EWM26180.1, cds4478 (CDS) Nannochloropsis gaditana

Overview
NameEWM26180.1
Unique Namecds4478
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:719550..719595 +
Alignment locationCM002463.1:720045..720519 +
Alignment locationCM002463.1:720734..720797 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26180.1
Product60s ribosomal protein l9
Orig transcript idgnl|cribi|Naga_100072g24.8013.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:719550..719595 +
CM002463.1supercontigCM002463.1:720045..720519 +
CM002463.1supercontigCM002463.1:720734..720797 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002359Ribosomal_L6_CS2
IPR000702Ribosomal_L6
IPR020040Ribosomal_L6_a/b-dom
Homology
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|585108177|gb|EWM26180.1| (60s ribosomal protein l9 [Nannochloropsis gaditana])

HSP 1 Score: 397.897 bits (1021), Expect = 3.349e-140
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA 194
            MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA
Sbjct:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIVTA 194          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|299470032|emb|CBN79209.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 290.812 bits (743), Expect = 5.041e-98
Identity = 139/192 (72.40%), Postives = 163/192 (84.90%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
            MK +LAT+ V IPEGVT+ +KSR VTV GPRGEL ++FKHLN+  +  G NK        L+VDLWF NRKQLA IRT+CSH+EN++TGVTKG+LY+MRF YAHFPINVS+T KTVE+RNFLGEKRVRRVEL PGV+YVR+SDVKDQIEL GND+ AVS+TAARIQQ T+VKRKDIRKFLDGIYVS+K +IV
Sbjct:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNK--------LRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIV 184          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|219114991|ref|XP_002178291.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410026|gb|EEC49956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 253.832 bits (647), Expect = 4.006e-83
Identity = 120/197 (60.91%), Postives = 153/197 (77.66%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGG---------NKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQK 188
            MK +LA++ + IP+GVT+ I +R + V GPRG L R FKH+++    V G         + ++ TN   +KVDLWFA RKQLA +RTVCSHI+NL  GVT+GFLY+MRFVY+HFPINV+LT +TVE+RNFLGEKRVR+V+LL GV Y R++ VKDQIEL GND+ AVSLTAA+IQQ T ++ KD+RKFLDGIYVS+K
Sbjct:    1 MKTVLASRNIVIPDGVTVEINARKIKVTGPRGVLERDFKHISMDLRKVDGESLGYTVEEDGEEATNASYIKVDLWFATRKQLACVRTVCSHIDNLFVGVTRGFLYKMRFVYSHFPINVTLTGETVEIRNFLGEKRVRKVKLLEGVSYERTASVKDQIELSGNDIAAVSLTAAKIQQATNIRHKDLRKFLDGIYVSEK 197          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|1210529412|dbj|GAX12046.1| (large subunit ribosomal protein L9e [Fistulifera solaris])

HSP 1 Score: 246.128 bits (627), Expect = 4.347e-80
Identity = 117/194 (60.31%), Postives = 149/194 (76.80%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGN------KDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQK 188
            MK +LA + V +PE V + I +R + VKGP GEL+R FKH+ +   +  G       KD   +   +KVDLWFA+RKQLA+ RTVCSHIEN+  GVT+GF+Y++R VY+HFPINV+L+  TVE+RNFLGEKRVR+VEL PGV+YVRS  VKDQIEL G D+TAVSLTAA+IQQ T ++ KD+RKFLDGIYV++K
Sbjct:    1 MKTVLAARAVIVPENVEVSINARSIKVKGPLGELTRDFKHIAMDMRICKGADIMDFLKDPQEDRNYVKVDLWFAHRKQLASCRTVCSHIENMFVGVTRGFIYKLRAVYSHFPINVTLSGNTVEIRNFLGEKRVRKVELFPGVKYVRSETVKDQIELSGIDITAVSLTAAQIQQATNIRNKDLRKFLDGIYVAEK 194          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|1210522166|dbj|GAX18928.1| (large subunit ribosomal protein L9e [Fistulifera solaris])

HSP 1 Score: 245.358 bits (625), Expect = 6.306e-80
Identity = 117/194 (60.31%), Postives = 149/194 (76.80%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGN------KDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQK 188
            MK +LA + V +PE V + I +R + VKGP GEL+R FKH+ +   +  G       KD   +   +KVDLWFA+RKQLA+ RTVCSHIEN+  GVT+GF+Y++R VY+HFPINV+L+  TVE+RNFLGEKRVR+VEL PGV+YVRS  VKDQIEL G D+TAVSLTAA+IQQ T ++ KD+RKFLDGIYV++K
Sbjct:    1 MKTVLAARAVIVPENVEVSINARSIKVKGPLGELTRDFKHIAMDMRICKGAEIMDFLKDPQEDRNYVKVDLWFAHRKQLASCRTVCSHIENMFVGVTRGFVYKLRAVYSHFPINVTLSGNTVEIRNFLGEKRVRKVELFPGVKYVRSETVKDQIELSGIDITAVSLTAAQIQQATNIRNKDLRKFLDGIYVAEK 194          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|676389825|ref|XP_009038191.1| (hypothetical protein AURANDRAFT_71877 [Aureococcus anophagefferens] >gi|323451071|gb|EGB06949.1| hypothetical protein AURANDRAFT_71877 [Aureococcus anophagefferens])

HSP 1 Score: 244.973 bits (624), Expect = 4.360e-79
Identity = 116/191 (60.73%), Postives = 147/191 (76.96%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
            MK I  TK +NIPEGV +  KSR V+VKGPRGEL+R FKH+ +  E+            +LK+ LWF  RKQ+ATIRT+ SH+EN++ GVT+GF Y+MRFVY+HFPINV+L  + VE+RNFLG+K VR+V+LL GV+YVR++DVKDQIEL  ND+ AVSLTAARI+Q   +K KD+RKFLDGI+VSQK  I
Sbjct:   54 MKTINGTKFLNIPEGVEVTCKSRTVSVKGPRGELTRTFKHVQLEMEMT----TNAAGAPQLKIQLWFGTRKQIATIRTIYSHVENMVIGVTQGFCYKMRFVYSHFPINVALNGRVVEIRNFLGDKLVRKVKLLDGVDYVRTADVKDQIELTSNDIAAVSLTAARIRQSCDIKHKDLRKFLDGIFVSQKGPI 240          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|676398413|ref|XP_009042484.1| (hypothetical protein AURANDRAFT_60385 [Aureococcus anophagefferens] >gi|323446771|gb|EGB02818.1| hypothetical protein AURANDRAFT_60385 [Aureococcus anophagefferens])

HSP 1 Score: 241.891 bits (616), Expect = 1.343e-78
Identity = 115/191 (60.21%), Postives = 147/191 (76.96%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
            MK I  TK ++IPEGV +  KSR V+VKGPRGEL+R FKH+ +  E+            +LK+ LWF  RKQ+ATIRT+ SH+EN++ GVT+GF Y+MRFVY+HFPINV+L  + VE+RNFLG+K VR+V+LL GV+YVR++DVKDQIEL  ND+ AVSLTAARI+Q   +K KD+RKFLDGI+VSQK  I
Sbjct:    1 MKTINGTKFLDIPEGVEVTCKSRTVSVKGPRGELTRTFKHVQLEMEMT----TNAAGAPQLKIQLWFGTRKQIATIRTIYSHVENMVIGVTQGFCYKMRFVYSHFPINVALNGRVVEIRNFLGDKLVRKVKLLDGVDYVRTADVKDQIELTSNDIAAVSLTAARIRQSCDIKHKDLRKFLDGIFVSQKGPI 187          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|223995717|ref|XP_002287532.1| (RL9, ribosomal protein 9 [Thalassiosira pseudonana CCMP1335] >gi|220976648|gb|EED94975.1| RL9, ribosomal protein 9 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 239.58 bits (610), Expect = 8.511e-78
Identity = 116/191 (60.73%), Postives = 146/191 (76.44%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHI 191
            MK +LA++ ++IPEGVT+ I +R V V GPRG L+R FKH+N+    VG         K ++VDLWFA RKQLA +RTVCSHI+N++ GVT+GF+Y+MRFVY+HFPINV+L    VE+RNFLGEKRVR+V LL GV+Y RS   KD+I L GND+  VSLTAA+IQQ T V+ KD+RKFLDGIYVS+K  I
Sbjct:    1 MKTVLASRTIDIPEGVTVEIAARIVKVTGPRGSLTRDFKHINMDLRKVGD--------KSVRVDLWFATRKQLACVRTVCSHIDNMIVGVTQGFIYKMRFVYSHFPINVTLNGNDVEIRNFLGEKRVRKVPLLEGVKYTRSEQ-KDEIFLSGNDIALVSLTAAQIQQSTNVRNKDLRKFLDGIYVSEKGAI 182          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|565368875|ref|XP_006351066.1| (PREDICTED: 60S ribosomal protein L9-1 [Solanum tuberosum])

HSP 1 Score: 236.884 bits (603), Expect = 1.262e-76
Identity = 113/194 (58.25%), Postives = 152/194 (78.35%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLT--DKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
            MK IL+++ ++IPEG+T+ +K++ + V+GPRG+L+R FKHLN+ F+L+   KD+ T  KKLK+D WF +RK  A IRT  SH+ENL+TGVTKG+ Y+MRFVYAHFPIN S++  +K++E+RNFLGEK+VR+V++L GV  VRS  VKD++ L GND+  VS +AA I Q   VK KDIRKFLDGIYVS+K  IV
Sbjct:    1 MKTILSSETMDIPEGITIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLI---KDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISGGNKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIV 191          
BLAST of EWM26180.1 vs. NCBI_GenBank
Match: gi|460398452|ref|XP_004244773.1| (PREDICTED: 60S ribosomal protein L9-1 [Solanum lycopersicum] >gi|970043979|ref|XP_015083397.1| PREDICTED: 60S ribosomal protein L9-1 [Solanum pennellii])

HSP 1 Score: 235.728 bits (600), Expect = 4.157e-76
Identity = 112/194 (57.73%), Postives = 152/194 (78.35%), Query Frame = 0
Query:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLT--DKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
            MK IL+++ ++IP+G+T+ +K++ + V+GPRG+L+R FKHLN+ F+L+   KD+ T  KKLK+D WF +RK  A IRT  SH+ENL+TGVTKG+ Y+MRFVYAHFPIN S++  +K++E+RNFLGEK+VR+V++L GV  VRS  VKD++ L GND+  VS +AA I Q   VK KDIRKFLDGIYVS+K  IV
Sbjct:    1 MKTILSSETMDIPDGITIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLI---KDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISGGNKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIV 191          
The following BLAST results are available for this feature:
BLAST of EWM26180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108177|gb|EWM26180.1|3.349e-140100.0060s ribosomal protein l9 [Nannochloropsis gaditana... [more]
gi|299470032|emb|CBN79209.1|5.041e-9872.40conserved unknown protein [Ectocarpus siliculosus][more]
gi|219114991|ref|XP_002178291.1|4.006e-8360.91predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210529412|dbj|GAX12046.1|4.347e-8060.31large subunit ribosomal protein L9e [Fistulifera s... [more]
gi|1210522166|dbj|GAX18928.1|6.306e-8060.31large subunit ribosomal protein L9e [Fistulifera s... [more]
gi|676389825|ref|XP_009038191.1|4.360e-7960.73hypothetical protein AURANDRAFT_71877 [Aureococcus... [more]
gi|676398413|ref|XP_009042484.1|1.343e-7860.21hypothetical protein AURANDRAFT_60385 [Aureococcus... [more]
gi|223995717|ref|XP_002287532.1|8.511e-7860.73RL9, ribosomal protein 9 [Thalassiosira pseudonana... [more]
gi|565368875|ref|XP_006351066.1|1.262e-7658.25PREDICTED: 60S ribosomal protein L9-1 [Solanum tub... [more]
gi|460398452|ref|XP_004244773.1|4.157e-7657.73PREDICTED: 60S ribosomal protein L9-1 [Solanum lyc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4489rna4489Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications