rna4509, rna4509 (mRNA) Nannochloropsis gaditana

Overview
Namerna4509
Unique Namerna4509
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2569
Alignment locationCM002463.1:780450..781392 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100121g1.10136.mrna
Orig protein idgnl|cribi|Naga_100121g1.10136
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:780450..781392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100121g1gene4351Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4509rna4509-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26164.1cds4498Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4509 ID=rna4509|Name=rna4509|organism=Nannochloropsis gaditana|type=mRNA|length=2569bp
GACATGCTTTTGCGATGCGCCAGATGGGGCAGTGCAGAGCTAGCGGCGGC
TATCATCTACGTCTGTTTGGTCGTTGTTTTTGCCTCAAGCGTTGAAGCCA
AGCCAGCGTCACATAGATGGAGCGGTACCGCAAGCAGGAATTTGGCCTTC
TTACCCAGATTCAGTGGACAAAGATCCTCCGTAGTAACGCCTCGAACGAC
GCCGCCTCCCATGACGATGCCTGACGGCGCCTCTCGGTTCTCTGGATCGA
CTGGACTACATGCAAACCTTATCACAACCTTTTTAGACAGTCTTTTTGGA
CCCTCCAAGTCCAGCAAACGGGGACTCAACATCACCGAGACTCACGAAGT
GGTTGTGATCGGCGCCGGGGTCGCCGGGTTGGTGGCGGCCAAGACTTTGG
CGGCGGAAGGTAAAGATGTGGTGGTTGTAGAAGCGGCCAATCAAGTGGGT
GGACGGGTGCAAACGGATGAGTACAAAGGCTTTCTCCTGGACCGGGGGTT
CCAAGTCTTCATAGAGGCCTATCCCGCAGTTAAACGGCAGCTAGACTACC
AGGCACTCGACCTTCAGTCTTTCTGGCCGGGCGCGCTGGTACGCGCTGAC
GGAGGCTTTCACACCGTAGCAGACCCTTTCCGGCGCCCGCAGGACTTGAT
CAAAGGCTTGCTGGCTCCAGTGGGTTCCTTGGGTGATAAAGTAAAGGTGG
GGCTCCTTCGGGTCCAGGCCACCCTCACACCGCTGCGAGCCATCTTCGAC
AGTGCCGAAACAGACACGCTGACCCACCTGAGCAAAACCAAAGGCCTGAG
CCCCGCGATCATCGAGCGCTTCTTCACGCCCTTCTACCAAGGCATCTACC
TGGCCCCCTTGGCAGAGCAGTCCTCCCGCATGTTCGACTTCGTCTTCCGA
ATGTTCGCCGAAGGAGGCATTTCCCTCCCCGCTCGCGGCATTCGGGCCGT
GCCGGAGCAACTAGCCGCAACCCTGCCCAAGGGGAGCCTGCAGCTGGGCG
TGGCGGCCGTGCGCGTGGGGAGAGGCTTTGTGGAGCTCTCGGACGGCCGG
GTCCTGGGTGCGGAGGCCTTGATCGTCGCCACGGAGGAAGGGACAGCCCG
CAAGCTCTTGAAGAAGGAGCTGGTACGGGAGCGGCCCAAGCCGCTGGGAG
GGAGAGGGTCTACCTGTCTCTACTACGCCGTCCCAGGCCCGGCTCCCATC
CGAGAACCGCTCTTGGTCCTGAACGGGGAAAGCGCCGCGTTGGGAGGGAG
GCCGGGCACAACAAGCGGGGGCACGGGGGGCGGCACGGCTGGAGCAGCCA
AGACTGCAGGCATCCGAACGGGCAGGACGTCGGCGAGAGGCGCCAAGAAA
GCGGGCACGGCCTCCCCTTTTCCTTCTCCCTCGTACCCCCGGCCCGCGTC
GCGTTATCCCGTGAACAACGTGGTTTTTCTCAGTAATATAGCCCCCACCT
ACGCCCCCCCCGGCCAGACCCTGGTCAGTGTCACCGTCGTCGGAACGCCC
GCGGTCAACGATGCCGTCCTGGACAAGGCGGTCAGGGAGCAGCTTGGGGA
CTGGTTCGGACGGGAGGCAGTGCTGGGGCAATGGGAGCTCTTGCGCATCT
ACCGCATCCCCTACGCCCAGCCTCGACAGGTGCCCCCCACGGGCCCGAGC
TTCGTCCTCCCTGCCGCCGTCCACTGGGCGCAGGCCGGGGAGGGCGGGGA
GGGGCTCTTCGTAGCGGGGGACTACAGGAACACGGCCACCTTGAATGGGG
CATTCGAGAGTGGCGAGCGGGCAGCCAAGGCAGTGCTGGCACATTTGGCG
GCCCACCCCCCGGGGGAAGAGCGACGGCAGGGCATAGAGGGAGGGACCTT
GCGGAAGGAGACTGGGGAGGACGGAGATGGGAGAGGCGGGAAAAGAATGC
CCGACTCGGAGGCGCAACCCTCCCTGGCTGCGTCGTCCTCCTCCACGAGC
ACGTCCGCCCTCCCCAGCCGTCCCTCCATGCCCAGACGGAGCCACCGAGG
CCAAGACGCGACGGAGGCCTTCGCGCGCTTCCGTCAAGAGAACGAGCGGG
GCCGGAGCACCATCCAGGGCGTGGTTTCTGGTATGGAAGGCCGCCGCGGC
AGTCCAATAGTGTCGCGTTTCAGAGAGGTCAGTGAGGCCCGTCAGTCGCC
CGCGGTGGCTGAAAAGGATATGGCGAGAGCGCGCGCAGCTGCCTTGCGGG
TCGTAGCGCCACAGCCGGCGTCGAGTGTGGTGGACGAGGGATTCAACCTG
TCACGGTTTCGAAGCGACCGTGACGAGAGGAAACGCATCATCATGGAGAA
AACTGCATTTACCGCGCCCAAGGAGGGAATGAGGCAAATGACATCATCTC
CAGCCTTCACTCCGTCACCTGCCGCGTCGACCAGTGCTACATTACGAAGC
AGTGGAGTCCGCAGCGATGCAAGTAGCGGTCGAGAATCACGCTTTCGAGA
TTAGTTTGGAGTGACCAGTTCTTGATGCGAATGAATTCGAAGTGTTCTAT
GATATGTTCTTAAATGTTGTGGTATTTGAAAGAATTACATTTATGCCACA
GTTGTGCATTTCGCTTCGA
back to top

protein sequence of rna4509

>rna4509-protein ID=rna4509-protein|Name=rna4509|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MLYFRWPRLITLLLLTSWLVWCEGFCHRLIFSTGTRQCCGDRAIPARYFS
IIASEQHILTPGAACRVRRESGSNVPTTSAPPATDFPPSSPVELHLLEGD
VVEYRITEEQRRKGQLPALDTRTLGIGVVNQFMRIHPLCRRSPGSPELFF
DEEQDALEENVNDIVVRVINQVWYQQRCIEDRKINPHGEEAEDMYILEEG
LSPGCGPAERF
back to top

mRNA from alignment at CM002463.1:780450..781392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4509 ID=rna4509|Name=rna4509|organism=Nannochloropsis gaditana|type=mRNA|length=943bp|location=Sequence derived from alignment at CM002463.1:780450..781392- (Nannochloropsis gaditana)
TTGTATCTCCTCCCACAAGCATGTTGTACTTCAGATGGCCGAGGTTGATA
ACACTGTTGCTTCTCACATCATGGCTCGTTTGGTGTGAAGGGTAAGTGCT
TTCGTAATGTATTGGCCATTTCTGTCCCGATTACACCAGCATACAACATC
CCATGTCACAGCTTTTGCCATCGATTGATTTTCTCAACGGGAACGCGGCA
ATGTTGCGGCGATCGAGCAATACCTGCAAGATACTTTTCGATTATTGCTT
CCGAGCAGCACATTCTAACACCTGGTGCTGCCTGTCGCGTCCGTCGAGAA
TCAGGCTCGAACGTCCCGACGACAAGCGCGCCGCCTGCCACCGATTTCCC
TCCCTCTTCTCCCGTAGAACTTCATTTATTGGAGGGTGACGTCGTCGAGT
ACCGTATTACGGAGGAGCAGCGTCGGAAAGGCCAACTTCCAGCGCTAGAC
ACGCGGACGTTGGGGATAGGCGTGGTCAATCAGTTCATGCGTATCCATCC
CTTGTGCCGTCGAAGCCCTGGCTCTCCCGAACTCTTTTTCGACGAAGAGC
AGGACGCACTTGAAGAGAATGTAAATGACATCGTGGTGCGTGTCATCAAT
CAAGTGTGGTACCAGCAACGGTGCATCGAGGACAGGAAAATTAATCCGCA
CGGGGAGGAAGCGGAAGACATGTACATTTTGGAGGAGGGTTTGAGTCCGG
GATGCGGCCCAGCCGAGCGATTTTGAAGATACAATGAGATGACGACTGTG
CATAAAGTGTGTGAGACACTTTCTAGCGACAGAAATAGGCGATGTAAAAG
GAAAACAGGAGATTGGGCAGATCCCGCGCCGGGTCAGACGGACGGCCTCC
TAGGGCGCCCAGCACTGTGAAGTACTGTGTTTACATTGGTGTCCTGTGCA
ATACAGTTTTTCGAGCCCAAGCCTGCTCCTCCCATTCATCAGC
back to top

