EWM26191.1, cds4484 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|585108188|gb|EWM26191.1| (u2 small nuclear ribonucleoprotein a [Nannochloropsis gaditana]) HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0 Identity = 466/466 (100.00%), Postives = 466/466 (100.00%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQMPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPAPVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVGS 466
MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQMPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPAPVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVGS
Sbjct: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQMPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPAPVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVGS 466
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|299117219|emb|CBN75181.1| (U2 small nuclear ribonucleoprotein A [Ectocarpus siliculosus]) HSP 1 Score: 238.81 bits (608), Expect = 6.255e-70 Identity = 112/228 (49.12%), Postives = 160/228 (70.18%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGK-VREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIF 227
MR+TAD+++HARA +NP ERELDLRG KIP+IENLGVTQDQFD +D SDNEI++LDNFPR +RL +LLLCNN +++ LG + L L+LTNNK+++L+E+ L + TKL LSL+ N VV +YRLY+++ +P L LDFQKV ER +A +L +SQAGQ + +A + + + G E++ +T+E + + I KATT EE+E + ++++AGI
Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGII 228
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1022768162|gb|KZS12980.1| (U2 small nuclear ribonucleoprotein A' [Daphnia magna]) HSP 1 Score: 223.016 bits (567), Expect = 1.918e-66 Identity = 115/238 (48.32%), Postives = 157/238 (65.97%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQ 238
+++TA+V+ + + N +KERELDLRG KIP+IENLG T DQFDT+D SDN+IR+LD FP +RR+K+LLL NN I R LGE I LE LVLTNN + L ++D LA +KL +LSL+ NPV HYR Y+++KLP L VLDF+KVK ER AA+ LF+S+ G+ IA + K L+AE K EE + + +A+ + A+T EE+ER+ + LRAG+ P +
Sbjct: 2 VKLTAEVIHLSHQYTNAIKERELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIAEGLGEVIPNLETLVLTNNHIQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLKEREAARDLFKSKKGKVLAKEIAQKSKFLSAEMGNKAPIGGASAEEARAIREAVAN-ASTLEEVERLNQMLRAGVVPGKATKSPSKN 238
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|321460280|gb|EFX71324.1| (hypothetical protein DAPPUDRAFT_60299 [Daphnia pulex]) HSP 1 Score: 222.246 bits (565), Expect = 3.895e-66 Identity = 116/236 (49.15%), Postives = 156/236 (66.10%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPG 236
+++TA+V+ + + N +KERELDLRG KIP+IENLG T DQFDT+D SDN+IR+LD FP +RR+K+LLL NN I R LGE I LE LVLTNN + L ++D LA +KL +LSL+ NPV HYR Y+++KLP L VLDF+KVK ER AA+ LF+S+ G+ IA + K L+AE+ K + E R + + A+T EE+ER+ + LRAG+ PG G
Sbjct: 2 VKLTAEVIHLSHQYTNAIKERELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIADGLGEVIPNLETLVLTNNHLQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLKEREAARDLFKSKKGKVLAKEIAQKSKFLSAEAGNKAPIGK--NTNEARAIREAVANASTLEEVERLNQMLRAGV--VPGKATQG 233
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1080067146|ref|XP_018575812.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Anoplophora glabripennis]) HSP 1 Score: 219.164 bits (557), Expect = 4.861e-65 Identity = 110/240 (45.83%), Postives = 163/240 (67.92%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLA-AESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQH 239
+++TA+++ ++ ++NPVK+RELDLRG +IP IENLG T DQFDTVD SDN+IR+LD FP ++RLK LLL NN I R G L E I LE+L+LT N++A L +ID L SL KL LSL+ NPV HYRLY++++LP L +LDF+K+K ER A+ LF+S+ G++ I+ K + + + +++EE R + I+KA++ EE+ER+++ L++G + PG G+Q
Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTVDFSDNDIRKLDGFPYLKRLKCLLLNNNRIVRIGEHLEEYIPNLESLILTGNQIADLGDIDPLVSLEKLTTLSLMHNPVTAKQHYRLYVIYRLPQLKLLDFRKIKLKERDEARTLFKSKKGKEMQKEISKRAKTFVPGGGINNIAKNKGLSDEEVRKIRDAINKASSLEEVERLQKILQSG--QIPGNDINGKQQ 239
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1173886320|gb|OQR68589.1| (U2 small nuclear ribonucleoprotein A'-like [Tropilaelaps mercedesae]) HSP 1 Score: 212.231 bits (539), Expect = 2.891e-62 Identity = 107/230 (46.52%), Postives = 156/230 (67.83%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIA-----DEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAG 225
+R+T D+V +A ++NPVKERELDLRG +I IENLG T DQFDT+D SDN+IR+L+ FP ++R+K+LLL NN I R L E + LE+LVLTNN++ +L ++D LA++ LRHLS++ NPV HYRLYI+HK+P L +LDF+++K ER A+KLF+ + G+ + I ++ K K+ MT E+++ + I KATT +E+ER+ + LR+G
Sbjct: 2 VRLTVDIVENAAQYINPVKERELDLRGYRISEIENLGATLDQFDTIDFSDNDIRKLEGFPFLKRIKSLLLNNNRICRIMENLEEHLPALESLVLTNNQIQNLGDLDPLATVKTLRHLSVLKNPVALKKHYRLYIVHKVPQLRILDFKRIKMAERDEARKLFKGKKGKALVKEIGLKSAPEKAKTFMPGEPAKLENTFAMTVEDQQAIKEAIGKATTLDEVERLTQMLRSG 231
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1139853563|ref|XP_011421422.2| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Crassostrea gigas]) HSP 1 Score: 208.764 bits (530), Expect = 6.407e-61 Identity = 108/232 (46.55%), Postives = 155/232 (66.81%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVM-TEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPG 231
+++TA+++ + + NPV++RELDLRG KIP+IEN+G T DQFDT+DLSDN+IR+ D FP + RLKT+LL NN + R G L E + LE+LVL+NN + L ++D L++L L+HLSL+ NPV HYRLYI+HK+P L VLDFQ+++ ER AA K+F+ + GQ S I K K+ EK+ ++E+ L + I KA T E+ER+ + L+ G+ PG
Sbjct: 2 VKLTAELIEQSAQYTNPVRDRELDLRGYKIPVIENMGATLDQFDTIDLSDNDIRKFDGFPILLRLKTVLLNNNRVVRIGEDLHECLPNLESLVLSNNSMTELGDLDPLSNLKSLQHLSLLRNPVQSKKHYRLYIVHKIPQLRVLDFQRIRQKEREAAAKMFKGKKGQALASDIGKRSKTFVP--GEKIPEKKTGPSKEDIELIKMAIAKAKTLNEVERLNQMLKTGVI--PG 229
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|642935432|ref|XP_971653.2| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Tribolium castaneum] >gi|1004396019|gb|EFA10336.2| putative U2 small nuclear ribonucleoprotein A'-like Protein [Tribolium castaneum]) HSP 1 Score: 208.379 bits (529), Expect = 7.031e-61 Identity = 107/248 (43.15%), Postives = 161/248 (64.92%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGK-VREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPP-PGQQHAQPQEQE 246
+++TA+++ ++ ++NPVK+RELDLRG +IP +ENLG T DQFDT+D SDN++R+LD FP ++RLK LL NN I R G L E I LE L+LT N + L +I+ L +L KL +SL+ NP+ HYRLY+++KLP L +LDF+KV A ER A+ LF+S+ G++ I K G + + + +T+EE + I+KA++ EE+ER+++ L++G + PG G Q+ Q E E
Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEVENLGATGDQFDTIDFSDNDVRKLDGFPYLKRLKCLLFNNNRIVRIGEHLEEYIPNLETLILTGNHLEELGDIEPLCTLEKLTTVSLLHNPITSKQHYRLYLIYKLPQLRLLDFRKVTAKEREEARALFKSKKGKEIRKEIGKRAKTFIPGGTGNSIAKSKGLTDEEIAKIREAINKASSLEEVERLQKILQSG--QIPGQEEMNGYQNGQSMEYE 247
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|961374678|gb|ALS04083.1| (U2 small nuclear ribonucleoprotein A [Acartia pacifica]) HSP 1 Score: 207.994 bits (528), Expect = 1.172e-60 Identity = 112/259 (43.24%), Postives = 155/259 (59.85%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLL-------------AAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQE 246
++ T D++ A ++NPV++RELDLRG KIP+IENLG T DQFD +DLSDNE+R+LD FP++ RLKTLLL NN I R L + L LV+TNN + L++++ L ++ KL +SL+ NPVV +YRLY++HK P L VLDF+K+K ER AAK LF+++ G+ L I + K AA AG +T E+ + + MI KA + EE+ER+ + LR G G Q A E E
Sbjct: 2 VKCTPDLIEGAGQYINPVRDRELDLRGYKIPVIENLGSTLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDIQAKAKTFVPGAPLPEATNNKAANPAG-------LTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGGDQTADGGETE 253
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|919086412|ref|XP_013380350.1| (PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Lingula anatina]) HSP 1 Score: 207.608 bits (527), Expect = 1.301e-60 Identity = 110/235 (46.81%), Postives = 156/235 (66.38%), Query Frame = 0
Query: 1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVM----TEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPG 231
+++TAD++ A + NPV++RELDLRG KIP+IENLG + DQFDT+DLSDNEIR+LD FP ++RLK+LL+ NN +AR L E + LE+L+LTNN + L ++D LAS+ LR LSL+ NPV HYRLY++HKLP + +LDFQKV+ ER AA ++F+ + GQ I K G++ E ++E+ +A I +A+T EE+ER+ + LR G + PG
Sbjct: 2 VKLTADLIEQAAQYTNPVRDRELDLRGYKIPVIENLGASLDQFDTIDLSDNEIRKLDGFPLLKRLKSLLVNNNRVARIAEDLEECLPSLESLILTNNSIQELGDLDTLASVKTLRTLSLMRNPVTTKKHYRLYVIHKLPQIRLLDFQKVRLREREAAGRMFKGKRGQALAKEIGKRSKTFVP--GGQLPEVTKKPTGPSKEDVDAIKAAIARASTLEEVERLNQMLRTG--QIPG 232 The following BLAST results are available for this feature:
BLAST of EWM26191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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