EWM26180.1, cds4478 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|585108177|gb|EWM26180.1| (60s ribosomal protein l9 [Nannochloropsis gaditana]) HSP 1 Score: 397.897 bits (1021), Expect = 3.349e-140 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA 194
MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA
Sbjct: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA 194
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|299470032|emb|CBN79209.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 290.812 bits (743), Expect = 5.041e-98 Identity = 139/192 (72.40%), Postives = 163/192 (84.90%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
MK +LAT+ V IPEGVT+ +KSR VTV GPRGEL ++FKHLN+ + G NK L+VDLWF NRKQLA IRT+CSH+EN++TGVTKG+LY+MRF YAHFPINVS+T KTVE+RNFLGEKRVRRVEL PGV+YVR+SDVKDQIEL GND+ AVS+TAARIQQ T+VKRKDIRKFLDGIYVS+K +IV
Sbjct: 1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNK--------LRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIV 184
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|219114991|ref|XP_002178291.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410026|gb|EEC49956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 253.832 bits (647), Expect = 4.006e-83 Identity = 120/197 (60.91%), Postives = 153/197 (77.66%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGG---------NKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQK 188
MK +LA++ + IP+GVT+ I +R + V GPRG L R FKH+++ V G + ++ TN +KVDLWFA RKQLA +RTVCSHI+NL GVT+GFLY+MRFVY+HFPINV+LT +TVE+RNFLGEKRVR+V+LL GV Y R++ VKDQIEL GND+ AVSLTAA+IQQ T ++ KD+RKFLDGIYVS+K
Sbjct: 1 MKTVLASRNIVIPDGVTVEINARKIKVTGPRGVLERDFKHISMDLRKVDGESLGYTVEEDGEEATNASYIKVDLWFATRKQLACVRTVCSHIDNLFVGVTRGFLYKMRFVYSHFPINVTLTGETVEIRNFLGEKRVRKVKLLEGVSYERTASVKDQIELSGNDIAAVSLTAAKIQQATNIRHKDLRKFLDGIYVSEK 197
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|1210529412|dbj|GAX12046.1| (large subunit ribosomal protein L9e [Fistulifera solaris]) HSP 1 Score: 246.128 bits (627), Expect = 4.347e-80 Identity = 117/194 (60.31%), Postives = 149/194 (76.80%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGN------KDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQK 188
MK +LA + V +PE V + I +R + VKGP GEL+R FKH+ + + G KD + +KVDLWFA+RKQLA+ RTVCSHIEN+ GVT+GF+Y++R VY+HFPINV+L+ TVE+RNFLGEKRVR+VEL PGV+YVRS VKDQIEL G D+TAVSLTAA+IQQ T ++ KD+RKFLDGIYV++K
Sbjct: 1 MKTVLAARAVIVPENVEVSINARSIKVKGPLGELTRDFKHIAMDMRICKGADIMDFLKDPQEDRNYVKVDLWFAHRKQLASCRTVCSHIENMFVGVTRGFIYKLRAVYSHFPINVTLSGNTVEIRNFLGEKRVRKVELFPGVKYVRSETVKDQIELSGIDITAVSLTAAQIQQATNIRNKDLRKFLDGIYVAEK 194
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|1210522166|dbj|GAX18928.1| (large subunit ribosomal protein L9e [Fistulifera solaris]) HSP 1 Score: 245.358 bits (625), Expect = 6.306e-80 Identity = 117/194 (60.31%), Postives = 149/194 (76.80%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGN------KDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQK 188
MK +LA + V +PE V + I +R + VKGP GEL+R FKH+ + + G KD + +KVDLWFA+RKQLA+ RTVCSHIEN+ GVT+GF+Y++R VY+HFPINV+L+ TVE+RNFLGEKRVR+VEL PGV+YVRS VKDQIEL G D+TAVSLTAA+IQQ T ++ KD+RKFLDGIYV++K
Sbjct: 1 MKTVLAARAVIVPENVEVSINARSIKVKGPLGELTRDFKHIAMDMRICKGAEIMDFLKDPQEDRNYVKVDLWFAHRKQLASCRTVCSHIENMFVGVTRGFVYKLRAVYSHFPINVTLSGNTVEIRNFLGEKRVRKVELFPGVKYVRSETVKDQIELSGIDITAVSLTAAQIQQATNIRNKDLRKFLDGIYVAEK 194
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|676389825|ref|XP_009038191.1| (hypothetical protein AURANDRAFT_71877 [Aureococcus anophagefferens] >gi|323451071|gb|EGB06949.1| hypothetical protein AURANDRAFT_71877 [Aureococcus anophagefferens]) HSP 1 Score: 244.973 bits (624), Expect = 4.360e-79 Identity = 116/191 (60.73%), Postives = 147/191 (76.96%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
MK I TK +NIPEGV + KSR V+VKGPRGEL+R FKH+ + E+ +LK+ LWF RKQ+ATIRT+ SH+EN++ GVT+GF Y+MRFVY+HFPINV+L + VE+RNFLG+K VR+V+LL GV+YVR++DVKDQIEL ND+ AVSLTAARI+Q +K KD+RKFLDGI+VSQK I
Sbjct: 54 MKTINGTKFLNIPEGVEVTCKSRTVSVKGPRGELTRTFKHVQLEMEMT----TNAAGAPQLKIQLWFGTRKQIATIRTIYSHVENMVIGVTQGFCYKMRFVYSHFPINVALNGRVVEIRNFLGDKLVRKVKLLDGVDYVRTADVKDQIELTSNDIAAVSLTAARIRQSCDIKHKDLRKFLDGIFVSQKGPI 240
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|676398413|ref|XP_009042484.1| (hypothetical protein AURANDRAFT_60385 [Aureococcus anophagefferens] >gi|323446771|gb|EGB02818.1| hypothetical protein AURANDRAFT_60385 [Aureococcus anophagefferens]) HSP 1 Score: 241.891 bits (616), Expect = 1.343e-78 Identity = 115/191 (60.21%), Postives = 147/191 (76.96%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
MK I TK ++IPEGV + KSR V+VKGPRGEL+R FKH+ + E+ +LK+ LWF RKQ+ATIRT+ SH+EN++ GVT+GF Y+MRFVY+HFPINV+L + VE+RNFLG+K VR+V+LL GV+YVR++DVKDQIEL ND+ AVSLTAARI+Q +K KD+RKFLDGI+VSQK I
Sbjct: 1 MKTINGTKFLDIPEGVEVTCKSRTVSVKGPRGELTRTFKHVQLEMEMT----TNAAGAPQLKIQLWFGTRKQIATIRTIYSHVENMVIGVTQGFCYKMRFVYSHFPINVALNGRVVEIRNFLGDKLVRKVKLLDGVDYVRTADVKDQIELTSNDIAAVSLTAARIRQSCDIKHKDLRKFLDGIFVSQKGPI 187
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|223995717|ref|XP_002287532.1| (RL9, ribosomal protein 9 [Thalassiosira pseudonana CCMP1335] >gi|220976648|gb|EED94975.1| RL9, ribosomal protein 9 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 239.58 bits (610), Expect = 8.511e-78 Identity = 116/191 (60.73%), Postives = 146/191 (76.44%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
MK +LA++ ++IPEGVT+ I +R V V GPRG L+R FKH+N+ VG K ++VDLWFA RKQLA +RTVCSHI+N++ GVT+GF+Y+MRFVY+HFPINV+L VE+RNFLGEKRVR+V LL GV+Y RS KD+I L GND+ VSLTAA+IQQ T V+ KD+RKFLDGIYVS+K I
Sbjct: 1 MKTVLASRTIDIPEGVTVEIAARIVKVTGPRGSLTRDFKHINMDLRKVGD--------KSVRVDLWFATRKQLACVRTVCSHIDNMIVGVTQGFIYKMRFVYSHFPINVTLNGNDVEIRNFLGEKRVRKVPLLEGVKYTRSEQ-KDEIFLSGNDIALVSLTAAQIQQSTNVRNKDLRKFLDGIYVSEKGAI 182
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|565368875|ref|XP_006351066.1| (PREDICTED: 60S ribosomal protein L9-1 [Solanum tuberosum]) HSP 1 Score: 236.884 bits (603), Expect = 1.262e-76 Identity = 113/194 (58.25%), Postives = 152/194 (78.35%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLT--DKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
MK IL+++ ++IPEG+T+ +K++ + V+GPRG+L+R FKHLN+ F+L+ KD+ T KKLK+D WF +RK A IRT SH+ENL+TGVTKG+ Y+MRFVYAHFPIN S++ +K++E+RNFLGEK+VR+V++L GV VRS VKD++ L GND+ VS +AA I Q VK KDIRKFLDGIYVS+K IV
Sbjct: 1 MKTILSSETMDIPEGITIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLI---KDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISGGNKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIV 191
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|460398452|ref|XP_004244773.1| (PREDICTED: 60S ribosomal protein L9-1 [Solanum lycopersicum] >gi|970043979|ref|XP_015083397.1| PREDICTED: 60S ribosomal protein L9-1 [Solanum pennellii]) HSP 1 Score: 235.728 bits (600), Expect = 4.157e-76 Identity = 112/194 (57.73%), Postives = 152/194 (78.35%), Query Frame = 0
Query: 1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLT--DKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
MK IL+++ ++IP+G+T+ +K++ + V+GPRG+L+R FKHLN+ F+L+ KD+ T KKLK+D WF +RK A IRT SH+ENL+TGVTKG+ Y+MRFVYAHFPIN S++ +K++E+RNFLGEK+VR+V++L GV VRS VKD++ L GND+ VS +AA I Q VK KDIRKFLDGIYVS+K IV
Sbjct: 1 MKTILSSETMDIPDGITIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLI---KDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISGGNKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIV 191 The following BLAST results are available for this feature:
BLAST of EWM26180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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