rna449, rna449 (mRNA) Nannochloropsis gaditana

Overview
Namerna449
Unique Namerna449
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2517
Alignment locationCM002455.1:1120280..1120933 -

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Properties
Property NameValue
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100003g32.1831.mrna
Orig protein idgnl|cribi|Naga_100003g32.1831
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1120280..1120933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g32gene433Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30314.1cds449Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna449rna449-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna449 ID=rna449|Name=rna449|organism=Nannochloropsis gaditana|type=mRNA|length=2517bp
ATGGGAATCAATACACAGAGTGAAAGTGAGTTCTTGGCAATTAGGCAACG
ATATTTTCCATTGATCCAATCAAAATGCATCACCCTATCATCGGCAAGAT
CCCACGATCAGACTTTTGAAAACCTGGAAGAGTGTCATAGCTTCGAGATG
CACATTGATCTGTACAATTTACAAGTGCTGAGTCAAGAAGTCATGGCGTC
GTCAAATTGTCCTGGGCCTGCGATCTCTCATGTTGTAAGGATCGGGGACC
ACGCTAGAGAAAACCAAAATAGCCATTGTAGCGTTCGTAGTGGCCTTACT
GAGAGCGGCGACGATCAAGCCAGAAATGACCACGGTAACGGTGTCGACTC
CTTTACTCCTCTAAATCGGGAACCCAGCTACTGGAGCATCAGCGACATGA
CATTCACGCCTCATGTTGAGGAGGAAAGTAAGGCAGTTTTAAGTTGGAAG
CACTTGACAGTTCGAAGCAAGCGATCACCCGAAAAGGCCTTGTTGAAAGA
TCTCTCGGGAAACATAACCGGAGGTTTCTGGAGCTTGATGGGCCCGAGCG
GTAGTGGTAAATCCACGCTTGTCAACACCTTGGCATGTCGTTTGACACCT
GGGATGTGGTTTGAAGGAGAGATTCGTCTGAATGGGCGCATGTACTGCCT
GCATGATCTGAAGTGCATGTCAGGGTACGTAATGCAGGACGATCTCATGA
ATGGTGCTCTGACTGTATGGGAGACCTTGTTCTATGCAGGCGAGCTCCGG
CTACCGCACGATATGACGGTGGAGCATCGGCGAGAAAGGGTCGAAGAGTC
GATCGTTGAAATGGGTATTGGCCACGTTCGGGATGTTGTGGTGGGCGACT
CATTGCATAAGGGTATCTCGGGTGGAGAACGTAAACGCCTGGCTGTGGCG
ATGGAATTAATAACACATCCGGTTCTTCTCTTTCTCGACGAGCCCACCAG
TGGCCTGGATTCCGTCACGGCGCTCTCTCTCTGTTCGAAGCTGAAGTCAT
TGGCCGCCTCGGGGCGTACGACCGTCATATGCACCATCCACCAGCCTCAA
TCCAAGCTCTTCGCGCTCTTCGACAACCTGATCCTCCTCAAGGCGGGAGA
AATTGTGTATTTGGGGCCGGCCGGGAAAGCTGTGAGCTTTTTTGAAAAAG
CGGGGTTCCCCTGTCCTCCCATGACCAATCCTGCCGACCACTTGATGGAC
GTCATCACACCCGAGCTTGGGGAGGATGCAGACATCGCCAAGGCAAAAGG
AGATCGGCTCAAAAAGTACTTCACACCGAAGGTCGTTGACCTTCACGCGG
GGTCGGACAGACCCGCCATGCCAATGCGACAGATGATCCCCTGGCCTAAG
CAGTTCCACGTTCTCTTCCGCCGGTCCCTCCAAGAGCACAGGCGCAAATG
GGTGCAAGTCGCTACTCAGATCCTTAATTCGATTCTTATGAGCATTTTGA
TAGGCTTTGTCTTCTACAGAATTGGCGACAGCCAGGCCTCGATAAGTGTG
CGACAGGCGGTCTTGTTTTTCTGTGTGATTAACCAAGGCATCTTTGCTTC
GCTCGAAACGATCAATTCTTTCCCCAGTGAACGTGCTCTGACCTTGCGGG
AGCGGGCAGCGGGGACGTACAATGTCTCGGCTTACTTTCTCGCCAAGACG
GCAACGGACACGCTTTTTCAGCTCCTCCCACCCGTGGTCTTCAGCGCCAT
CGTTTATCACCTCGTTGGCTTGCAGGACACTCCCGAGAAGTTTTGGGTCT
TTACTGGCTTCATGATCCTCTGCCAGCTCAGCGCCACCTCTTTGGCGACG
ATGGTGTCGTGCGTAGCGCGAACGACGGACCTGAGTGTGGTCGTGTTGCC
GCTCTTCATCGAGATCGGACGTCTCTTCGGCGGGTATTTCCTGCCTCCCG
CCCAGCTTCCTTTGTACTTTTCCTGGCTATACGCCCTGTCCTACGTAAAA
TACACGTACGTGGGCATTGCTCAAAACGAGCTGAGTGGTTTAAAATTCAC
ATGCTTACCGTCAGAGCTGGTCGACGCGGCCTGTCCCATCAGCAGCGGGA
AGGAAGTCATCGAACGGCTGGGCCTGGACTTTATAACTCGAGATCAAGCG
GCAGGCATCTTAATACTGCTCGTCGTCATCTGCCGTGAGGAAATACTCTT
GAATGACTCAGGTTGCTCCACCGAACGAAAGAAAGCCTTCATCGTCGAAT
GCTGGCATAACATAAGGCACATGCTACAATATGGCCATGTCGTGCTCCTC
CACTGGATGGGGCGGATAGAATACACGGGAGGCTTCGGCAGACTACCATC
CTACATGAACAATGGTCGATTTAGGATAATTAATTGGAGAAAGAAGTGTA
AACGTAAGGAAAACATATTTGCCTACATCGATCGGCTTTGCACACTGTAT
TTAGATATGGACAGAATTCAAAGAAAAAAGATTGAGATTGATTGCATGTC
TAGAACATGTGATGTACCTGACCAGCAACAAACACGCGTACAGACAGGGC
CGAAGGGAAAGCAATGA
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protein sequence of rna449

>rna449-protein ID=rna449-protein|Name=rna449|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLRE
EFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI
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mRNA from alignment at CM002455.1:1120280..1120933-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna449 ID=rna449|Name=rna449|organism=Nannochloropsis gaditana|type=mRNA|length=654bp|location=Sequence derived from alignment at CM002455.1:1120280..1120933- (Nannochloropsis gaditana)
TCGATTTCAGGCACTACCCAATGCGAACACCACCCTCACTTCATTACTTG
ACATAGCAGGCGTAGATTGCACGGATCCGGAAGCAGGTGTTGCAAAAGCA
CTCTAGCCTGTCGAGCAGCAGCCCATTAAAGCACGTAAAGAAGCTGCCTA
CCCTTCATTGGAAAAAGGGTAGGAGGTCAAGAAAAAGTAATCCACTCGAG
TTGCTTCTCGGGACTTTTTGCTAGTCAATTTTTCGGCAGACTTTTCTTGC
GACTGAGGGATAGCTATAGTGCAAAGGTGTACAAGAACTGACATCAATAC
TTCATGAATGTCGGGGGCCTCAGCGCATTTCGTCGCTTGAGCACGATCGC
ATCAGGAGGACAGGCCTTGCAGCTATATCGCGCGATCTGGAGAGCCTCCC
GGGGTATGCCTACGATACGTCGGAAGAAATTTGTTCGCGATAAGCTACGA
GAGGAGTTTGAGGCAGCTAGACACGAGACAGACCCAAGTAAAGTCGCCTT
TGCCTTGGAATACGCCGCCCTTCAGCTTGACACCGTGAGAATCCAAGCGG
CTTCCTTGTCCAAGCTAGTCTGTGATCCAATGTACCACAACAAGCGCGAA
ATTTGATAAAAGAAAATTATTGGAAAGAATTCAGGCTTCATACTTTACAT
TACG
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Coding sequence (CDS) from alignment at CM002455.1:1120280..1120933-

>rna449 ID=rna449|Name=rna449|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002455.1:1120280..1120933- (Nannochloropsis gaditana)
ATGAATGTCGGGGGCCTCAGCGCATTTCGTCGCTTGAGCACGATCGCATC
AGGAGGACAGGCCTTGCAGCTATATCGCGCGATCTGGAGAGCCTCCCGGG
GTATGCCTACGATACGTCGGAAGAAATTTGTTCGCGATAAGCTACGAGAG
GAGTTTGAGGCAGCTAGACACGAGACAGACCCAAGTAAAGTCGCCTTTGC
CTTGGAATACGCCGCCCTTCAGCTTGACACCGTGAGAATCCAAGCGGCTT
CCTTGTCCAAGCTAGTCTGTGATCCAATGTACCACAACAAGCGCGAAATT
TGA
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Synonyms
Publications