EWM26191.1, cds4484 (CDS) Nannochloropsis gaditana

Overview
NameEWM26191.1
Unique Namecds4484
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:741729..741755 -
Alignment locationCM002463.1:740216..741589 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26191.1
Productu2 small nuclear ribonucleoprotein a
Orig transcript idgnl|cribi|Naga_100072g17.8024.mrna
GeneRU2A
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:741729..741755 -
CM002463.1supercontigCM002463.1:740216..741589 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR003034SAP_dom
Homology
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|585108188|gb|EWM26191.1| (u2 small nuclear ribonucleoprotein a [Nannochloropsis gaditana])

HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0
Identity = 466/466 (100.00%), Postives = 466/466 (100.00%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQMPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPAPVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVGS 466
            MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQMPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPAPVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVGS
Sbjct:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEPPPQMPLVAENGASTEKSGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAPAPVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVGS 466          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|299117219|emb|CBN75181.1| (U2 small nuclear ribonucleoprotein A [Ectocarpus siliculosus])

HSP 1 Score: 238.81 bits (608), Expect = 6.255e-70
Identity = 112/228 (49.12%), Postives = 160/228 (70.18%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGK-VREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIF 227
            MR+TAD+++HARA +NP  ERELDLRG KIP+IENLGVTQDQFD +D SDNEI++LDNFPR +RL +LLLCNN +++    LG  +  L  L+LTNNK+++L+E+  L + TKL  LSL+ N VV   +YRLY+++ +P L  LDFQKV   ER +A +L +SQAGQ  +  +A + +     + G    E++ +T+E + +    I KATT EE+E + ++++AGI 
Sbjct:    1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGII 228          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1022768162|gb|KZS12980.1| (U2 small nuclear ribonucleoprotein A' [Daphnia magna])

HSP 1 Score: 223.016 bits (567), Expect = 1.918e-66
Identity = 115/238 (48.32%), Postives = 157/238 (65.97%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQ 238
            +++TA+V+  +  + N +KERELDLRG KIP+IENLG T DQFDT+D SDN+IR+LD FP +RR+K+LLL NN I R    LGE I  LE LVLTNN +  L ++D LA  +KL +LSL+ NPV    HYR Y+++KLP L VLDF+KVK  ER AA+ LF+S+ G+     IA + K L+AE   K        EE + + +A+ + A+T EE+ER+ + LRAG+        P + 
Sbjct:    2 VKLTAEVIHLSHQYTNAIKERELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIAEGLGEVIPNLETLVLTNNHIQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLKEREAARDLFKSKKGKVLAKEIAQKSKFLSAEMGNKAPIGGASAEEARAIREAVAN-ASTLEEVERLNQMLRAGVVPGKATKSPSKN 238          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|321460280|gb|EFX71324.1| (hypothetical protein DAPPUDRAFT_60299 [Daphnia pulex])

HSP 1 Score: 222.246 bits (565), Expect = 3.895e-66
Identity = 116/236 (49.15%), Postives = 156/236 (66.10%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPG 236
            +++TA+V+  +  + N +KERELDLRG KIP+IENLG T DQFDT+D SDN+IR+LD FP +RR+K+LLL NN I R    LGE I  LE LVLTNN +  L ++D LA  +KL +LSL+ NPV    HYR Y+++KLP L VLDF+KVK  ER AA+ LF+S+ G+     IA + K L+AE+  K    +     E R  +  +  A+T EE+ER+ + LRAG+   PG    G
Sbjct:    2 VKLTAEVIHLSHQYTNAIKERELDLRGYKIPVIENLGATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIADGLGEVIPNLETLVLTNNHLQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLKEREAARDLFKSKKGKVLAKEIAQKSKFLSAEAGNKAPIGK--NTNEARAIREAVANASTLEEVERLNQMLRAGV--VPGKATQG 233          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1080067146|ref|XP_018575812.1| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Anoplophora glabripennis])

HSP 1 Score: 219.164 bits (557), Expect = 4.861e-65
Identity = 110/240 (45.83%), Postives = 163/240 (67.92%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLA-AESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQH 239
            +++TA+++ ++  ++NPVK+RELDLRG +IP IENLG T DQFDTVD SDN+IR+LD FP ++RLK LLL NN I R G  L E I  LE+L+LT N++A L +ID L SL KL  LSL+ NPV    HYRLY++++LP L +LDF+K+K  ER  A+ LF+S+ G++    I+   K          + + + +++EE R  +  I+KA++ EE+ER+++ L++G  + PG    G+Q 
Sbjct:    2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEIENLGATGDQFDTVDFSDNDIRKLDGFPYLKRLKCLLLNNNRIVRIGEHLEEYIPNLESLILTGNQIADLGDIDPLVSLEKLTTLSLMHNPVTAKQHYRLYVIYRLPQLKLLDFRKIKLKERDEARTLFKSKKGKEMQKEISKRAKTFVPGGGINNIAKNKGLSDEEVRKIRDAINKASSLEEVERLQKILQSG--QIPGNDINGKQQ 239          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1173886320|gb|OQR68589.1| (U2 small nuclear ribonucleoprotein A'-like [Tropilaelaps mercedesae])

HSP 1 Score: 212.231 bits (539), Expect = 2.891e-62
Identity = 107/230 (46.52%), Postives = 156/230 (67.83%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIA-----DEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAG 225
            +R+T D+V +A  ++NPVKERELDLRG +I  IENLG T DQFDT+D SDN+IR+L+ FP ++R+K+LLL NN I R    L E +  LE+LVLTNN++ +L ++D LA++  LRHLS++ NPV    HYRLYI+HK+P L +LDF+++K  ER  A+KLF+ + G+  +  I      ++ K        K+     MT E+++  +  I KATT +E+ER+ + LR+G
Sbjct:    2 VRLTVDIVENAAQYINPVKERELDLRGYRISEIENLGATLDQFDTIDFSDNDIRKLEGFPFLKRIKSLLLNNNRICRIMENLEEHLPALESLVLTNNQIQNLGDLDPLATVKTLRHLSVLKNPVALKKHYRLYIVHKVPQLRILDFKRIKMAERDEARKLFKGKKGKALVKEIGLKSAPEKAKTFMPGEPAKLENTFAMTVEDQQAIKEAIGKATTLDEVERLTQMLRSG 231          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|1139853563|ref|XP_011421422.2| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Crassostrea gigas])

HSP 1 Score: 208.764 bits (530), Expect = 6.407e-61
Identity = 108/232 (46.55%), Postives = 155/232 (66.81%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVM-TEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPG 231
            +++TA+++  +  + NPV++RELDLRG KIP+IEN+G T DQFDT+DLSDN+IR+ D FP + RLKT+LL NN + R G  L E +  LE+LVL+NN +  L ++D L++L  L+HLSL+ NPV    HYRLYI+HK+P L VLDFQ+++  ER AA K+F+ + GQ   S I    K        K+ EK+   ++E+  L +  I KA T  E+ER+ + L+ G+   PG
Sbjct:    2 VKLTAELIEQSAQYTNPVRDRELDLRGYKIPVIENMGATLDQFDTIDLSDNDIRKFDGFPILLRLKTVLLNNNRVVRIGEDLHECLPNLESLVLSNNSMTELGDLDPLSNLKSLQHLSLLRNPVQSKKHYRLYIVHKIPQLRVLDFQRIRQKEREAAAKMFKGKKGQALASDIGKRSKTFVP--GEKIPEKKTGPSKEDIELIKMAIAKAKTLNEVERLNQMLKTGVI--PG 229          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|642935432|ref|XP_971653.2| (PREDICTED: U2 small nuclear ribonucleoprotein A' [Tribolium castaneum] >gi|1004396019|gb|EFA10336.2| putative U2 small nuclear ribonucleoprotein A'-like Protein [Tribolium castaneum])

HSP 1 Score: 208.379 bits (529), Expect = 7.031e-61
Identity = 107/248 (43.15%), Postives = 161/248 (64.92%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGK-VREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPP-PGQQHAQPQEQE 246
            +++TA+++ ++  ++NPVK+RELDLRG +IP +ENLG T DQFDT+D SDN++R+LD FP ++RLK LL  NN I R G  L E I  LE L+LT N +  L +I+ L +L KL  +SL+ NP+    HYRLY+++KLP L +LDF+KV A ER  A+ LF+S+ G++    I    K       G  + + + +T+EE    +  I+KA++ EE+ER+++ L++G  + PG     G Q+ Q  E E
Sbjct:    2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEVENLGATGDQFDTIDFSDNDVRKLDGFPYLKRLKCLLFNNNRIVRIGEHLEEYIPNLETLILTGNHLEELGDIEPLCTLEKLTTVSLLHNPITSKQHYRLYLIYKLPQLRLLDFRKVTAKEREEARALFKSKKGKEIRKEIGKRAKTFIPGGTGNSIAKSKGLTDEEIAKIREAINKASSLEEVERLQKILQSG--QIPGQEEMNGYQNGQSMEYE 247          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|961374678|gb|ALS04083.1| (U2 small nuclear ribonucleoprotein A [Acartia pacifica])

HSP 1 Score: 207.994 bits (528), Expect = 1.172e-60
Identity = 112/259 (43.24%), Postives = 155/259 (59.85%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLL-------------AAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQE 246
            ++ T D++  A  ++NPV++RELDLRG KIP+IENLG T DQFD +DLSDNE+R+LD FP++ RLKTLLL NN I R    L   +  L  LV+TNN +  L++++ L ++ KL  +SL+ NPVV   +YRLY++HK P L VLDF+K+K  ER AAK LF+++ G+  L  I  + K               AA  AG       +T E+ +  + MI KA + EE+ER+ + LR G          G Q A   E E
Sbjct:    2 VKCTPDLIEGAGQYINPVRDRELDLRGYKIPVIENLGSTLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDIQAKAKTFVPGAPLPEATNNKAANPAG-------LTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGGDQTADGGETE 253          
BLAST of EWM26191.1 vs. NCBI_GenBank
Match: gi|919086412|ref|XP_013380350.1| (PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Lingula anatina])

HSP 1 Score: 207.608 bits (527), Expect = 1.301e-60
Identity = 110/235 (46.81%), Postives = 156/235 (66.38%), Query Frame = 0
Query:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVM----TEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPG 231
            +++TAD++  A  + NPV++RELDLRG KIP+IENLG + DQFDT+DLSDNEIR+LD FP ++RLK+LL+ NN +AR    L E +  LE+L+LTNN +  L ++D LAS+  LR LSL+ NPV    HYRLY++HKLP + +LDFQKV+  ER AA ++F+ + GQ     I    K       G++ E        ++E+    +A I +A+T EE+ER+ + LR G  + PG
Sbjct:    2 VKLTADLIEQAAQYTNPVRDRELDLRGYKIPVIENLGASLDQFDTIDLSDNEIRKLDGFPLLKRLKSLLVNNNRVARIAEDLEECLPSLESLILTNNSIQELGDLDTLASVKTLRTLSLMRNPVTTKKHYRLYVIHKLPQIRLLDFQKVRLREREAAGRMFKGKRGQALAKEIGKRSKTFVP--GGQLPEVTKKPTGPSKEDVDAIKAAIARASTLEEVERLNQMLRTG--QIPG 232          
The following BLAST results are available for this feature:
BLAST of EWM26191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108188|gb|EWM26191.1|0.000e+0100.00u2 small nuclear ribonucleoprotein a [Nannochlorop... [more]
gi|299117219|emb|CBN75181.1|6.255e-7049.12U2 small nuclear ribonucleoprotein A [Ectocarpus s... [more]
gi|1022768162|gb|KZS12980.1|1.918e-6648.32U2 small nuclear ribonucleoprotein A' [Daphnia mag... [more]
gi|321460280|gb|EFX71324.1|3.895e-6649.15hypothetical protein DAPPUDRAFT_60299 [Daphnia pul... [more]
gi|1080067146|ref|XP_018575812.1|4.861e-6545.83PREDICTED: U2 small nuclear ribonucleoprotein A' [... [more]
gi|1173886320|gb|OQR68589.1|2.891e-6246.52U2 small nuclear ribonucleoprotein A'-like [Tropil... [more]
gi|1139853563|ref|XP_011421422.2|6.407e-6146.55PREDICTED: U2 small nuclear ribonucleoprotein A' [... [more]
gi|642935432|ref|XP_971653.2|7.031e-6143.15PREDICTED: U2 small nuclear ribonucleoprotein A' [... [more]
gi|961374678|gb|ALS04083.1|1.172e-6043.24U2 small nuclear ribonucleoprotein A [Acartia paci... [more]
gi|919086412|ref|XP_013380350.1|1.301e-6046.81PREDICTED: U2 small nuclear ribonucleoprotein A'-l... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4495rna4495Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications