rna4489, rna4489 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4489
Unique Name	rna4489
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2295
Alignment location	CM002463.1:719458..721241 +

Link to JBrowse

Properties


Property Name	Value
Product	60s ribosomal protein l9
Orig transcript id	gnl\|cribi\|Naga_100072g24.8013.mrna
Orig protein id	gnl\|cribi\|Naga_100072g24.8013
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:719458..721241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100072g24	gene4331	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4489	rna4489-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26180.1	cds4478	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:719458..721241+
coding sequence from alignment at CM002463.1:719458..721241+

mRNA sequence

>rna4489 ID=rna4489|Name=rna4489|organism=Nannochloropsis gaditana|type=mRNA|length=2295bp
CCCCCGGCGATAAAGAAGACCTGACGATACGAACACGCAAGCGAGGTCAT
TCCCATAGGGGTTTCATTCTTTGTCTTTTGCTTGTAACTCGTAGCTCTTC
TCACTGTGGTCCGTACTATTGATTCGACAGGCAGTCGATTAACAGAAAAT
TTACCTCGCCTCGCCTTGAGACACGGACAACGCAGAAGAGAACAGGCAAC
TACCTCGTCGTCCTCATTTCCTGACCTGAGCAACCTTATACCTTTGCAGC
ATGGCGTGCTTCATGTTTCTGCGTCTTCTTGTGGTCGTTGGTACAATCGC
CTCACCCATCACAGCATTTTTTACGTCCTCGGGTAGTCCACTTTTCCGAT
GCGTGTTGCCTGCCAAGACATCACCACCCCAACCTCCCCACGCTGTCGGA
CCTTTTGCCACAGTCGCGCAACCTGCACCCACGCCTGTTTCCCCGATGCC
TCCTTCATCGACCACCTCATCATCATCCCTCACAAACGCGCCGTCCTCGT
CTGGGTCCTTGCAACCGCTTGGCCCCGGTCACGGCAGTGGGGCTCCGATC
GACTGGTGGCGACAGTGGTACCCGATGGCCTTCCTCGACGACTTGGATCC
TGCCCGCCCCACGCAGGTCGAACTGTTAGGCAAGCTCTTCGTAATATGGG
CGGACCATGACAAGACGTGGCACGCCTTCGAGGACCAATGTCCCCACCGC
CTCGCGCCCCTCTCAGAAGGCCGCATCGACGAGCGCGGAAACTTGCAATG
CGCTTACCATGGCTGGTCATTCAGTGGGCAAGGGGGCTGCGTGAATATCC
CGCAAGCCGAGCCGGAGATCAAGGCAGTCGCTGAGCGCTCGGGTCGGGCC
TGCGCCAAGGCAGTACCGCTCTTGGTGGCTCAGGGAATGGTGTGGCTGTG
GCCAGACAACTCGCCCGACGGCATGGAGGCATCTCGGAGCCAGCTTCCCA
GCACGGTGCCGGAGCTGCACGACCCGGCCTTCATCCGCGGGGCCTGGGTG
ACCCGCGACCTCATGTACGGGTACGACACGCTGGTGGAGAACGTGGTGGA
CCCGGCCCATGTTCCCTTCGCCCACCACGGCGTGCAAGCCCAGCGGAGCA
TGGCTATGCCCCTCAATGTGTCTCTGAACTACGTGGGCAAGGAGGGCGTT
TTCCTAAGCTTGCCTCGACTGGCGAACAGCACGATTGAATTCCATGCGCC
CACGCGTCTCCACTACCTGTTCGATTTCACCGGCTTCTTCCAGCGCGTCC
CCCTGATGAAGTGGGCCTTTCGCTTGGAGAAATGGCTGCGTCGACTCCCC
CCAGACACACGCCCTCGCTCCTCGTTGGTCACGTACACAATTCCAGTTGG
GCCCGGGCGCTCGCGCATCCTGGCCTTGTTTCCCCGAAATTTCTTCGCGA
TCAACAAACCCCGCTGGCTGGACCACCTGGAGCGGAACGCGGTCCTGGAC
GGAGACTTAGTCTTCTTGCATGGACAGGAGCGGGAGATGCGGCGGCCGGA
GTTGAAGTGGGAGGAGAACATTGACCGGGCGTTCTACATGCCCACCAAGT
CGGATGAGGGCGTGCGCGCTTTCCGTCAGTGGCTTGTCCGGTGGGGTGCC
GGGGGCCCGAGGTGGGCGGATGGCGTCGACTCGGCCTTACCGCCGCGCAG
CAACGACCGGCACTTCCTTATGGACCGATACACCCAGCACACAACCCAGT
GCTCTGCCTGCCGGGGGGCCCTCCGGAATATCCGGGTATTGAAAGGCGTG
ACGGCGGCGATGAGCTTGGTCTGCATGACGGCCATCTGGACGCCGCGGCC
GGCGAGCGTGTTGGGGAAAATCTTGGGCGCCGGCGTCGCCATGGCCTTCG
GTTCATGGCAGATGGCACGCCTGGAGAAGCGCATGCTTTTCATAGACTAC
GTCCACGCGCATAAGTAAGGGCAACAAGGGGGGTGGTCCAGGAGGCTCGC
GTAGAGAGACGGGGCGGAGGCAATATGCCCGCGGTGGAGAACGTTGTGCT
TGTCGCCTGGGAGAGGAGAGGCCTCTCAGTGGCGGACAATGCGATGATAT
CGATAGGCGTTCGAAAGATGTACAGCAAACGGGAAGGGGAGAGGAAGGAG
GCCGTAAATGGAAAAGCGTGCATCGCTGCTGGATACGCAGCGTGCCGAGA
ACGGTTTCGGGGCGGCTTTTTGAGTGTAAACAAACGTGAATGACGTAAAA
AAAAGATTGTGGGGACTGATAGAAGGTACGAAAGCCAGCTCTGGTGCGTA
AAATGAACATCCGTTGCTTTCCATACATCAGCAAGCCGCTTACTC

