rna4497, rna4497 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4497
Unique Name	rna4497
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1737
Alignment location	CM002463.1:745820..747907 +

Link to JBrowse

Properties


Property Name	Value
Product	Polyprenyl synthetase
Orig transcript id	gnl\|cribi\|Naga_100072g15.8009.mrna
Orig protein id	gnl\|cribi\|Naga_100072g15.8009
Gene	SPPS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:745820..747907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SPPS	gene4339	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4497	rna4497-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26176.1	cds4486	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:745820..747907+
coding sequence from alignment at CM002463.1:745820..747907+

mRNA sequence

>rna4497 ID=rna4497|Name=rna4497|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp
CGGCTGTAGGATGTACGGAATGAGATGTGAGTACATAAAAGCATTTCTCA
GTGCGGCGGAGAAGGGATGACCTCCTCCTCCTTCTGCGCCCCAACCATCC
ATGATCTCTGGAGTCTCAGGTATTCGCTACCGCGGATAAACACACAGCCC
CGTTTTCACCGCATGCCATGCATCATCAAGATCAAACGTTTGAAAGACCT
AGTAACCCATCGTCCGGAGAAAAGGCGTGACTTAGCTGCCACCAGACCGG
CTACCTGACCTCTCCAGAAAAGAGCTTCTAGCGCCTTCTAATTCGAGCTG
CTCACTCTCCTTGATGGGACCATTAAAAAGTACCGTGGAAGCCCAAAAAG
CGTGCATGACTGGCCGGAGGGACTACTGTAGCAGTCTATGCTATCTTGGC
GGACATACACCACTTTTTAATATCATTTTGCACGGAAATAGTTCTGCTTT
CATCCTCCTCCTCCTAGGAGTCCATGCTTTCTTCCCTCATCACGATGTCT
AATATAAAACAATGTACAAGGTTGGCCTTGCCGACTGCGCGATGTCGCAC
GCCGGGTTTGCTCGCGGTGATACCGGCATTCACACCGTCGAAGGCAACTT
GGCAGGGGGGCGTGCGGCTAAGCTGACCCAAAAACGGGAAAAGGACCAGA
AGGAGTACGAGGCCAAAAAGCGCAAGATCCAAGATGACTCTCAACGAGCT
GTCGGGGGGATCGACCAGAAGTTCAAAAGCATTCAGCAGAATGCCTTCAC
TCTGGACTTCGTGGGCCTGAAGACCAAGGAGGAGCTGCTCAACTTAAAAG
GGGCGGCGGAACAGGAGGCGGCGCGTCAGGAAAAACTCGAGGCGGAGGAA
GCATTGCGTAAGGAGAGAGAAGAGAGGAAGAGAAGGAAGGAGAAGCAGAA
GAAAACCGCCCGTTTGAGTTTTGCGATGGGGGGCGAGGAGGAGGAGGAAG
AGGAGGAGGAGGGAGGGAGTGGCGGGGACAGGCCCACCTCTGCCAAGGGA
AACAAAGCCGCCAATGCTTCGAATGACAAGGAGATGAGCATCCCCGGCAC
GAGCGCGGGAGAAAGCGCGTTGGGTCGAGGGGAGGAGACGTTGACGGTGA
AGAAGAGGAAGAAACTTGTAAATCCGGGGGCTGAGACGAGTTATCTCCGA
GACCCAGAGGCGGAGAAGGAGGAGGCGATTCTTCGGGAGCGCTTGAAGCA
GGAATGGCTGGAGGAGCAGGACCGGATCAAGGAGGAGGTGCTGGAGGTGA
CGTACTCGTACTGGGACGGATCGGGGCACCGGCGCGTGCTTCGGTGCAAG
AAGGGCGTGAGCATAGGGGCCTTCCTCCAACAGGTGAAGGCGCAGGTGGC
GGTGGAGTTCCCGGACCTCCGGGGGATCTCGCCGGACGACATGATGTATA
TCAAGGAGGATCTGATCATCCCCCACAACGTCTCCTTCTACGACCTGATC
GTCACCAAGGCCCGGGGCAAGTCCGGCCCCCTTTTCCACTTCGACGTCCA
CGACGATGTGCGCCTGACCATGGACGCGCGCGTCGAGAAGGACGAGAGCC
ACCCGGGCAAGGTGGTGGACCGGAAGTGGTACGAGCGGAACAAGCACATC
TTCCCCGCCAGCCGGTGGGAGGTGTATGACCCCAAGGTGGTGCGCGGCGG
TTACAGCATCCACGGGGGAGAGGTGCAGGCGAAGAAGTAAAAAAAAGGCG
CGAAGGCTTCCCGCTGGAAGGAAATATGCATGCATGC

protein sequence of rna4497

>rna4497-protein ID=rna4497-protein|Name=rna4497|organism=Nannochloropsis gaditana|type=polypeptide|length=598bp
MVARFGLSGPRSYQHSKIEGRSIESATSSPMTTTSIRRHRISTASLLAME
TNSTRDSLRTQQQDQPHHAGRRRRTSGSYAAWGLASAATAVMYFATVAHG
FVTPLTSAPFRQAEAGNGLVSGSFAGKRSVCAGQSATSLGAGVLSKLDFK
PAVDVYAKFPEPPKTAGTSTGTSTLSHEEVTLLTTAASQPSIVMSLDGPA
PNDVDPFALVKKDLAPFSDSIKELVETENPVLTAAAKHFFEKRHGKRFRP
TIAMLMSRAVQAGGAIDRDVGGAMATPMPVVDPLRYQRQSQLAQITEMIH
VASLIHDDVLDEADTRRGDLAVHKLYSNKVAVLAGDYLLARASVLLARLE
NVQVVEIMANALDALVQGEIMQAKSSAKDLLDLGHYLRKSYYKTASLICN
SCCSAALLGGYTYGSPTTVAAEKYGYHLGLAYQVIDDVLDFTGTADVLGK
PAMADMTLGLATAPILYAAEEKKELKPLIKRRFKEQGDVEQTYKLVMGTE
GVERAYQLAVFHAQRAVDAIASFPPSEAKDGLIKLAHMAPVRIARHTTTS
VYFYRATAEIFFFSFFRRAELAKLWRVREGGGEGLDDVTCETATRRRW

mRNA from alignment at CM002463.1:745820..747907+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4497 ID=rna4497|Name=rna4497|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp|location=Sequence derived from alignment at CM002463.1:745820..747907+ (Nannochloropsis gaditana)
ATGGTGGCACGTCGGGGGAAGGTTTGGGACACGATGCAAGGGCAGTGACG
GGCACGGGCGTGGTGCTGGCAGCGGTATCCGCCCAGAGCCCGGGAGGAGT
CGCTCCCGTGAAAGTGCTGGCAGTGTCGACAAGCCCACTGCTCCCCCTGC
GCAGTTCAACACGCATCACTCTTTGTTGTCACATTTCATGTGCTCATGGT
TTCCCACCATCTTGCCTTTTATTGTCCTTTGCCCATGTAGGATTTGGGTT
GAGCGGGCCTAGGTCATACCAGCACTCCAAGATCGAAGGGCGAAGCATCG
AGTCAGCAACATCATCCCCGATGACGACCACAAGCATTAGAAGACACAGA
ATCAGCACGGCATCACTCTTGGCTATGGAGACGAATAGCACTCGTGATAG
CTTGCGGACGCAGCAGCAAGACCAGCCCCATcatgcgggaagaagaagac
ggacATCTGGATCCTATGCCGCCTGGGGCCTGGCATCGGCAGCCACGGCG
GTCATGTACTTCGCCACAGTGGCTCACGGCTTCGTGACGCCGTTGACTTC
CGCTCCCTTCAGGCAAGCAGAGGCGGGAAACGGCCTTGTGTCGGGGAGCT
TTGCGGGCAAACGTTCAGTCTGCGCTGGGCAGTCGGCGACAagcctgggg
gcgggcgtgtTGAGCAAGCTCGACTTCAAGCCTGCCGTGGATGTATACGC
CAAGTTTCCCGAACCACCCAAGACGGCGGGCACAAGCACGGGTACATCCA
CCTTGTCGCACGAGGAGGTGACGCTCTTGACCACCGCGGCCTCCCAACCG
AGCATCGTCATGTCCCTGGACGGCCCGGCGCCGAATGACGTGGACCCTTT
CGCCCTGGTCAAGAAGGACCTGGCGCCCTTCTCGGACTCGatcaaggagc
tggtggagacGGAAAATCCGGTCCTGACGGCCGCGGCGAAGCACTTCTTC
GAGAAGAGGCACGGGAAGCGCTTCCGCCCGACCATTGCTATGCTCATGTC
GCGCGCCGtgcaggcaggcggggctATCGACCGGGACGTGGGTGGGGCCA
TGGCCACGCCTATGCCCGTCGTGGATCCGCTCCGCTATCAGCGCCAGTCC
CAGCTGGCGCAGATCACGGAGATGATCCACGTGGCGTCGCTCATCCACGA
CGAcgtcctggacgaggccgacACGCGACGGGGAGACCTGGCGGTCCACA
AGCTCTACTCGAACAAGGTTGCGGTGTTGGCAGGGGACTACCTCCTGGCC
CGCGCCTCCGTGCTGCTGGCGCGGTTGGAAAAtgtgcaggtggtggagat
caTGGCGAACGCCCTGGACGCCCTGGTGCAAGGGGAGATCATGCAAGCCA
AGTCCAGCGCCAAGGACCTGCTGGACCTGGGGCACTACCTGCGAAAGAGC
TACTACAAAACAGCCTCCCTCATCTGTAACTCCTGCTGCTCGGCCGCCTT
GTTGGGGGGATACACGTACGGGTCGCCGACCACCGTGGCGGCCGAGAAGT
ACGGCTACCACTTGGGCCTGGCGTACCAGGTGATCGACGACGTGCTGGAC
TTTACGGGGACGGCGGACGTGCTGGGCAAGCCGGCCATGGCCGACATGAC
GCTGGGGCTGGCGACGGCGCCGATCCTGtacgcggcggaggagaagaagg
agctgAAACCCCTGATCAAGCGCCGCTTTaaggagcagggggacgtGGAA
CAGACATACAAACTGGTCATGGGTACGGAGGGAGTGGAACGCGCCTATCA
ACTGGCAGTGTTCCACGCCCAGCGAGCAGTGGATGCGATcgcgtcttttc
ctccctctgagGCCAAGGACGGCCTGATAAAGCTCGCGCACATGGTGCTG
ACCCGGAAGAGCTAGGGCGAGGGCTGGTGGGGCGGTGGATtcgttggagg
aagaggcgccaGTTAGGATAGCTCGGCATACTACGACCTCTGTGTATTTT
TATAGGGCAACAGCagaaattttctttttttctttttttcgtAGAGCGGA
ACTCGCCAAGCTGTGGAGAgtaagagaaggagggggcgaggggctAGATG
ACGTGACTTGTGAAACTGCTACTCGGAGGCGGTGGTAG

Coding sequence (CDS) from alignment at CM002463.1:745820..747907+

>rna4497 ID=rna4497|Name=rna4497|organism=Nannochloropsis gaditana|type=CDS|length=5391bp|location=Sequence derived from alignment at CM002463.1:745820..747907+ (Nannochloropsis gaditana)
ATGGTGGCACGATTTGGGTTGAGCGGGCCTAGGTCATACCAGCACTCCAA
GATCGAAGGGCGAAGCATCGAGTCAGCAACATCATCCCCGATGACGACCA
CAAGCATTAGAAGACACAGAATCAGCACGGCATCACTCTTGGCTATGGAG
ACGAATAGCACTCGTGATAGCTTGCGGACGCAGCAGCAAGACCAGCCCCA
TcatgcgggaagaagaagacggacATCTGGATCCTATGCCGCCTGGGGCC
TGGCATCGGCAGCCACGGCGGTCATGTACTTCGCCACAGTGGCTCACGGC
TTCGTGACGCCGTTGACTTCCGCTCCCTTCAGGCAAGCAGAGGCGGGAAA
CGGCCTTGTGTCGGGGAGCTTTGCGGGCAAACGTTCAGTCTGCGCTGGGC
AGTCGGCGACAagcctgggggcgggcgtgtTGAGCAAGCTCGACTTCAAG
CCTGCCGTGGATGTATACGCCAAGTTTCCCGAACCACCCAAGACGGCGGG
CACAAGCACGGGTACATCCACCTTGTCGCACGAGGAGGTGACGCTCTTGA
CCACCGCGGCCTCCCAACCGAGCATCGTCATGTCCCTGGACGGCCCGGCG
CCGAATGACGTGGACCCTTTCGCCCTGGTCAAGAAGGACCTGGCGCCCTT
CTCGGACTCGatcaaggagctggtggagacGGAAAATCCGGTCCTGACGG
CCGCGGCGAAGCACTTCTTCGAGAAGAGGCACGGGAAGCGCTTCCGCCCG
ACCATTGCTATGCTCATGTCGCGCGCCGtgcaggcaggcggggctATCGA
CCGGGACGTGGGTGGGGCCATGGCCACGCCTATGCCCGTCGTGGATCCGC
TCCGCTATCAGCGCCAGTCCCAGCTGGCGCAGATCACGGAGATGATCCAC
GTGGCGTCGCTCATCCACGACGAcgtcctggacgaggccgacACGCGACG
GGGAGACCTGGCGGTCCACAAGCTCTACTCGAACAAGGTTGCGGTGTTGG
CAGGGGACTACCTCCTGGCCCGCGCCTCCGTGCTGCTGGCGCGGTTGGAA
AAtgtgcaggtggtggagatcaTGGCGAACGCCCTGGACGCCCTGGTGCA
AGGGGAGATCATGCAAGCCAAGTCCAGCGCCAAGGACCTGCTGGACCTGG
GGCACTACCTGCGAAAGAGCTACTACAAAACAGCCTCCCTCATCTGTAAC
TCCTGCTGCTCGGCCGCCTTGTTGGGGGGATACACGTACGGGTCGCCGAC
CACCGTGGCGGCCGAGAAGTACGGCTACCACTTGGGCCTGGCGTACCAGG
TGATCGACGACGTGCTGGACTTTACGGGGACGGCGGACGTGCTGGGCAAG
CCGGCCATGGCCGACATGACGCTGGGGCTGGCGACGGCGCCGATCCTGta
cgcggcggaggagaagaaggagctgAAACCCCTGATCAAGCGCCGCTTTa
aggagcagggggacgtGGAACAGACATACAAACTGGTCATGGGTACGGAG
GGAGTGGAACGCGCCTATCAACTGGCAGTGTTCCACGCCCAGCGAGCAGT
GGATGCGATcgcgtcttttcctccctctgagGCCAAGGACGGCCTGATAA
AGCTCGCGCACATGgcgccaGTTAGGATAGCTCGGCATACTACGACCTCT
GTGTATTTTTATAGGGCAACAGCagaaattttctttttttctttttttcg
tAGAGCGGAACTCGCCAAGCTGTGGAGAgtaagagaaggagggggcgagg
ggctAGATGACGTGACTTGTGAAACTGCTACTCGGAGGCGGTGGTAGATG
GTGGCACGATTTGGGTTGAGCGGGCCTAGGTCATACCAGCACTCCAAGAT
CGAAGGGCGAAGCATCGAGTCAGCAACATCATCCCCGATGACGACCACAA
GCATTAGAAGACACAGAATCAGCACGGCATCACTCTTGGCTATGGAGACG
AATAGCACTCGTGATAGCTTGCGGACGCAGCAGCAAGACCAGCCCCATca
tgcgggaagaagaagacggacATCTGGATCCTATGCCGCCTGGGGCCTGG
CATCGGCAGCCACGGCGGTCATGTACTTCGCCACAGTGGCTCACGGCTTC
GTGACGCCGTTGACTTCCGCTCCCTTCAGGCAAGCAGAGGCGGGAAACGG
CCTTGTGTCGGGGAGCTTTGCGGGCAAACGTTCAGTCTGCGCTGGGCAGT
CGGCGACAagcctgggggcgggcgtgtTGAGCAAGCTCGACTTCAAGCCT
GCCGTGGATGTATACGCCAAGTTTCCCGAACCACCCAAGACGGCGGGCAC
AAGCACGGGTACATCCACCTTGTCGCACGAGGAGGTGACGCTCTTGACCA
CCGCGGCCTCCCAACCGAGCATCGTCATGTCCCTGGACGGCCCGGCGCCG
AATGACGTGGACCCTTTCGCCCTGGTCAAGAAGGACCTGGCGCCCTTCTC
GGACTCGatcaaggagctggtggagacGGAAAATCCGGTCCTGACGGCCG
CGGCGAAGCACTTCTTCGAGAAGAGGCACGGGAAGCGCTTCCGCCCGACC
ATTGCTATGCTCATGTCGCGCGCCGtgcaggcaggcggggctATCGACCG
GGACGTGGGTGGGGCCATGGCCACGCCTATGCCCGTCGTGGATCCGCTCC
GCTATCAGCGCCAGTCCCAGCTGGCGCAGATCACGGAGATGATCCACGTG
GCGTCGCTCATCCACGACGAcgtcctggacgaggccgacACGCGACGGGG
AGACCTGGCGGTCCACAAGCTCTACTCGAACAAGGTTGCGGTGTTGGCAG
GGGACTACCTCCTGGCCCGCGCCTCCGTGCTGCTGGCGCGGTTGGAAAAt
gtgcaggtggtggagatcaTGGCGAACGCCCTGGACGCCCTGGTGCAAGG
GGAGATCATGCAAGCCAAGTCCAGCGCCAAGGACCTGCTGGACCTGGGGC
ACTACCTGCGAAAGAGCTACTACAAAACAGCCTCCCTCATCTGTAACTCC
TGCTGCTCGGCCGCCTTGTTGGGGGGATACACGTACGGGTCGCCGACCAC
CGTGGCGGCCGAGAAGTACGGCTACCACTTGGGCCTGGCGTACCAGGTGA
TCGACGACGTGCTGGACTTTACGGGGACGGCGGACGTGCTGGGCAAGCCG
GCCATGGCCGACATGACGCTGGGGCTGGCGACGGCGCCGATCCTGtacgc
ggcggaggagaagaaggagctgAAACCCCTGATCAAGCGCCGCTTTaagg
agcagggggacgtGGAACAGACATACAAACTGGTCATGGGTACGGAGGGA
GTGGAACGCGCCTATCAACTGGCAGTGTTCCACGCCCAGCGAGCAGTGGA
TGCGATcgcgtcttttcctccctctgagGCCAAGGACGGCCTGATAAAGC
TCGCGCACATGgcgccaGTTAGGATAGCTCGGCATACTACGACCTCTGTG
TATTTTTATAGGGCAACAGCagaaattttctttttttctttttttcgtAG
AGCGGAACTCGCCAAGCTGTGGAGAgtaagagaaggagggggcgaggggc
tAGATGACGTGACTTGTGAAACTGCTACTCGGAGGCGGTGGTAGATGGTG
GCACGATTTGGGTTGAGCGGGCCTAGGTCATACCAGCACTCCAAGATCGA
AGGGCGAAGCATCGAGTCAGCAACATCATCCCCGATGACGACCACAAGCA
TTAGAAGACACAGAATCAGCACGGCATCACTCTTGGCTATGGAGACGAAT
AGCACTCGTGATAGCTTGCGGACGCAGCAGCAAGACCAGCCCCATcatgc
gggaagaagaagacggacATCTGGATCCTATGCCGCCTGGGGCCTGGCAT
CGGCAGCCACGGCGGTCATGTACTTCGCCACAGTGGCTCACGGCTTCGTG
ACGCCGTTGACTTCCGCTCCCTTCAGGCAAGCAGAGGCGGGAAACGGCCT
TGTGTCGGGGAGCTTTGCGGGCAAACGTTCAGTCTGCGCTGGGCAGTCGG
CGACAagcctgggggcgggcgtgtTGAGCAAGCTCGACTTCAAGCCTGCC
GTGGATGTATACGCCAAGTTTCCCGAACCACCCAAGACGGCGGGCACAAG
CACGGGTACATCCACCTTGTCGCACGAGGAGGTGACGCTCTTGACCACCG
CGGCCTCCCAACCGAGCATCGTCATGTCCCTGGACGGCCCGGCGCCGAAT
GACGTGGACCCTTTCGCCCTGGTCAAGAAGGACCTGGCGCCCTTCTCGGA
CTCGatcaaggagctggtggagacGGAAAATCCGGTCCTGACGGCCGCGG
CGAAGCACTTCTTCGAGAAGAGGCACGGGAAGCGCTTCCGCCCGACCATT
GCTATGCTCATGTCGCGCGCCGtgcaggcaggcggggctATCGACCGGGA
CGTGGGTGGGGCCATGGCCACGCCTATGCCCGTCGTGGATCCGCTCCGCT
ATCAGCGCCAGTCCCAGCTGGCGCAGATCACGGAGATGATCCACGTGGCG
TCGCTCATCCACGACGAcgtcctggacgaggccgacACGCGACGGGGAGA
CCTGGCGGTCCACAAGCTCTACTCGAACAAGGTTGCGGTGTTGGCAGGGG
ACTACCTCCTGGCCCGCGCCTCCGTGCTGCTGGCGCGGTTGGAAAAtgtg
caggtggtggagatcaTGGCGAACGCCCTGGACGCCCTGGTGCAAGGGGA
GATCATGCAAGCCAAGTCCAGCGCCAAGGACCTGCTGGACCTGGGGCACT
ACCTGCGAAAGAGCTACTACAAAACAGCCTCCCTCATCTGTAACTCCTGC
TGCTCGGCCGCCTTGTTGGGGGGATACACGTACGGGTCGCCGACCACCGT
GGCGGCCGAGAAGTACGGCTACCACTTGGGCCTGGCGTACCAGGTGATCG
ACGACGTGCTGGACTTTACGGGGACGGCGGACGTGCTGGGCAAGCCGGCC
ATGGCCGACATGACGCTGGGGCTGGCGACGGCGCCGATCCTGtacgcggc
ggaggagaagaaggagctgAAACCCCTGATCAAGCGCCGCTTTaaggagc
agggggacgtGGAACAGACATACAAACTGGTCATGGGTACGGAGGGAGTG
GAACGCGCCTATCAACTGGCAGTGTTCCACGCCCAGCGAGCAGTGGATGC
GATcgcgtcttttcctccctctgagGCCAAGGACGGCCTGATAAAGCTCG
CGCACATGgcgccaGTTAGGATAGCTCGGCATACTACGACCTCTGTGTAT
TTTTATAGGGCAACAGCagaaattttctttttttctttttttcgtAGAGC
GGAACTCGCCAAGCTGTGGAGAgtaagagaaggagggggcgaggggctAG
ATGACGTGACTTGTGAAACTGCTACTCGGAGGCGGTGGTAG

Synonyms

Publications