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Properties
| Property Name | Value |
|---|
| Product | u2 small nuclear ribonucleoprotein a |
| Orig transcript id | gnl|cribi|Naga_100072g17.8024.mrna |
| Orig protein id | gnl|cribi|Naga_100072g17.8024 |
| Gene | RU2A |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:739918..742127 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4495 ID=rna4495|Name=rna4495|organism=Nannochloropsis gaditana|type=mRNA|length=4184bp
AAACAAGCGGTTCATATCACCAGGACAAATATTGCCTCGCTGCTGTGGTG
GACGCTGACAGCGCGCGAAGGATGGTAGAGCCATTGCGCTTGAAAGCAAG
CGGCTCCCATCTGGCAGGCCAGGAGGTCGACGGCGCAGTATCCATGTCCC
TCAGCCGCGCCTGGGCCGTCAAAAAAACACAAAGGGGAATTTACACGGGC
GGGAAGGTGGCATTGCTAGCACTGGAGGACACGGAGTTGCAGTCCCCGCC
GGAGGAGTATTTAGTTACCATGTACGGCTCGGACGTCGTTTTGTCTGACG
TTGAGAATGGACAGGTTGTGGCATTAATCAGCTGCGGCGAGGGAGAGGTA
CGTGAACTACAGATCATGTCTTTGTGACTTGGAATCACTTGTACGCACAC
GTCGAAGCCGGAGATTGTGATTTTCTCCCATGGCATGTTCCGGTCAAATC
GTGCTGCCAGAAAAACTTTAGAGGGGGCATTGGGTGTGAATGCTCGAAGT
CAATTCGGACGTTACTTAATCTATGTCCATACATAGTCTTTATTACCGCT
CAATTGGGGCAGTGTCCCCTCCTCTCTCCATCACACGCTTTATCAAACGT
CACTCAGCGACTTTGCCCCTTTTCTTACCCACGACGTCACCGTCATGTGC
TTATTTCAATCCAAGGGAAAAGAGGAAATCGTCGCCTTTGCCGCTCATCC
AAGCGGGCAAGAAATCGCCACCGCAAGCCGCAACCTGATGCTTCGCTACT
GGGACTGGCGCTCCCCGGCAGGTCCCGTCGAACCCTCCACTGCCCCACTT
TCCGGACGGTCCTTCCGCCCTCGGTGCATGCGCGCTTACAAAGCGCACGA
GACCCCTGTACTGGCCATGGAGTACGACAGCACGGGCACTTTGCTGGCGA
CTGGCGGCTCGGATCGGAGCGTCCAGGTCTGGGACGTTCCGGGAGGCTTT
TGCACGCACAACTTCCGCGGTCATACGGGCATCGTCACCTTGGTCGCCTT
TCACCCGGAGTCGGCACAGCGGGAGCTGCTATTCAGTGCCAGCGACGACT
GTACCGTGCGAGTATGGAGCCTGCGCGAAGGGGGGCGGGCCGGCCCGGGG
GGGGGGGGAGGCTGCTGTTTGCAGGTGCTGACCAATCACATGAGCACGGT
GACGGGCGTAGGCGTGAGTGAGGATGGCAACACGCTGTTAACGGCCGGGA
GGGACCAGATTGTGAGCGTGTGGGACCTGAGGCGAGCCTCCCCCAGCGCC
CCGGGCTCCACGACCGGCTCCTTCCGGGGGGCGGACCTGGTGACCCTGGT
CGAGACCGTGCCCGTGTACGAGGAGCTCGAGGGCCTGCTGGCCTTGACGG
AGGCGGAGGCGCAAGCCATGGGTGGGTTTGGGGCTTGGAAAGGGAGCGAG
TACGGGGGGCGGGCGACGGAGGCGGAGCTGGATAGCTTGCACGCGATGCG
GCATACAAAGCGGGGTGCCGGTCGCAAGGCGGGCGGGGGGGACAGGACGG
CGCCCCCCCCTCGGAAGGGGGTATTTGTCCTGGCGGGTGCCAAGGGCAAA
GTGCGCGTCTTCCAATATGAGCCCAAGACGGATCCGTTTGCGAAGGGCCT
GGTTGTCCGGTGTGTGGCGGAGCAAGCTCCCCGAGACACGTGCCCGCGTG
GCCTCTCCGGCATTTTGAGAGGAGGCCGCCGACGTCCCACCCAGCTCCTT
GCCGTGACTACGGACCACAACCTCCAGTGGCTCCGAGGCGGGGATTTGGC
GCCGTCCCGGGTGGTGGTCGGGTACAATGACCAGGTGATCGCGGTGAAAT
ACCTGCCGGGCCTGGGAGGCGGGAGGGATGGGAGGCGGGTGGTGGTGGCG
AGCAATAGCCCGCAGGTCCGCGTCTTCCGTTTGGACGACCTGAGTTGTGA
GTGTCTGCTGGAGGGGCAGCATACCGAGACGGTGCTGGCGGTGGACGTGA
GTCCAGACGGCCGGTGGGTGGTGACAGGAAGCAAGGATCGGTCTGTCTGC
TTGTGGCAGCTCGGACCCGCCGAGAGCCTGGAGGAAGGGCAGGACAGAGA
TAGCGAGTGTGTGGCGGGCCGCTGTGTCCGGCGCTACGAAGGGCACACCG
ATGCTGTGAGTGCGGTGGCCGTGGGGCGGAAAAAGGCGGCCTACCAGCTT
CTCGCGTCGGGGAAACCGGGGGGGGCAGCTGTGGCTTACTCAGCGGGTGC
CGACCGAACCTTGAAGCGTTGGCTCTTGGCTCCTCCTACCCCCAAGCCGG
CGAGACACCAGGATTTGCGACAGAAAGAGGCCAATGGCAAGGTCGAGGAG
CACGGTCAGGGAAAAGGGAGCGCAGGAGCTCCGTCTGTGCCGTCGACCAC
TGAGGCATCGGCGAGTGTGCTGGCCCATGATAAGGACATCAACGCGCTGG
CTGTGAGTCCGAACGACGCCTTGGTCGCCAGCGCCTCGCAGGACAAGACC
GTGAAGCTCTGGGAGGCTCGAGATCTGCGGGCGGTGGGGGTCTTGAAGGG
CCACAAGCGGGGCGTTTGGTGCGTCGAGTTCTCGCCTGTGGATCGCTGCG
TGGTAACGGGAAGCGGGGACAAGACCGTTCGTTTGTGGTCGTTAACGGAC
TTCTCCTGCCTGCGCTCTCTGGAGGGGCACACGGCCTCGGTGCTGGCCGC
CACCTTTCTGAGGAGCGGGCTGCAAGTCCTCTCGGCGGGGGCGGACGGAC
TGTTGAAGCTGTGGACGGTGCACACGCAGCAGTGCGAGGCGACCATGGAC
GGGCACGAGGAGCGGGTATGGGCCCTAGCCCTCTCCCCAGACGGACGTCA
GGCAGTGACTGGTGGTGGGGACTCGGCCGTGAATGTGTGGGAGGATGTCA
CGCTGGAGGAGGAGGAGCAGGCCCTGCGGGCGGCCGAGGCGATGGTGGAG
AAGGAACAGTCGCTGCAAAATGCGGTGTCTCGCAAAGATTACTTCAAGGC
TGTGCGCCTGGCTCTGGAGCTCGGCCGACCCTACCGGCTGCTGAAAGTCC
TCCAGGATATCCTCGAAGCCGCCCCCTCCGCTTCCACGGACACCCTTTCC
CTCTCCCCCACCTCGTCCCTCTCCATTGCCCTGGATCCCTACATCCTCCA
GTGGGGAGACGCGGACATCCTGCAGGTCCTGGGCTACGTCCGGGAATGGA
ATACGAACGCCAAGCACGCCATGATAGCTCAAACCATCCTGCACGCCCTC
CTCCGCTTGCTCCCGCATGCTCGTCTGAAGAAATGCTGCGCCTCCCAGCC
AAGTCTTCTGGGAGGCCTCCTTGCTTACACCGAAAGGCACCTGGCCAGGG
CAGATCGGCTGATTCAGGGGGCCTACCTGATTGACTACACCCTGAGCGGG
CTGCAGGTGCTATTTCCCTTCCCGGCTGAGGAAGCGAGCGAGGGGAAGGG
ACCAAGGCCGCAAACGCAGTCACTGGCGCTGCCGTCGACCCCTGGACCGG
AGGAGGGCATACAGAAGGAAAGCTGGGTCCCAGAAAGAAGGGAGGATGGG
AAGAAGGGCGAGAGCGAGGAGGATGCGGAGAGCACGTCCTCCTCCTCCTC
GTCCGCATCGGGGGAGGAAGGCGATGGGGAGGCGGAGGAGTTAAGCACGC
AAGCTACCTCGTCCTCTTCCCCCTCGCAGGCTGCGAAAGGGAAAGCCAAG
AATGCCAAGAAGAAGGCACCCCCGGCGGAGCAATCGACGCCGTCCGCTCG
ACCGCTGCGTGCCCCGAGGGAGGGATCAGGAAGGAGGCAGGGCGCTCAGA
CTCGAGTCGGAACAAGGGCCGTTGCGTCCATGGACACACCCACTCGTTCC
ACGTCGAGGGGCTCCCAAGTCCGGAGGCGCGGTCCTCAGGAAGTCGTTGA
GAAATCCGTGGAGCAAGGGAGGGAGAAGAGCGAGAGCCAAGGTGATGCAG
GGACTCGGGGAAAAAGGAAAGCGAACGGGAGTACCGGACAGGGTCGTGAC
AGAAAAAGGAAAATCAAAGTGTAAGGATTTTGGGGCTCATCAATTGACTG
ATGTGTGTAAAGCATCTTTTCAAAGTAAAGTAATGAAAAAAGTACCGAAA
TTGTCAGCCACTTGCGTCCCAAGAGACCATATGAACGATCCAAATCCGCA
TCCTCCTCCAAATCCAGGACCAAAGCAAGTCCAAGGCTCTGTATCAGGAC
ACTCTTGCGCGTTACCGACCCACATTGTTTGAAT back to topprotein sequence of rna4495 >rna4495-protein ID=rna4495-protein|Name=rna4495|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSD
NEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVA
SLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVK
ADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKR
LAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQ
MPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPA
PVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREA
SSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPP
PPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNG
LKAELMDRLRSHVVGS back to topmRNA from alignment at CM002463.1:739918..742127- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4495 ID=rna4495|Name=rna4495|organism=Nannochloropsis gaditana|type=mRNA|length=2210bp|location=Sequence derived from alignment at CM002463.1:739918..742127- (Nannochloropsis gaditana)
ACTTTTTAATGGTCCCATCAAGGAGAGTGAGCAGCTCGAATTAGAAGGCG
CTAGAAGCTCTTTTCTGGAGAGGTCAGGTAGCCGGTCTGGTGGCAGCTAA
GTCACGCCTTTTCTCCGGACGATGGGTTACTAGGTCTTTCAAACGTTTGA
TCTTGATGATGCATGGCATGCGGTGAAAACGGGGCTGTGTGTTTATCCGC
GGTAGCGAATACCTGAGACTCCAGAGATCATGGATGGTTGGGGCGCAGAA
GGAGGAGGAGGTCATCCCTTCTCCGCCGCACTGAGAAATGCTTTTATGTA
CTCACATCTCATTCCGTACATCCTACAGCCGCGCGAATACCATTGACGTG
GAACTACACGGGTGATAGACTCATGAGGATTACTGCCGACGTCGTTGTGG
TACGTCTGCTGCCGTTGGTCGGTATCGGGAAACCCAAGTCTTGCCCTTTT
GCTGCCCTCAGACTCCGCTTGCTTATTGTTTTTGCACGATTTGAGCTCAT
GACATCCCCTATCAACTACCTATCACTCACATTTACAGCATGCTCGTGCA
TTTGTCAACCCAGTGAAGGAGCGGGAGCTGGACTTACGGGGCCTGAAAAT
TCCTCTGATAGAAAACTTGGGCGTGACCCAAGATCAATTTGATACCGTCG
ATTTGAGCGACAATGAGATCAGGCGTCTGGACAATTTTCCACGCATGCGT
CGGCTCAAAACCCTCTTGCTATGTAATAACAGCATTGCGCGGTTTGGCTC
TGCCCTTGGTGAGCAGATCTCTGAGCTCGAAGCCTTGGTTCTCACCAACA
ACAAGGTCGCGAGCCTAAGCGAGATCGACCACCTGGCCTCTCTCACCAAG
CTCCGGCACCTCTCCTTGGTCGACAACCCTGTCGTTCGCTCCCTCCACTA
TCGATTATACATCCTGCACAAGCTGCCCCACCTGACCGTGCTTGACTTCC
AGAAGGTGAAAGCGGACGAGCGGAGAGCAGCCAAGAAGCTCTTTCAGTCC
CAGGCGGGCCAACAGCACCTCAGCGCTATCGCGGACGAGGGGAAGCTGCT
GGCCGCAGAGTCCGCTGGGAAGGTGCGTGAGAAGCGTGTGATGACGGAGG
AAGAGAAACGGCTGGCGCAGGCCATGATCGACAAGGCGACCACGCCGGAG
GAGCTCGAGCGCGTCGAGCGACAACTGCGTGCCGGGATATTCAAAGCCCC
GGGCCCCCCTCCACCAGGGCAACAGCACGCACAGCCGCAGGAGCAGGAGC
CACCGCCTCAAATGCCTCTGGTTGCCGAAAATGGGGCGTCCACAGAGAAA
TCAGGATCCGAGCAAGCTCTGCCCTCGGTTCCGGCCTCTGTTCCAGCCCC
CCCCGCCCCGGCAGTCGCTCCTATCCTACCTCCTTCACCACCAGTTACCT
CGGCTCCCGCTCCCGTATCCTCTCTTCCTCCTCCGCCTCCCGCCCCCATC
GCAGATGCGACATCCTCTGTGCTCCAAGCCCCTCCGATTCCCCCGCCCCC
AACCGTGTCCGCCCCCCCCGTCGACCCTACCACGGTGTCTGCCAAGCGGA
AACGCGAAGCAAGCAGTGGGGCGGCGGGAGAAGATGGACAGCAACCTGGA
AAGAGAGAGAAGGAAAGCAGGACGCAGGAGGCAGCCTCGGCGGGGGAAGC
CGTGCCCGCGACTCAATCGAAAGCCCATGCCGAGGCAGGTGCAGCCAACG
AAGCGCCGCCGCCGCCGGTCCCCGAGCCAGCGACGGAGGAGAAGACAGAG
GACGGAGGTGAAGGGGATCGTGAAGAGGTTTTGACGGTTGCAGGGGTGGA
AGCGATGAAAGTGGCGGAGCTGAAGGCAGCCCTGAAGGAGAGGGGATTGG
CCACGAACGGGCTCAAGGCCGAGCTGATGGATCGATTGCGGTCGCATGTG
GTGGGCTCTTGATCGGAGGGGGGATGAAATATCGGCATCGGGGGCGTCAA
ATCAGGGAGAAGCCAGGGTGGGAGCAGGGGAGCCAATCATAAAGAAGGTC
GCACCTTGGAGACGCGACTTTCCAACGAACGCCGTAAGTTGGACGAAGCA
ATTCATGCCGACGAAGCATTTCTAAAGTAATTTAATGGTAAAAGAAATTT
CAGAATTGTGCAACACTGTGAGTTGGAGACAGGCATTTTTCGAGTAAGCA
CGCTGAGATTCGAGAAGCGCTGCATCATTTACTTGATTCCTCTAAGTACC
TCGACTGACA back to topCoding sequence (CDS) from alignment at CM002463.1:739918..742127- >rna4495 ID=rna4495|Name=rna4495|organism=Nannochloropsis gaditana|type=CDS|length=2802bp|location=Sequence derived from alignment at CM002463.1:739918..742127- (Nannochloropsis gaditana)
CATGCTCGTGCATTTGTCAACCCAGTGAAGGAGCGGGAGCTGGACTTACG
GGGCCTGAAAATTCCTCTGATAGAAAACTTGGGCGTGACCCAAGATCAAT
TTGATACCGTCGATTTGAGCGACAATGAGATCAGGCGTCTGGACAATTTT
CCACGCATGCGTCGGCTCAAAACCCTCTTGCTATGTAATAACAGCATTGC
GCGGTTTGGCTCTGCCCTTGGTGAGCAGATCTCTGAGCTCGAAGCCTTGG
TTCTCACCAACAACAAGGTCGCGAGCCTAAGCGAGATCGACCACCTGGCC
TCTCTCACCAAGCTCCGGCACCTCTCCTTGGTCGACAACCCTGTCGTTCG
CTCCCTCCACTATCGATTATACATCCTGCACAAGCTGCCCCACCTGACCG
TGCTTGACTTCCAGAAGGTGAAAGCGGACGAGCGGAGAGCAGCCAAGAAG
CTCTTTCAGTCCCAGGCGGGCCAACAGCACCTCAGCGCTATCGCGGACGA
GGGGAAGCTGCTGGCCGCAGAGTCCGCTGGGAAGGTGCGTGAGAAGCGTG
TGATGACGGAGGAAGAGAAACGGCTGGCGCAGGCCATGATCGACAAGGCG
ACCACGCCGGAGGAGCTCGAGCGCGTCGAGCGACAACTGCGTGCCGGGAT
ATTCAAAGCCCCGGGCCCCCCTCCACCAGGGCAACAGCACGCACAGCCGC
AGGAGCAGGAGCCACCGCCTCAAATGCCTCTGGTTGCCGAAAATGGGGCG
TCCACAGAGAAATCAGGATCCGAGCAAGCTCTGCCCTCGGTTCCGGCCTC
TGTTCCAGCCCCCCCCGCCCCGGCAGTCGCTCCTATCCTACCTCCTTCAC
CACCAGTTACCTCGGCTCCCGCTCCCGTATCCTCTCTTCCTCCTCCGCCT
CCCGCCCCCATCGCAGATGCGACATCCTCTGTGCTCCAAGCCCCTCCGAT
TCCCCCGCCCCCAACCGTGTCCGCCCCCCCCGTCGACCCTACCACGGTGT
CTGCCAAGCGGAAACGCGAAGCAAGCAGTGGGGCGGCGGGAGAAGATGGA
CAGCAACCTGGAAAGAGAGAGAAGGAAAGCAGGACGCAGGAGGCAGCCTC
GGCGGGGGAAGCCGTGCCCGCGACTCAATCGAAAGCCCATGCCGAGGCAG
GTGCAGCCAACGAAGCGCCGCCGCCGCCGGTCCCCGAGCCAGCGACGGAG
GAGAAGACAGAGGACGGAGGTGAAGGGGATCGTGAAGAGGTTTTGACGGT
TGCAGGGGTGGAAGCGATGAAAGTGGCGGAGCTGAAGGCAGCCCTGAAGG
AGAGGGGATTGGCCACGAACGGGCTCAAGGCCGAGCTGATGGATCGATTG
CGGTCGCATGTGGTGGGCTCTTGAATGAGGATTACTGCCGACGTCGTTGT
GCATGCTCGTGCATTTGTCAACCCAGTGAAGGAGCGGGAGCTGGACTTAC
GGGGCCTGAAAATTCCTCTGATAGAAAACTTGGGCGTGACCCAAGATCAA
TTTGATACCGTCGATTTGAGCGACAATGAGATCAGGCGTCTGGACAATTT
TCCACGCATGCGTCGGCTCAAAACCCTCTTGCTATGTAATAACAGCATTG
CGCGGTTTGGCTCTGCCCTTGGTGAGCAGATCTCTGAGCTCGAAGCCTTG
GTTCTCACCAACAACAAGGTCGCGAGCCTAAGCGAGATCGACCACCTGGC
CTCTCTCACCAAGCTCCGGCACCTCTCCTTGGTCGACAACCCTGTCGTTC
GCTCCCTCCACTATCGATTATACATCCTGCACAAGCTGCCCCACCTGACC
GTGCTTGACTTCCAGAAGGTGAAAGCGGACGAGCGGAGAGCAGCCAAGAA
GCTCTTTCAGTCCCAGGCGGGCCAACAGCACCTCAGCGCTATCGCGGACG
AGGGGAAGCTGCTGGCCGCAGAGTCCGCTGGGAAGGTGCGTGAGAAGCGT
GTGATGACGGAGGAAGAGAAACGGCTGGCGCAGGCCATGATCGACAAGGC
GACCACGCCGGAGGAGCTCGAGCGCGTCGAGCGACAACTGCGTGCCGGGA
TATTCAAAGCCCCGGGCCCCCCTCCACCAGGGCAACAGCACGCACAGCCG
CAGGAGCAGGAGCCACCGCCTCAAATGCCTCTGGTTGCCGAAAATGGGGC
GTCCACAGAGAAATCAGGATCCGAGCAAGCTCTGCCCTCGGTTCCGGCCT
CTGTTCCAGCCCCCCCCGCCCCGGCAGTCGCTCCTATCCTACCTCCTTCA
CCACCAGTTACCTCGGCTCCCGCTCCCGTATCCTCTCTTCCTCCTCCGCC
TCCCGCCCCCATCGCAGATGCGACATCCTCTGTGCTCCAAGCCCCTCCGA
TTCCCCCGCCCCCAACCGTGTCCGCCCCCCCCGTCGACCCTACCACGGTG
TCTGCCAAGCGGAAACGCGAAGCAAGCAGTGGGGCGGCGGGAGAAGATGG
ACAGCAACCTGGAAAGAGAGAGAAGGAAAGCAGGACGCAGGAGGCAGCCT
CGGCGGGGGAAGCCGTGCCCGCGACTCAATCGAAAGCCCATGCCGAGGCA
GGTGCAGCCAACGAAGCGCCGCCGCCGCCGGTCCCCGAGCCAGCGACGGA
GGAGAAGACAGAGGACGGAGGTGAAGGGGATCGTGAAGAGGTTTTGACGG
TTGCAGGGGTGGAAGCGATGAAAGTGGCGGAGCTGAAGGCAGCCCTGAAG
GAGAGGGGATTGGCCACGAACGGGCTCAAGGCCGAGCTGATGGATCGATT
GCGGTCGCATGTGGTGGGCTCTTGAATGAGGATTACTGCCGACGTCGTTG
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