Coding sequence (CDS) from alignment at CM002463.1:780450..781392-

>rna4509 ID=rna4509|Name=rna4509|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at CM002463.1:780450..781392- (Nannochloropsis gaditana)
CTTTTGCCATCGATTGATTTTCTCAACGGGAACGCGGCAATGTTGCGGCG
ATCGAGCAATACCTGCAAGATACTTTTCGATTATTGCTTCCGAGCAGCAC
ATTCTAACACCTGGTGCTGCCTGTCGCGTCCGTCGAGAATCAGGCTCGAA
CGTCCCGACGACAAGCGCGCCGCCTGCCACCGATTTCCCTCCCTCTTCTC
CCGTAGAACTTCATTTATTGGAGGGTGACGTCGTCGAGTACCGTATTACG
GAGGAGCAGCGTCGGAAAGGCCAACTTCCAGCGCTAGACACGCGGACGTT
GGGGATAGGCGTGGTCAATCAGTTCATGCGTATCCATCCCTTGTGCCGTC
GAAGCCCTGGCTCTCCCGAACTCTTTTTCGACGAAGAGCAGGACGCACTT
GAAGAGAATGTAAATGACATCGTGGTGCGTGTCATCAATCAAGTGTGGTA
CCAGCAACGGTGCATCGAGGACAGGAAAATTAATCCGCACGGGGAGGAAG
CGGAAGACATGTACATTTTGGAGGAGGGTTTGAGTCCGGGATGCGGCCCA
GCCGAGCGATTTTGAATGTTGTACTTCAGATGGCCGAGGTTGATAACACT
GTTGCTTCTCACATCATGGCTCGTTTGGTGTGAAGGCTTTTGCCATCGAT
TGATTTTCTCAACGGGAACGCGGCAATGTTGCGGCGATCGAGCAATACCT
GCAAGATACTTTTCGATTATTGCTTCCGAGCAGCACATTCTAACACCTGG
TGCTGCCTGTCGCGTCCGTCGAGAATCAGGCTCGAACGTCCCGACGACAA
GCGCGCCGCCTGCCACCGATTTCCCTCCCTCTTCTCCCGTAGAACTTCAT
TTATTGGAGGGTGACGTCGTCGAGTACCGTATTACGGAGGAGCAGCGTCG
GAAAGGCCAACTTCCAGCGCTAGACACGCGGACGTTGGGGATAGGCGTGG
TCAATCAGTTCATGCGTATCCATCCCTTGTGCCGTCGAAGCCCTGGCTCT
CCCGAACTCTTTTTCGACGAAGAGCAGGACGCACTTGAAGAGAATGTAAA
TGACATCGTGGTGCGTGTCATCAATCAAGTGTGGTACCAGCAACGGTGCA
TCGAGGACAGGAAAATTAATCCGCACGGGGAGGAAGCGGAAGACATGTAC
ATTTTGGAGGAGGGTTTGAGTCCGGGATGCGGCCCAGCCGAGCGATTTTG
AATGTTGTACTTCAGATGGCCGAGGTTGATAACACTGTTGCTTCTCACAT
CATGGCTCGTTTGGTGTGAAGG
back to top
Synonyms
Publications