protein sequence of rna4489

>rna4489-protein ID=rna4489-protein|Name=rna4489|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGG
NKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRF
VYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIEL
KGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA

mRNA from alignment at CM002463.1:719458..721241+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4489 ID=rna4489|Name=rna4489|organism=Nannochloropsis gaditana|type=mRNA|length=1784bp|location=Sequence derived from alignment at CM002463.1:719458..721241+ (Nannochloropsis gaditana)
GATTGCGTCTCATTTTGCTTTATCTCATGTATGTCACCCTAAAATTCTCG
CCTCGTGTCCGCCACAGGTGGCTTGCTCTTGTCTAGGCAACTATGAAGCT
CATTCTGGCCACAAAAATCGTCAATATCCCTGAAGGAGGTACGTTACGCT
GAAGCCATGTTTTGTGCGGCGAAGTGGTGGAGAGTGGGACTGAAAAACGC
AAAGAATCGAGGTCCCTGTGAGAGCATTGCGTGAATGGATAATGGCCCCA
AGTAAAGCGACGTTGCAAACGAAGTCTGGTTCGTAGTAGTTAGATTGTTG
TCATTTAGAAATGGCTGACTGTCCTAGCCTCACTTGCTGTGGCGAGGTTG
GCAAGGGAGTCGGTGGCTTAAAATCTTGACGGCTGAAGCATGAGGGTGCG
CCTTGCCTGCCATGAGGTCAAGTAGGAGGACCACCGCTTCAAGGGgatgc
tccctcctccgattTAAGGGTGTCAACATGTGAAAAGGCCACTAATACGT
CATATCCGCACTTTTGGCTGGCTAATACCCTCTCATAACCATCCTGCTTG
ACGTCTaccgtcttcccccgcctctcacATATGGCAGTGACGCTGCACAT
CAAGTCTCGACATGTGACCGTTAAAGGTCCCCGTGGAGAGCTCTCCCGTG
CATTCAAACATCTGAACATCGCCTTCGAGCTCGTGGGCGGAAACAAAGAC
AAGGGGACGAACCCGAAGAAGCTGAAGGTCGACTTGTGGTTCGCCAACCG
CAAGCAGCTCGCCACCATCCGCACCGTCTGCTCTCACATCGAGAATCTGA
TGACCGGTGTGACTAAGGGCTTCTTGTACAGAATGCGCTTTGTCTACGCA
CATTTCCCCATCAACGTATCACTGACGGACAAGACGGTGGAAGTCCGCAA
CTTCTTGGGGGAGAAGCGTGTGCGACGCGTGGAGCTGCTGCCAGGGGTCG
AGTACGTGCGCTCCTCGGATGTCAAAGATCAGATCGAGTTGAAAGGAAAC
GACCTAACGGCGGTGTCCCTGACAGCCGCCCGCATTCAGCAATGCACGAC
GGTCAAGCGCAAGTACGTTCTCGGGGGTTGGTGAGCGACAGGCATCCTCT
GCTCGCGCCTAGGCTGGGGATGTACAGGCATCGTCTGCTCGCGCCTAGGC
TGGGGATGTGCCGTGTCTTGTGTCCCGGGCACCTTGGCTTCGCTTTTGGG
ATTTCAGAGTCAAAGTGCACATAATGGTCGCCTGTGTTcacccgcccttc
cctctaccctcccttttcgcccGCAGGGATATTCGAAAGTTCCTGGACGG
GATCTATGTCTCTCAGAAGACCCATATTGTCACCGCATAAGGCCAACGCg
cgaggatgggaaagcCTGTATCGTACCTAAGtggcaagaaaggggatgCA
CAACCTCTGAAACGTCGGTGCTCAAGGCAGGCATCTGCATGCGAGTGAGG
GTCTCCGCTGGATGGGAGTACCTGGGTGTCTCTGACCAAAGAGAAGCaaa
gcgtgggagggagggaagcataAGGACAAAAAAACTCTTTTTTCACGATT
GCTACGATTGGGGTTTTAATCTCGTTGCTGATGCTGCCAAAATTTATTTT
TTGATGGATGGGGTTGCCGATTCTTTCTTAAGAGTCGTGACGAAAGAACC
CAGGATTATGACCTACAAGTAACCGCCGATGGCATGTCAATAGCCTTTTT
GAGGATGTCCGGGAATGATTCGCCTTTCCATATATCCTTCGCATGAGACA
TGCTGCGGATTGCTGTTCCCACAGCTCACGGCTC

