCCACGTCCCTCGTTTTCAGTGATGCACAGCATAAGGTGTGGACGTTTGA
GCAACCCTTCATCACAACAACCAACATTAAGACAAGAGCAATGCAATAGA
CCACACAATTTTCTTAAATGGTTGGCGTCGAGCAGTGCCTTCCGCGCAAA
TTTTGAACATTTCACCAAGAGAAGGAGACTTGCCGATGCTTAAAGATTCT
TCTTCAGGCGGGGAAACTGCGATAATTTTGCCTCTACCTTTTCAGCGGGG
AAATCAGCCGATTGTTGAAGCAGCTTTGCTTGACATTGAACCTTTCTTCC
GTGAGATTGTACTATTTCACAAGCCCAGTAAGACCCTATTATGTGCAGAT
GCTATTTGGCGGGTGGTTTCTCCGACTTTCTCGCCCAACATAGTAGCAGC
CACTGGATGGAAGTTGTTCGGAGTAAGCGGTGTGTCCCGGTTTCCATATT
GGTTTTATTTTCCGCGACGAAAGCGGGCGCAGGTGCAACAATTTGTGGAT
CAAGTGCAGGCATGGGGCGAAATTGAGCGCTGTCTGCCCGGTCACTTGGA
TGCCATTCCTGCGGCGGCCGTCGGTGAGGAGCAGACAGCTGAAGAGGTCA
AGCGCATTTTCTTACAATCATTTGACTTTATTTTAAGGTGAGATGAGTGT
CTTTAAATGCGAGACATCAATTGTCATGTATTCGCCCATAGCCGCGACCC
CCGAGTGTTGTGACATGGTCCGAAATATTGTCGGTGGCATGCCCACTTAC
ATAATCATGCAGATGCCGAGAACTGGCCTGCTTTTATGGCCTATTTGTAC
AGGGGCAATTGTGCTCGTGCTCCTGTTCGTAGCCAGAGCCTCTGCCTTCC
TTCATCATCAGTGCCATCGACGCAGGCTTTCGCGTCAATGCGCGGCGCTG
AGAGCCCGCACCCCCAAAATGTCAAGTGAAATCGATGAGACTTCAACAAT
CCAAAGACAGAAGCTTTTCCTGCCATTTCCCCCTTCTGTACGACCCACGT
CCCTCGTTTTCAGTGATGCACAGCATAAGGTGTGGACGTTTGAGCAACCC
TTCATCACAACAACCAACATTAAGACAAG back to top
|