EWM30314.1, cds449 (CDS) Nannochloropsis gaditana

Overview
NameEWM30314.1
Unique Namecds449
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1120328..1120630 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30314.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100003g32.1831.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1120328..1120630 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|553194170|ref|XP_005855897.1| (hypothetical protein NGA_2065400 [Nannochloropsis gaditana CCMP526] >gi|422293160|gb|EKU20460.1| hypothetical protein NGA_2065400 [Nannochloropsis gaditana CCMP526] >gi|585112973|gb|EWM30314.1| Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 207.608 bits (527), Expect = 5.225e-68
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI 100
            MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI
Sbjct:    1 MNVGGLSAFRRLSTIASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNKREI 100          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|1173927996|gb|OQR81731.1| (hypothetical protein THRCLA_23308 [Thraustotheca clavata])

HSP 1 Score: 85.8853 bits (211), Expect = 4.096e-20
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0
Query:   17 SGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHN 96
            S  QAL  YRAI+RA+  MP+  RK+FVR +LR E+E  RHE +P ++ F L+ A  QLDT++IQ A    ++ DP YH 
Sbjct:    2 SRSQALSYYRAIYRAAGDMPSKDRKQFVRQRLRVEYEKYRHEINPERIEFLLKVADTQLDTLKIQVAHFKNILSDPQYHQ 81          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|698782959|ref|XP_009824523.1| (hypothetical protein H257_02538 [Aphanomyces astaci] >gi|574120573|gb|ETV86051.1| hypothetical protein H257_02538 [Aphanomyces astaci])

HSP 1 Score: 80.8777 bits (198), Expect = 4.196e-18
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 0
Query:   15 IASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNK 97
            +++  QAL  YR I+R +  MPT  R +FVR +LR E++  RHET+P+++ F ++ A  QLDT+ IQ A  S++   P YHN+
Sbjct:    1 MSTRQQALSFYRKIYRTAGLMPTKDRTEFVRRRLRGEYDQYRHETNPARIEFLIKVADTQLDTLEIQVAHFSRVFSSPSYHNQ 83          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|971520085|dbj|GAQ78130.1| (hypothetical protein KFL_000080340 [Klebsormidium nitens])

HSP 1 Score: 80.8777 bits (198), Expect = 4.879e-18
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0
Query:   19 GQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVC-DP 92
             +AL LYRA +RA++ MPT  R+ ++R K R EFE  RHETDPS++   L++A LQLD V+IQA  LS+L   DP
Sbjct:    5 SRALALYRAFYRAAKSMPTANRRDYIRKKSRFEFEENRHETDPSRIRGLLQFADLQLDNVQIQAKHLSELFARDP 79          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|673019876|ref|XP_008863899.1| (hypothetical protein H310_02235 [Aphanomyces invadans] >gi|574480813|gb|ETW07806.1| hypothetical protein H310_02235 [Aphanomyces invadans])

HSP 1 Score: 80.4925 bits (197), Expect = 1.149e-17
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0
Query:   12 LSTIASGGQ------ALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHNK 97
            LST+    Q      AL LYR I+R +  MPT  R +FVR +LR E++  RHETDP ++ F ++ A  QLDT+ IQ     ++   P YHN+
Sbjct:    8 LSTVQPSTQVTAMQIALSLYRKIYRTAGRMPTKDRTEFVRRRLRSEYDKYRHETDPERIEFLIKVADTQLDTLEIQVEHFDRVFSSPHYHNQ 99          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|219122200|ref|XP_002181439.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407425|gb|EEC47362.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.485 bits (184), Expect = 7.010e-16
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:   16 ASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYH 95
            A+  +AL LYR + R +  MPT  R+KFV  K R EF + +  TDP ++ F +  A   LDTV IQA  L++L+ DP YH
Sbjct:    5 ATRAKALSLYRQLLRGAEKMPTPNRRKFVVKKTRTEFRSNKSLTDPDEIQFCIRLADTNLDTVMIQAEHLTRLMKDPTYH 84          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|1173944233|gb|OQR92994.1| (hypothetical protein ACHHYP_03041 [Achlya hypogyna])

HSP 1 Score: 74.7146 bits (182), Expect = 1.049e-15
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0
Query:   19 GQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHN 96
             QA+  YR+I+RA+  +P+  R +FVR +LR E+E   HET+P +++F L+ A  QLDT+ +Q    +++  DP YH 
Sbjct:    4 SQAISFYRSIYRAAGLLPSKDRTQFVRRRLRSEYEKYLHETNPERISFLLQVADTQLDTLLVQVEHYNQVFSDPSYHQ 81          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|675212413|ref|XP_008915091.1| (hypothetical protein PPTG_18671 [Phytophthora parasitica INRA-310] >gi|566008170|gb|ETI31081.1| hypothetical protein F443_21916 [Phytophthora parasitica P1569] >gi|567945643|gb|ETK71454.1| hypothetical protein L915_21312 [Phytophthora parasitica] >gi|567974297|gb|ETL24895.1| hypothetical protein L916_21182 [Phytophthora parasitica] >gi|568003767|gb|ETL78109.1| hypothetical protein L917_21037 [Phytophthora parasitica] >gi|568033678|gb|ETM31373.1| hypothetical protein L914_21052 [Phytophthora parasitica] >gi|568084667|gb|ETM99591.1| hypothetical protein PPTG_18671 [Phytophthora parasitica INRA-310] >gi|570311835|gb|ETO59783.1| hypothetical protein F444_21938 [Phytophthora parasitica P1976] >gi|570935637|gb|ETP00894.1| hypothetical protein F441_21799 [Phytophthora parasitica CJ01A1] >gi|570965920|gb|ETP29039.1| hypothetical protein F442_21777 [Phytophthora parasitica P10297])

HSP 1 Score: 73.559 bits (179), Expect = 3.293e-15
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   19 GQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYH 95
             + L+LYRAI+RA+  MPT  R  +VR +LR E++  R E +P +++F L  A  QLDTV +QA  L      P YH
Sbjct:    6 AEVLRLYRAIYRAAGKMPTRDRTNYVRRRLRHEYDQTREEINPERISFLLRLAETQLDTVEVQAQHLKSTFSSPDYH 82          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|953491653|emb|CEG45662.1| (Complex 1 LYR protein [Plasmopara halstedii])

HSP 1 Score: 73.1738 bits (178), Expect = 5.658e-15
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   15 IASGGQALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYH 95
            + +  +AL+LYRAI+RA+  MPT  R  +VR +LR E++  R E +P ++ F L  A  QL+TV++QA  L+     P YH
Sbjct:    2 VKTQAEALRLYRAIYRAAGKMPTRDRTSYVRRRLRHEYDNMREEKNPERIRFFLRLAETQLETVQVQAEHLTSTFSSPDYH 82          
BLAST of EWM30314.1 vs. NCBI_GenBank
Match: gi|397574014|gb|EJK48983.1| (hypothetical protein THAOC_32179 [Thalassiosira oceanica])

HSP 1 Score: 69.3218 bits (168), Expect = 8.371e-13
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0
Query:   21 ALQLYRAIWRASRGMPTIRRKKFVRDKLREEFEAARHETDPSKVAFALEYAALQLDTVRIQAASLSKLVCDPMYHN 96
            AL LYR + R++  MPT  R+ +V+ K +EE+   +  TDP ++ F L  A   LDTV +QA  LS+L  DP Y N
Sbjct:   73 ALSLYRRLLRSAERMPTPNRQNYVKRKTQEEYRKHKTLTDPQEIEFQLRLADTNLDTVMVQAEHLSRLFSDPEYQN 148          
The following BLAST results are available for this feature:
BLAST of EWM30314.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553194170|ref|XP_005855897.1|5.225e-68100.00hypothetical protein NGA_2065400 [Nannochloropsis ... [more]
gi|1173927996|gb|OQR81731.1|4.096e-2048.75hypothetical protein THRCLA_23308 [Thraustotheca c... [more]
gi|698782959|ref|XP_009824523.1|4.196e-1843.37hypothetical protein H257_02538 [Aphanomyces astac... [more]
gi|971520085|dbj|GAQ78130.1|4.879e-1853.33hypothetical protein KFL_000080340 [Klebsormidium ... [more]
gi|673019876|ref|XP_008863899.1|1.149e-1742.39hypothetical protein H310_02235 [Aphanomyces invad... [more]
gi|219122200|ref|XP_002181439.1|7.010e-1645.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173944233|gb|OQR92994.1|1.049e-1541.03hypothetical protein ACHHYP_03041 [Achlya hypogyna... [more]
gi|675212413|ref|XP_008915091.1|3.293e-1544.16hypothetical protein PPTG_18671 [Phytophthora para... [more]
gi|953491653|emb|CEG45662.1|5.658e-1541.98Complex 1 LYR protein [Plasmopara halstedii][more]
gi|397574014|gb|EJK48983.1|8.371e-1343.42hypothetical protein THAOC_32179 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna449rna449Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications