rna450, rna450 (mRNA) Nannochloropsis gaditana

Overview
Namerna450
Unique Namerna450
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length654
Alignment locationCM002455.1:1120972..1122793 +

Link to JBrowse

Properties
Property NameValue
Producthippocampus abundant transcript 1
Orig transcript idgnl|cribi|Naga_100003g31.1793.mrna
Orig protein idgnl|cribi|Naga_100003g31.1793
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1120972..1122793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g31gene434Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna450rna450-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30276.1cds450Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna450 ID=rna450|Name=rna450|organism=Nannochloropsis gaditana|type=mRNA|length=654bp
TCGATTTCAGGCACTACCCAATGCGAACACCACCCTCACTTCATTACTTG
ACATAGCAGGCGTAGATTGCACGGATCCGGAAGCAGGTGTTGCAAAAGCA
CTCTAGCCTGTCGAGCAGCAGCCCATTAAAGCACGTAAAGAAGCTGCCTA
CCCTTCATTGGAAAAAGGGTAGGAGGTCAAGAAAAAGTAATCCACTCGAG
TTGCTTCTCGGGACTTTTTGCTAGTCAATTTTTCGGCAGACTTTTCTTGC
GACTGAGGGATAGCTATAGTGCAAAGGTGTACAAGAACTGACATCAATAC
TTCATGAATGTCGGGGGCCTCAGCGCATTTCGTCGCTTGAGCACGATCGC
ATCAGGAGGACAGGCCTTGCAGCTATATCGCGCGATCTGGAGAGCCTCCC
GGGGTATGCCTACGATACGTCGGAAGAAATTTGTTCGCGATAAGCTACGA
GAGGAGTTTGAGGCAGCTAGACACGAGACAGACCCAAGTAAAGTCGCCTT
TGCCTTGGAATACGCCGCCCTTCAGCTTGACACCGTGAGAATCCAAGCGG
CTTCCTTGTCCAAGCTAGTCTGTGATCCAATGTACCACAACAAGCGCGAA
ATTTGATAAAAGAAAATTATTGGAAAGAATTCAGGCTTCATACTTTACAT
TACG
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protein sequence of rna450

>rna450-protein ID=rna450-protein|Name=rna450|organism=Nannochloropsis gaditana|type=polypeptide|length=552bp
MSTSTFAQLCARSEAFFSSVVSSPKLIPEAARATSAATRTSRPSPATSSP
CTVDERRYLYVLPVLFFEYLALSLSRALLPGLMNSAFGNYTYHVLGIVET
AKGILAFMACPLFGKLSDVVGRRTGLFITVLGTTLPISSLALTQSMWIYA
VAQGLSGVFASTFTITFAYIADLVHKERRSSAYGLALATFGLSYCLGPIL
GGFLAERFSYRAVFAISVAQVVLAVAYIVLILPESRSTEQQRCRRGIRLL
AAGMPPPEDYLPMSWSPFSVLEVFSGEPLLRSVSKIVFLYYTGVWAIVST
LMVHVQRSFHADEVTLGELMSAFGVCTMLSEGVLVRLMVPHFGEKGAMQI
GLAAFALQCAFFSFARHIHDVLFSLLFSTLANLVYPAVSSLVSRSVPPSK
QGEALGAMNGIRALTEGFGPLLFGSLMFLCQDTRAPGAPYLLASACSVAA
LLQTNKLPSEAEIWEYEKRVSKQAGLQEAVGLLSEEGPCEEEGEGPNEEE
KESESEQQSPEGHLPKDLTKQSTTKPSASTLQASQLGQKHEPKHELKQVC
SV
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mRNA from alignment at CM002455.1:1120972..1122793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna450 ID=rna450|Name=rna450|organism=Nannochloropsis gaditana|type=mRNA|length=1822bp|location=Sequence derived from alignment at CM002455.1:1120972..1122793+ (Nannochloropsis gaditana)
GCCCGCCTTGCCCTGTTCCATGACAACTCACCACAATATTCATACACGTT
ACTCAGTTTCCCTCGATACAGCATGTCCACAAGCACGTTCGCGCAGTTGT
GTGCGCGGTCGGAGGCATTTTTCTCTTCCGTAGTGTCATCACCCAAACTC
ATACCAGAAGCGGCGCGCGCGACCTCTGCTGCCACTCGCAcgtcccgtcc
ctcccccgctacAAGCAGTCCTTGCACGGTAGATGAGCGGAGGTATTTGT
ACGTGCTTCCGGTTCTCTTTTTTGAATACTTGGCGCTCAGTCTCAGCCGT
GCCTTGTTGCCAGGCCTGATGAATTCCGCTTTTGGAAACTACACGTACCA
TGTCTTGGGCATAGTTGAGACGGCGAAAGGCATCCTGGCATTTATGGCAT
GCCCCTTGTTTGGGAAGCTCAGCGACGTCGTAGGACGACGGACTGGGCTT
TTTATTACTGTACTAGGTACAACCCTGCCCATTTCTAGCTTGGCCCTGAC
GCAGAGCATGTGGATTTACGCTGTGGCTCAGGGCTTGTCAGGCGTCTTTG
CTTCCACGTTCACTATCACGTTTGCCTACATCGCGGACCTGGTGCACAAG
GAGCGACGATCGTCCGCGTACGGCCTAGCACTCGCCACCTTCGGGCTCTC
GTATTGTCTTGGGCCCATCCTTGGGGGGTTCCTTGCCGAGCGGTTTTCTT
ACCGCGCTGTCTTCGCCATCTCGGTGGCTCAGGTCGTCCTGGCGGTGGCG
TACATTGTCTTGATCTTGCCGGAATCGCGCTCGACGGAGCAACAGCGGTG
TCGACGGGGAATCCGTTTACTTGCCGCAGGGATGCCCCCCCCGGAAGATT
ACTTGCCCATGTCCTGGAGCCCTTTCTCCGTCTTGGAGGTCTTCTCGGGC
GAGCCTCTCCTACGGAGCGTCAGCAAGATAGTCTTTCTGTACTACACAGG
GGTGTGGGCCATCGTCTCCACCCTGATGGTGCACGTGCAGCGATCTTTCC
ACGCGGACGAGGTGACGCTCGGGGAGCTCATGTCCGCCTTCGGGGTCTGC
ACCATGCTCTCCGAGGGCGTCCTCGTGCGCCTGATGGTGCCCCACttcgg
ggaaaaaggggccATGCAGATAGGCCTCGCGGCCTTCGCCTTGCAATGCG
CTTTTTTCAGCTTCGCCCGGCACATCCACGacgtcctcttttccctcctc
ttctcgacCTTGGCCAACCTTGTCTACCCTGCCGTCTCCTCGCTCGTCTC
GCGCagcgtgcctccctccaaacaGGGAGAGGCTCTGGGGGCCATGAATG
GAATCCGGGCCCTGACCGAAGGCTTCGGCCCGCTCCTTTTCGGGTCCCTC
ATGTTCCTCTGCCAAGACACCAGAGCGCCTGGAGCGCCCTACTTGTTGGC
AAGTGCGTGCAGTGTGGCGGCGTTGCTGCAAACGAACAAGCTCCCGAGCG
AGGCTGAAATCTGGGAGTACGAGAAGAGGGTCTCCAAGCAAGCCGGGCTG
CAGGAGGCTGTTGGACTCTTGTCGGAGGAAGGCCCatgtgaagaggaggg
ggaaggcccgaacgaggaggagaaggaaagtgaGAGCGAGCAACAGAGCC
CGGAGGGGCATCTTCCCAAGGACTTGACGAAACAGTCAACGACGAAGCCG
TCGGCCTCGACACTCCAGGCGTCCCAACTCGGCCAAAAACACGAGCCAAA
ACATGAGCTAAAGCAAGTTTGTTCTGTGTAGGGGCGGCCCTGAGGTAACA
TGACTGTAGAAATCTGGTGTAAAGAAAAGTATTGACCCTCGTTTGCAGTG
ACAACAGCCAAAGCTCGAAAGC
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Coding sequence (CDS) from alignment at CM002455.1:1120972..1122793+

>rna450 ID=rna450|Name=rna450|organism=Nannochloropsis gaditana|type=CDS|length=1659bp|location=Sequence derived from alignment at CM002455.1:1120972..1122793+ (Nannochloropsis gaditana)
ATGTCCACAAGCACGTTCGCGCAGTTGTGTGCGCGGTCGGAGGCATTTTT
CTCTTCCGTAGTGTCATCACCCAAACTCATACCAGAAGCGGCGCGCGCGA
CCTCTGCTGCCACTCGCAcgtcccgtccctcccccgctacAAGCAGTCCT
TGCACGGTAGATGAGCGGAGGTATTTGTACGTGCTTCCGGTTCTCTTTTT
TGAATACTTGGCGCTCAGTCTCAGCCGTGCCTTGTTGCCAGGCCTGATGA
ATTCCGCTTTTGGAAACTACACGTACCATGTCTTGGGCATAGTTGAGACG
GCGAAAGGCATCCTGGCATTTATGGCATGCCCCTTGTTTGGGAAGCTCAG
CGACGTCGTAGGACGACGGACTGGGCTTTTTATTACTGTACTAGGTACAA
CCCTGCCCATTTCTAGCTTGGCCCTGACGCAGAGCATGTGGATTTACGCT
GTGGCTCAGGGCTTGTCAGGCGTCTTTGCTTCCACGTTCACTATCACGTT
TGCCTACATCGCGGACCTGGTGCACAAGGAGCGACGATCGTCCGCGTACG
GCCTAGCACTCGCCACCTTCGGGCTCTCGTATTGTCTTGGGCCCATCCTT
GGGGGGTTCCTTGCCGAGCGGTTTTCTTACCGCGCTGTCTTCGCCATCTC
GGTGGCTCAGGTCGTCCTGGCGGTGGCGTACATTGTCTTGATCTTGCCGG
AATCGCGCTCGACGGAGCAACAGCGGTGTCGACGGGGAATCCGTTTACTT
GCCGCAGGGATGCCCCCCCCGGAAGATTACTTGCCCATGTCCTGGAGCCC
TTTCTCCGTCTTGGAGGTCTTCTCGGGCGAGCCTCTCCTACGGAGCGTCA
GCAAGATAGTCTTTCTGTACTACACAGGGGTGTGGGCCATCGTCTCCACC
CTGATGGTGCACGTGCAGCGATCTTTCCACGCGGACGAGGTGACGCTCGG
GGAGCTCATGTCCGCCTTCGGGGTCTGCACCATGCTCTCCGAGGGCGTCC
TCGTGCGCCTGATGGTGCCCCACttcggggaaaaaggggccATGCAGATA
GGCCTCGCGGCCTTCGCCTTGCAATGCGCTTTTTTCAGCTTCGCCCGGCA
CATCCACGacgtcctcttttccctcctcttctcgacCTTGGCCAACCTTG
TCTACCCTGCCGTCTCCTCGCTCGTCTCGCGCagcgtgcctccctccaaa
caGGGAGAGGCTCTGGGGGCCATGAATGGAATCCGGGCCCTGACCGAAGG
CTTCGGCCCGCTCCTTTTCGGGTCCCTCATGTTCCTCTGCCAAGACACCA
GAGCGCCTGGAGCGCCCTACTTGTTGGCAAGTGCGTGCAGTGTGGCGGCG
TTGCTGCAAACGAACAAGCTCCCGAGCGAGGCTGAAATCTGGGAGTACGA
GAAGAGGGTCTCCAAGCAAGCCGGGCTGCAGGAGGCTGTTGGACTCTTGT
CGGAGGAAGGCCCatgtgaagaggagggggaaggcccgaacgaggaggag
aaggaaagtgaGAGCGAGCAACAGAGCCCGGAGGGGCATCTTCCCAAGGA
CTTGACGAAACAGTCAACGACGAAGCCGTCGGCCTCGACACTCCAGGCGT
CCCAACTCGGCCAAAAACACGAGCCAAAACATGAGCTAAAGCAAGTTTGT
TCTGTGTAG
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Synonyms
Publications