Coding sequence (CDS) from alignment at CM002463.1:719458..721241+

>rna4489 ID=rna4489|Name=rna4489|organism=Nannochloropsis gaditana|type=CDS|length=1755bp|location=Sequence derived from alignment at CM002463.1:719458..721241+ (Nannochloropsis gaditana)
ATGAAGCTCATTCTGGCCACAAAAATCGTCAATATCCCTGAAGGAGTGAC
GCTGCACATCAAGTCTCGACATGTGACCGTTAAAGGTCCCCGTGGAGAGC
TCTCCCGTGCATTCAAACATCTGAACATCGCCTTCGAGCTCGTGGGCGGA
AACAAAGACAAGGGGACGAACCCGAAGAAGCTGAAGGTCGACTTGTGGTT
CGCCAACCGCAAGCAGCTCGCCACCATCCGCACCGTCTGCTCTCACATCG
AGAATCTGATGACCGGTGTGACTAAGGGCTTCTTGTACAGAATGCGCTTT
GTCTACGCACATTTCCCCATCAACGTATCACTGACGGACAAGACGGTGGA
AGTCCGCAACTTCTTGGGGGAGAAGCGTGTGCGACGCGTGGAGCTGCTGC
CAGGGGTCGAGTACGTGCGCTCCTCGGATGTCAAAGATCAGATCGAGTTG
AAAGGAAACGACCTAACGGCGGTGTCCCTGACAGCCGCCCGCATTCAGCA
ATGCACGACGGTCAAGCGCAAGGATATTCGAAAGTTCCTGGACGGGATCT
ATGTCTCTCAGAAGACCCATATTGTCACCGCATAAATGAAGCTCATTCTG
GCCACAAAAATCGTCAATATCCCTGAAGGAGTGACGCTGCACATCAAGTC
TCGACATGTGACCGTTAAAGGTCCCCGTGGAGAGCTCTCCCGTGCATTCA
AACATCTGAACATCGCCTTCGAGCTCGTGGGCGGAAACAAAGACAAGGGG
ACGAACCCGAAGAAGCTGAAGGTCGACTTGTGGTTCGCCAACCGCAAGCA
GCTCGCCACCATCCGCACCGTCTGCTCTCACATCGAGAATCTGATGACCG
GTGTGACTAAGGGCTTCTTGTACAGAATGCGCTTTGTCTACGCACATTTC
CCCATCAACGTATCACTGACGGACAAGACGGTGGAAGTCCGCAACTTCTT
GGGGGAGAAGCGTGTGCGACGCGTGGAGCTGCTGCCAGGGGTCGAGTACG
TGCGCTCCTCGGATGTCAAAGATCAGATCGAGTTGAAAGGAAACGACCTA
ACGGCGGTGTCCCTGACAGCCGCCCGCATTCAGCAATGCACGACGGTCAA
GCGCAAGGATATTCGAAAGTTCCTGGACGGGATCTATGTCTCTCAGAAGA
CCCATATTGTCACCGCATAAATGAAGCTCATTCTGGCCACAAAAATCGTC
AATATCCCTGAAGGAGTGACGCTGCACATCAAGTCTCGACATGTGACCGT
TAAAGGTCCCCGTGGAGAGCTCTCCCGTGCATTCAAACATCTGAACATCG
CCTTCGAGCTCGTGGGCGGAAACAAAGACAAGGGGACGAACCCGAAGAAG
CTGAAGGTCGACTTGTGGTTCGCCAACCGCAAGCAGCTCGCCACCATCCG
CACCGTCTGCTCTCACATCGAGAATCTGATGACCGGTGTGACTAAGGGCT
TCTTGTACAGAATGCGCTTTGTCTACGCACATTTCCCCATCAACGTATCA
CTGACGGACAAGACGGTGGAAGTCCGCAACTTCTTGGGGGAGAAGCGTGT
GCGACGCGTGGAGCTGCTGCCAGGGGTCGAGTACGTGCGCTCCTCGGATG
TCAAAGATCAGATCGAGTTGAAAGGAAACGACCTAACGGCGGTGTCCCTG
ACAGCCGCCCGCATTCAGCAATGCACGACGGTCAAGCGCAAGGATATTCG
AAAGTTCCTGGACGGGATCTATGTCTCTCAGAAGACCCATATTGTCACCG
CATAA

Synonyms

Publications