EWM26165.1, cds4500 (CDS) Nannochloropsis gaditana

Overview
NameEWM26165.1
Unique Namecds4500
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:786471..786787 -
Alignment locationCM002463.1:786233..786353 -
Alignment locationCM002463.1:785575..786129 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26165.1
ProductProtein of unknown function DUF4336
Orig transcript idgnl|cribi|Naga_100121g3.10137.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:786471..786787 -
CM002463.1supercontigCM002463.1:786233..786353 -
CM002463.1supercontigCM002463.1:785575..786129 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025638DUF4336
Homology
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|585108161|gb|EWM26165.1| (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MPRTGLLLWPICTGAIVLVLLFVARASAFLHHQCHRRRLSRQCAALRARTPKMSSEIDETSTIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITTTNIKTRMSVFKCETSIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWKLFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEEVKRIFLQSFDFILR 330
            MPRTGLLLWPICTGAIVLVLLFVARASAFLHHQCHRRRLSRQCAALRARTPKMSSEIDETSTIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITTTNIKTRMSVFKCETSIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWKLFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEEVKRIFLQSFDFILR
Sbjct:    1 MPRTGLLLWPICTGAIVLVLLFVARASAFLHHQCHRRRLSRQCAALRARTPKMSSEIDETSTIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITTTNIKTRMSVFKCETSIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWKLFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEEVKRIFLQSFDFILR 330          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|585113160|gb|EWM30496.1| (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 103.219 bits (256), Expect = 2.987e-21
Identity = 76/270 (28.15%), Postives = 138/270 (51.11%), Query Frame = 0
Query:   65 RQKLFLP--FPPSVRPTSLVFSDAQHKVWTFEQPFI-TTTNIKTRMSVFK-CETSIVMYSPIAATPECCDMVRNIVGG-----MPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWKLFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEEVKRIFLQSF 325
            R +++ P   PP  +PT+L+ SD +  +W FEQPF+    ++K RMSV +  +    +YSP+AATPEC DM++++V          + ++ S+  +H   L  WR   P A+++++ PR   +          +    LP P ++     ++ A+ +  P  RE+VL HKPSKTL  AD+ +  ++  +S ++      +L G+      P +F     K+ + ++  ++V+ WG  ++ +  H      AA+ EE   +E    FL+ +
Sbjct:  132 RDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKD----LDVAVYET-PLLREMVLTHKPSKTLFVADSGF-YINEEYSNSLTRGIT-QLQGIYDRFVTPPFFRLGMNKK-EGKRLYERVKDWG-FDKIVTCH------AALVEEGKGKEA---FLEGY 383          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|1035641792|gb|OAX83485.1| (hypothetical protein ACJ72_02155 [Emmonsia sp. CAC-2015a])

HSP 1 Score: 77.0258 bits (188), Expect = 1.668e-12
Identity = 84/287 (29.27%), Postives = 124/287 (43.21%), Query Frame = 0
Query:   67 KLFLPFPPSVRPTSLVFSDAQHKVWTFEQPF--ITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVE-----AALLDIEPFF----REIVLFHKPSKTLLCADAIWRV-VSPTFSPNIVAATGW---KLFGV--------SGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEEVKRIFLQSFDFIL 329
            KL  P P  V    +V    Q  + T   PF       I  R ++ + ++  +V++SP+A TP+  D V N +GG   YI+     ++H IFL  W+ A P+AQI  I+P        K+  + G   I     F   N+  ++      A  D+E F     REIVL HKPSK+L+ AD ++ +  +  FS +  +AT     KLF           G  RF  W+    + R    Q    +  W   +R +P H D I +            K IF   FD+ L
Sbjct:    4 KLVPPRPEDV----MVIRKVQSDIITLNVPFYRFGYAKIGGRCTIVRLQSGPLVVFSPVALTPDARDAV-NSLGGNVKYIVAPD--MEHHIFLTSWKEAYPNAQI--IAPEGLKEKREKNPETRG---ISFDYIFTAANRRTLKISDEFHADFDVEYFHSHPSREIVLLHKPSKSLIEADLLFNLPATEQFSRSGESATEGIISKLFSTFQSTKPPALGQKRF-IWYVLSAKDRKGFAQSAATIVGWN-FDRIIPCHGDVIESGG----------KEIFRNLFDWNL 266          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|821506959|gb|KKZ63705.1| (hypothetical protein EMCG_02012 [Emmonsia crescens UAMH 3008])

HSP 1 Score: 73.1738 bits (178), Expect = 3.379e-11
Identity = 75/258 (29.07%), Postives = 115/258 (44.57%), Query Frame = 0
Query:   67 KLFLPFPPSVRPTSLVFSDAQHKVWTFEQPF--ITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEA--ALLDIEPFF----REIVLFHKPSKTLLCADAIWRV-VSPTFSPNIVAATGWKLFGV-----------SGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAI 303
            KL  P P  V    +V    Q+ + T   PF       I  R ++ + +   +V++SP+A TP+  + V N +GG   YII     ++H IF+  W+ A P+AQI  I+P        K+  + G     +     + N  I +   A  D+E       REIVL HKPSKTL+ AD ++ +  +  FS +  +AT   L  V            G  RF  W+    + R    Q    ++ W + +R +P H D I
Sbjct:    4 KLVPPRPEDV----MVIRKVQNDIITLNVPFYRFGYARIGGRCTIVRLQNGPLVVFSPVALTPDAREAV-NSLGGNVKYIIAPD--LEHHIFVTPWKEAYPNAQI--IAPEGLKEKREKNPETRGVGYDHIFTAANKRNLKISDEFHANFDVEYVNSHPSREIVLLHKPSKTLIEADLLFNLPATEQFSKSGESATDGILTKVFSTFQSTQPPAMGQKRF-IWYVLSAKDRKGFAQSAAMIEGW-DFDRIIPCHGDVI 250          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|1103679780|gb|OJD16692.1| (hypothetical protein AJ78_03162 [Emergomyces pasteuriana Ep9510])

HSP 1 Score: 70.4774 bits (171), Expect = 2.638e-10
Identity = 70/261 (26.82%), Postives = 114/261 (43.68%), Query Frame = 0
Query:   67 KLFLPFPPSVRPTSLVFSDAQHKVWTFEQPF--ITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFF------REIVLFHKPSKTLLCADAIWRV-VSPTFSPNIVAATGW---KLFGVSGVSRFP-------YWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAA 307
            KL  P P  V    +V    Q  + T   PF       +  R ++ + ++  +V++SP+A TP+  D V N +GG   YII     ++H IFL  W+ A P+A+I  I+P        K+  + G     +     R +  I +    D +  +      REIVL HKPSK+L+ AD ++ +  +  FS +  +AT     K+F     ++ P        W+    + R    Q    ++ W    R +P H D I +  
Sbjct:    4 KLVPPHPEDV----MVVRKVQSDIVTLNVPFYRFGYAKVGGRCTIVRLQSGPLVVFSPVALTPDARDAV-NSLGGNVKYIIAPD--MEHHIFLTPWKEAYPNARI--IAPEGLKEKREKNPETRGVEIDHIFTAANRRSLKISDEFHADFDVEYVNSHPSREIVLLHKPSKSLIEADLLFNLPATEQFSKSRESATEGIVTKIFSTFQTTKPPAMGQKRLIWYVLSAKDRNGFAQSAATIEGWN-FNRIIPCHGDVIESGG 254          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|648395666|ref|WP_026087417.1| (hypothetical protein [Chlorogloeopsis fritschii])

HSP 1 Score: 70.8626 bits (172), Expect = 4.234e-10
Identity = 61/182 (33.52%), Postives = 88/182 (48.35%), Query Frame = 0
Query:   70 LPFPPSVRPTSLVFSDAQHKVWTFEQ-PFITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVG--GMPTYIIM-QSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPM-LKDSSSGGETAIILPLPFQRGNQPIV---EAALLDIE---PFFREIVLFHKPSKTLLCADAIWRV 239
            LP  P  +  +L     +  +WTFEQ   I  T    RM+V K ET  + +Y+P+A T EC  M+  +V   G   YII+  S+ ++H IF+  + R  P AQ+  ++P +   P  L  S  G        LP      P     E A+LDI+     F E+ + HK S+TLL  D+I  V
Sbjct:   30 LPLYPYGKRQTLCREIIEDTIWTFEQLQGILYTIAPIRMTVIKLETGGLFVYAPVAPTAECVRMINELVAEHGDIKYIILPTSSGLEHKIFVGPFARCFPQAQVF-VAPNQWSFPFNLPLSWLGFPQKRTQELPEDASLAPFANEFEYAVLDIDLGRGSFAEVAVLHKRSRTLLVTDSILSV 210          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|504984933|ref|WP_015172035.1| (DUF4336 domain-containing protein [Geitlerinema sp. PCC 7407] >gi|427985325|gb|AFY66469.1| hypothetical protein GEI7407_1988 [Geitlerinema sp. PCC 7407])

HSP 1 Score: 70.8626 bits (172), Expect = 4.884e-10
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 0
Query:   87 QHKVWTFEQ-PFITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVG--GMPTYIIMQS-NAIDHTIFLNGWRRAVPSAQILNISPREGDLPM-LKDSSSGGETAIILPLPFQRGNQPIVE----AAL----LDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWKLF 257
            +  +WTF+Q   I    +  RM+V + E   +++YSP+A TPEC  +V  +V   G   YII+ + + I+H +F+  + R  P+AQ+  I+P +   P+ L  S  G        LP   G  P  +    A L    L + P F E+  FH+ S+TLL  D++  VV P   P IV+   + L 
Sbjct:   53 KDTIWTFDQLQGILYVVVPIRMTVVRLEAGGLLVYSPVAPTPECIRLVEELVSRHGEVKYIILPTVSGIEHKVFVGPFARCFPAAQVF-IAPDQWSFPLNLPLSWLGLPARRTQVLPTDSGKAPFADEFDYAMLGPIDLGLGP-FEEVAFFHRRSRTLLVTDSV--VVIPERPPAIVSLDPYPLL 233          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|671156415|ref|XP_008716773.1| (hypothetical protein HMPREF1541_04205 [Cyphellophora europaea CBS 101466] >gi|568119657|gb|ETN42264.1| hypothetical protein HMPREF1541_04205 [Cyphellophora europaea CBS 101466])

HSP 1 Score: 69.707 bits (169), Expect = 5.008e-10
Identity = 72/270 (26.67%), Postives = 119/270 (44.07%), Query Frame = 0
Query:   61 STIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITTTNIK--TRMSVFKCET-SIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNIS----PREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVE-AALLDIEPFF----REIVLFHKPSKTLLCADAIWRV-VSPTFSPNIVAATGW---KLFGVSGVSRF-------PYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAA 307
            S     K  +P  PS     +V  D  H + TF  PF+    IK   R ++ K ++ S+ ++SP+A T E    + +  GG   YI+     I+H IF+  W  A P A+++ +      REGD      ++ G +   +     +R  +   E  +  ++E F     +E+ + HKPS+TL+ AD ++ +  +  FS +  AAT     KLFG    +R          W+      RA   +   +V  W + +R +P H D I    
Sbjct:    2 SVSNSAKSLIPSDPS---KVMVIRDVHHTITTFSTPFLRFGRIKIGGRGTLVKLQSGSLAIFSPVALTDEVKSTIAS-KGGAVRYIVAPD--IEHHIFVTPWAHAYPDAEVIGVEGLPEKREGDA-----ATKGVKFHHVFSASNKRDLKVSPEFDSEFEVEYFHSHQNKELAVLHKPSRTLIEADLLFNLPATEQFSKSGTAATSGILTKLFGGIMNTRGNMAWQKRATWYGPGSSDRAAFGESARRVSGW-DFDRIVPCHGDVIETGG 259          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|1054659241|ref|WP_066426380.1| (DUF4336 domain-containing protein [Anabaena sp. 4-3])

HSP 1 Score: 70.8626 bits (172), Expect = 5.228e-10
Identity = 58/181 (32.04%), Postives = 91/181 (50.28%), Query Frame = 0
Query:   68 LFLPFPPSVRPTSLVFSDAQHKVWTFEQPF-ITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVG--GMPTYIIM-QSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPM-LKDSSSGGETAIILPLPFQRGNQPI---VEAALLDIE---PFFREIVLFHKPSKTLLCADAI 236
            L LP  P  R  +L     +  +WTFEQ   I  T +  RM+V K +   +++Y+PIA T EC  +V N+V   G   YII+  S+ ++H IF+  + R  P+A++  ++P +   P  L  S  G        LP      P    ++ A+LDI      F E+ ++H+ S TLL  D++
Sbjct:   22 LALPVYPYSRRRTLCREIVKDTIWTFEQLHGILYTIVPIRMTVIKLDAGGLLVYAPIAPTVECVRLVNNLVAKHGAVKYIILPTSSGLEHKIFVGPFARQFPAARVF-VAPHQWSFPFNLPLSWLGFPQKRTHILPEDSSQAPFGDELDYAILDINLGRGSFVEVAMYHRRSHTLLVTDSV 201          
BLAST of EWM26165.1 vs. NCBI_GenBank
Match: gi|516251552|ref|WP_017655515.1| (DUF4336 domain-containing protein [Fortiea contorta])

HSP 1 Score: 70.4774 bits (171), Expect = 5.716e-10
Identity = 54/179 (30.17%), Postives = 89/179 (49.72%), Query Frame = 0
Query:   70 LPFPPSVRPTSLVFSDAQHKVWTFEQ-PFITTTNIKTRMSVFKCETS-IVMYSPIAATPECCDMVRNIVG--GMPTYIIM-QSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPM-LKDSSSGGETAIILPLPFQRGNQPIV---EAALLDI---EPFFREIVLFHKPSKTLLCADAI 236
            +P  P  +  +L F   +  +W FEQ   I  T +  RM++ K E   +++Y+P+A TPEC  ++  +V   G   YII+  S+ ++H +F+  + R  P A++  ++P +   P  L  S  G        LP      P     + A+LDI   +  F E+  FHK S+TLL  D++
Sbjct:   19 VPLYPYGKRRTLSFEVVKDTIWIFEQLQGILHTIVPIRMTIIKLEAGGLLIYAPVAPTPECVRLINELVSEHGAVKYIILPTSSGLEHKVFVGPFARRFPQAEVF-VAPHQWSFPFNLPLSWLGFPQKRTQVLPTDDRQAPFAHEFDYAILDINLGKGSFVEVAFFHKRSRTLLVTDSV 196          
The following BLAST results are available for this feature:
BLAST of EWM26165.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108161|gb|EWM26165.1|0.000e+0100.00Protein of unknown function DUF4336 [Nannochlorops... [more]
gi|585113160|gb|EWM30496.1|2.987e-2128.15Protein of unknown function DUF4336 [Nannochlorops... [more]
gi|1035641792|gb|OAX83485.1|1.668e-1229.27hypothetical protein ACJ72_02155 [Emmonsia sp. CAC... [more]
gi|821506959|gb|KKZ63705.1|3.379e-1129.07hypothetical protein EMCG_02012 [Emmonsia crescens... [more]
gi|1103679780|gb|OJD16692.1|2.638e-1026.82hypothetical protein AJ78_03162 [Emergomyces paste... [more]
gi|648395666|ref|WP_026087417.1|4.234e-1033.52hypothetical protein [Chlorogloeopsis fritschii][more]
gi|504984933|ref|WP_015172035.1|4.884e-1032.43DUF4336 domain-containing protein [Geitlerinema sp... [more]
gi|671156415|ref|XP_008716773.1|5.008e-1026.67hypothetical protein HMPREF1541_04205 [Cyphellopho... [more]
gi|1054659241|ref|WP_066426380.1|5.228e-1032.04DUF4336 domain-containing protein [Anabaena sp. 4-... [more]
gi|516251552|ref|WP_017655515.1|5.716e-1030.17DUF4336 domain-containing protein [Fortiea contort... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4511rna4511Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications