EWM30314.1, cds449 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|553194170|ref|XP_005855897.1| (hypothetical protein NGA_2065400 [Nannochloropsis gaditana CCMP526] >gi|422293160|gb|EKU20460.1| hypothetical protein NGA_2065400 [Nannochloropsis gaditana CCMP526] >gi|585112973|gb|EWM30314.1| Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 207.608 bits (527), Expect = 5.225e-68 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 Query: 1 MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI 100 MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI Sbjct: 1 MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI 100
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|1173927996|gb|OQR81731.1| (hypothetical protein THRCLA_23308 [Thraustotheca clavata]) HSP 1 Score: 85.8853 bits (211), Expect = 4.096e-20 Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 17 SGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHN 96 S QAL YRAI+RA+ MP+ RK+FVR +LR E+E RHE +P ++ F L+ A QLDT++IQ A ++ DP YH Sbjct: 2 SRSQALSYYRAIYRAAGDMPSKDRKQFVRQRLRVEYEKYRHEINPERIEFLLKVADTQLDTLKIQVAHFKNILSDPQYHQ 81
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|698782959|ref|XP_009824523.1| (hypothetical protein H257_02538 [Aphanomyces astaci] >gi|574120573|gb|ETV86051.1| hypothetical protein H257_02538 [Aphanomyces astaci]) HSP 1 Score: 80.8777 bits (198), Expect = 4.196e-18 Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0 Query: 15 IASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNK 97 +++ QAL YR I+R + MPT R +FVR +LR E++ RHET+P+++ F ++ A QLDT+ IQ A S++ P YHN+ Sbjct: 1 MSTRQQALSFYRKIYRTAGLMPTKDRTEFVRRRLRGEYDQYRHETNPARIEFLIKVADTQLDTLEIQVAHFSRVFSSPSYHNQ 83
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|971520085|dbj|GAQ78130.1| (hypothetical protein KFL_000080340 [Klebsormidium nitens]) HSP 1 Score: 80.8777 bits (198), Expect = 4.879e-18 Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0 Query: 19 GQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVC-DP 92 +AL LYRA +RA++ MPT R+ ++R K R EFE RHETDPS++ L++A LQLD V+IQA LS+L DP Sbjct: 5 SRALALYRAFYRAAKSMPTANRRDYIRKKSRFEFEENRHETDPSRIRGLLQFADLQLDNVQIQAKHLSELFARDP 79
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|673019876|ref|XP_008863899.1| (hypothetical protein H310_02235 [Aphanomyces invadans] >gi|574480813|gb|ETW07806.1| hypothetical protein H310_02235 [Aphanomyces invadans]) HSP 1 Score: 80.4925 bits (197), Expect = 1.149e-17 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0 Query: 12 LSTIASGGQ------ALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNK 97 LST+ Q AL LYR I+R + MPT R +FVR +LR E++ RHETDP ++ F ++ A QLDT+ IQ ++ P YHN+ Sbjct: 8 LSTVQPSTQVTAMQIALSLYRKIYRTAGRMPTKDRTEFVRRRLRSEYDKYRHETDPERIEFLIKVADTQLDTLEIQVEHFDRVFSSPHYHNQ 99
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|219122200|ref|XP_002181439.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407425|gb|EEC47362.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 75.485 bits (184), Expect = 7.010e-16 Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 16 ASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYH 95 A+ +AL LYR + R + MPT R+KFV K R EF + + TDP ++ F + A LDTV IQA L++L+ DP YH Sbjct: 5 ATRAKALSLYRQLLRGAEKMPTPNRRKFVVKKTRTEFRSNKSLTDPDEIQFCIRLADTNLDTVMIQAEHLTRLMKDPTYH 84
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|1173944233|gb|OQR92994.1| (hypothetical protein ACHHYP_03041 [Achlya hypogyna]) HSP 1 Score: 74.7146 bits (182), Expect = 1.049e-15 Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0 Query: 19 GQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHN 96 QA+ YR+I+RA+ +P+ R +FVR +LR E+E HET+P +++F L+ A QLDT+ +Q +++ DP YH Sbjct: 4 SQAISFYRSIYRAAGLLPSKDRTQFVRRRLRSEYEKYLHETNPERISFLLQVADTQLDTLLVQVEHYNQVFSDPSYHQ 81
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|675212413|ref|XP_008915091.1| (hypothetical protein PPTG_18671 [Phytophthora parasitica INRA-310] >gi|566008170|gb|ETI31081.1| hypothetical protein F443_21916 [Phytophthora parasitica P1569] >gi|567945643|gb|ETK71454.1| hypothetical protein L915_21312 [Phytophthora parasitica] >gi|567974297|gb|ETL24895.1| hypothetical protein L916_21182 [Phytophthora parasitica] >gi|568003767|gb|ETL78109.1| hypothetical protein L917_21037 [Phytophthora parasitica] >gi|568033678|gb|ETM31373.1| hypothetical protein L914_21052 [Phytophthora parasitica] >gi|568084667|gb|ETM99591.1| hypothetical protein PPTG_18671 [Phytophthora parasitica INRA-310] >gi|570311835|gb|ETO59783.1| hypothetical protein F444_21938 [Phytophthora parasitica P1976] >gi|570935637|gb|ETP00894.1| hypothetical protein F441_21799 [Phytophthora parasitica CJ01A1] >gi|570965920|gb|ETP29039.1| hypothetical protein F442_21777 [Phytophthora parasitica P10297]) HSP 1 Score: 73.559 bits (179), Expect = 3.293e-15 Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0 Query: 19 GQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYH 95 + L+LYRAI+RA+ MPT R +VR +LR E++ R E +P +++F L A QLDTV +QA L P YH Sbjct: 6 AEVLRLYRAIYRAAGKMPTRDRTNYVRRRLRHEYDQTREEINPERISFLLRLAETQLDTVEVQAQHLKSTFSSPDYH 82
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|953491653|emb|CEG45662.1| (Complex 1 LYR protein [Plasmopara halstedii]) HSP 1 Score: 73.1738 bits (178), Expect = 5.658e-15 Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 0 Query: 15 IASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYH 95 + + +AL+LYRAI+RA+ MPT R +VR +LR E++ R E +P ++ F L A QL+TV++QA L+ P YH Sbjct: 2 VKTQAEALRLYRAIYRAAGKMPTRDRTSYVRRRLRHEYDNMREEKNPERIRFFLRLAETQLETVQVQAEHLTSTFSSPDYH 82
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|397574014|gb|EJK48983.1| (hypothetical protein THAOC_32179 [Thalassiosira oceanica]) HSP 1 Score: 69.3218 bits (168), Expect = 8.371e-13 Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0 Query: 21 ALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHN 96 AL LYR + R++ MPT R+ +V+ K +EE+ + TDP ++ F L A LDTV +QA LS+L DP Y N Sbjct: 73 ALSLYRRLLRSAERMPTPNRQNYVKRKTQEEYRKHKTLTDPQEIEFQLRLADTNLDTVMVQAEHLSRLFSDPEYQN 148 The following BLAST results are available for this feature:
BLAST of EWM30314.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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