rna4479, rna4479 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4479
Unique Name	rna4479
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3372
Alignment location	CM002463.1:689422..691404 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100025g10.7521.mrna
Orig protein id	gnl\|cribi\|Naga_100025g10.7521
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:689422..691404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g10	gene4321	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26230.1	cds4468	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4479	rna4479-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:689422..691404-
coding sequence from alignment at CM002463.1:689422..691404-

mRNA sequence

>rna4479 ID=rna4479|Name=rna4479|organism=Nannochloropsis gaditana|type=mRNA|length=3372bp
GCTGATTTGAGGGACGATCCTCCTCCATGCACACCGAGCACCACCAAGAA
AAGAGCTCGCACCACGACGAGTACAAGAAGTCACGTACTAGACGCATGCA
TCACGACAATCTTTGTACTTGACATTGAAGAAGTTGGCCGAGGTGGCGAG
ATATATATTTATGGCTGCACAAACGACCGAAAAAGTGTGCTTCTCTCCCT
GGCGGGCTTTCGATACAGCTTTTTTGTGGAACTTCCCGCTGGTGTCGTCA
CTTCCCACGGTTTATCTCCAGACGTTGAGCATGACATTCAGGCACGAATC
CGGGGGCATGTGGATTTTACAAGCGAGGCCGTAACGCGACGGAGTTTGGT
ATTATACCGGAATGAACCTGACGCTCTCATGCTGCGCGTGTACCCGACAA
CGCAGCGTAGCGCCACGAACAGGATAGTGGCGGCATTTCAAGCAGTGCTT
GGGAAATCAAATGTTATACTTTATGACACGCAAGTAGACGTCTCTACTCG
ATTTTCTATGGACAGTGGCATACGAGGTGGCGATTGGCTTGAGGTACCTG
TGATTGAAGGTGCGGCGAATAGTCATGGGGACCATAAAATGCGGGGTAGC
CGGAAATCCGCATGTGACATAGAGCTCGCATGTACCTGGGATCAGAAGAA
GAGGGAAGTGACATATTTTGGCCGAACAATTCAAATTCATTCTTTCGCGG
AATCGCAGCGGTGGAGTGCACTACCGCCTTTGAAGATCGTGTCTTTGTCC
GTGGAGCGCCACCGTGCGCCCGTTCCTGACTCGCAGTGGAGAGACAGGGG
ACAAGAGTGTCCAGATCCGATCCGCATGATTAGTATGGTGACCACGTACG
AAAACGGCGGACACTTACCGCACTCCCGCACCAAGGTGCTCATGCTCAAC
TTGACAGGGCTTGAAAAGCTCGCCGACAAGGCCGGTGGCTCGACTGGAAA
AACCACTCGGAAGGTTGGGGGTCTACGAGTAGGTGGAAGCTGGGTAACTC
GCCTCTACAAGGATGAGGCGGCCTTGTTGCAGGCATTTGACGACTTTATG
ATCCAAGAAGATCCGAGTCTAGTGACGGGATTCGAGGTCGGGGAGAGTTT
ACGAGTTCTTTTGGGGAGGGCGGAGGCGCTCAAAATGCGAACTTTTGGCA
CCTTTTCCCGAAGGCGAGGAGAAATGATTTCGGTGAAAAGTCAACAGAGC
TATGGGGCCAAATGGGTGAAAGACAAGCCACGTATGAGCGCGACTACTAA
CCAAGAGGGCACCGAAGTGCATTGTCCAGGCCGCGTGGTCCTCGACTTAA
TGCGCGTGATCCAGATGAGCGAAGCCTTGCGTCTTTATACCCTAGGAGAT
ATCTCTATGCATGTATTGGGCCGGACATTTGAAGTGCTGGATACGGGAAG
CGTAGAGGCACTGCTGACAGAGGAAGATAGCACAGGTTGGGCCCGTGCAA
TGGAGGCTGGACTAAGCCCCGCGGTACTTGCCTTAGACGTGATAGCTAAG
AAGAACGCGGTGGCGGAACTCGTTGAAATTGCCCGTGTTACGGGCATGTC
ATTGGCTCATGTATATATACGAGGGCAAATGGCGCGTGTTACCAGCATGC
TGCAAATCCACGCCTCGCGTCAAGGAGTCGTGGTCCCGACGAGTACCGAA
GGGCTCTTAGACAAAGCAGCACTCGTCAAAAGCGCTTTATTGCTCGACCC
TTCCCAACCTTCTCCGTCCAATCCCGAAGGCATTGGCACCGTGGGTCTGC
ATACGAATCCCGTTGCTGTCCTGGACTTTCGAAGCCTCTACCCGTCAATC
ATGATCCACCACAATTTATGCTACAGTACTCTTATTAGAAATCCTTCCGA
GACACGTACTTGTCTTTCAAAGGATGGTATCTTCTCCACTCCGATCGGTG
CATGCTTTGTGAAATCAGAGGTACGACGGGGTGTTATACCAAGCCTTTTG
GCTGACCTTCTGGAAGCGCGAAGTCAGGCTCAAAAGATGTTGAAAGAGCC
ATACGTAAGTGAAGGACAAAGGCGCGTATTGGACGCTCGGCAAAAGGCAT
TCAAACTTGCTGCAAACGCTGTGTATGGCTTCACAGGGGCGACAGTCAAT
AGCCTTTTCTCACGCGAGATCGGTGATTCGGTGTTGGCTCTGGGCCGAGA
ATACATGTCACACGTCATCTCATTAGTCGGCAAAGACCACCCAGAGCTGA
AGGTAGTTTACGGTGACACGGACTCTGTCTTCGTCGAATATCCTGCCTGG
ACCTCAGAGGCAGCGGAAACCCACTCCAAGGAGTTGTTAACACCTGCTCT
GAACAAAAAATTGCCATCTCGTGTCCAACTTAAGCACGAAAAAGTGTTAG
CTCCGCTTCTATTACAGCACATTCGGCGCTATGCGGGCTATGAGTATGTC
AATGGAGGTCCAGGCGAATCCCCAAGATTTAATCGACGATCACTGCACAT
CAAGGGAATGGAGGCCGTCGCGCGAAATAGCATGCCCTTTCTTGTCAACA
TGATGGAAGATACGTTAGCAATAATCTTAACCTCTGGGGCTTCCAGTGGC
CGGGTCGATCTCGAAGCTGTGAAAGAAACCATTCGACAGCGAGTTGCAGC
GTTGATGACTAATAAAATTGACTTGTACAGCCTTACTTGGACGAAGGGCC
TCTGGCGTTTGGGTGAGTATGATGCAAAATTACCGCATGTGCATCTTGTT
GCGAAGCTTGAGTTGCAGGACCCTCGACGACAATTTCGTGTTGGGGAGCG
GGTGGCCTACGTATTTGTACAGCGCGAGGCGAGTGCGCCTCTGTACAGAA
AAGCCGAGTCCCCTCCGCTGGCTCTGACTAACAATATGACTTTGGACCTT
ATGGAGTATTTGAAACAAATTCGTATGCCCATGGTGCGGATGCTACAGCT
CGTCATGCCTATGGCAGAGGCAGAAGAACTATTCAAACCTTCATATCGTG
CCGCTCCAGCGGGCAAAGTTTCGGGTGTCTCATCCATCAGCCACTTTTTC
GCAATTGACACGGGGTTGCGATGCCTTAATTGCCGTACGAAATTGCCTAA
ATCGCGTGAAAAGAATACCAAGCGCCACGATAGGAGTCAGGGAGGGCTCG
AAAGGCCAGGAACAAGGTTGTGTGCATCCTGCAAGGACGCTCCGCTCAAA
TGCATTCTTCCTTGTCAAGAGGCCTTGCGCTTCTGCGAGACCGAACATCA
AAAGGCATACAGTCATTGTAGTCGATGTCAGCGAGGAAGTCGACATTGGA
AAGTGCTGTGTTTTAACGAAACATGTCCAGTCATGTATCATCGTGAAAGG
TTCGCATACGAGAGGGAACAGGCCGCGCTTAAAGTTGAGGAGATGGAGGC
AGCTTTGTCGCCTTACGTTTGA

protein sequence of rna4479

>rna4479-protein ID=rna4479-protein|Name=rna4479|organism=Nannochloropsis gaditana|type=polypeptide|length=583bp
MTAGSSTQHFHRCFGGKRGAAPGFLAYGNFSSIARLTGCLLVRTLFDTSM
TTNKHQKGKHKRHRSQSPIFTSDASTPFSTCASAPSSDRAKTFQDPSDYP
HGGGSDSDVKTYADMSGSSKRGVTILPDSAADGISGGKDRAGAKDGKSFP
QGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTE
RKGQLLSGITREDVYECLRDVEITTQFPVEGEPREETGKAVAQQFLHAME
VQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWR
QSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWK
VEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADSKA
LVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLA
GLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTV
IPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASVEDLKRTYNAGKESARN
VMYRMKRGLKRWSAFSRDGNKAPKTCRKAGKMD

mRNA from alignment at CM002463.1:689422..691404-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4479 ID=rna4479|Name=rna4479|organism=Nannochloropsis gaditana|type=mRNA|length=1983bp|location=Sequence derived from alignment at CM002463.1:689422..691404- (Nannochloropsis gaditana)
CGGCTTCAGCGAGCATTCCTCGAAGGATGATATCAAGTACTAAGAACCGC
AGTTCGCGCTTCTGTCTCGGTGAATGACAGCAGGTTCGTCTACACAGCAC
TTCCACAGGTGTTTTGGGGGGAAGCGTGGGGCTGCTCCGGGCTTTTTGGC
TTATGGAAACTTTTCTTCAATTGCTCGCCTGACTGGCTGCCTTCTAGTCC
GCACTCTGTTTGACACCTCAATGACAACGAACAAGCATCAAAAGGGCAAA
CATAAGCGCCACCGGTCACAGTCTCCTATCTTTACTTCAGATGCATCCAC
ACCTTTCAGTACTTGTGCTTCTGCTCCATCGTCAGACCGAGCAAAGACCT
TTCAAGACCCAAGTGATTACCCACACGGTGGCGGGAGCGATAGCGACGTG
AAAACCTATGCCGATATGTCCGGCAGCAGCAAGAGAGGGGTTACAATATT
ACCTGACAGCGCTGCAGATGGCATTTCTGGAGGTAAGGATCGTGCTGGTG
CCAAGGATGGGAAATCTTTTCCACAAGGCAGGCGGAGCTCCATTGGACAG
GCCCCCGCACCCGCCATTCACTTGCACGAATGCATCGCGGGGCTTTTTGA
GGACGGTGAACACTCGATTGGAAGAAGCTACACAGAAGCTGCTCTGCAAC
ACTGGCGCAGTCTTGACACGGAAAGGAAAGGGCAATTGCTCAGCGGCATA
ACGAGGGAGGATGTGTACGAGTGCTTGCGGGACGTCGAGATCACGACACA
ATTTCCCGTGGAGGGAGAGCCCCGCGAGGAGACAGGAAAGGCCGTGGCGC
AGCAGTTCTTGCACGCAATGGAGGTCCAGGATGGTGTTTTCCGGTTTCCC
TCAGCCCCATCCCTGGAATTTGTGGGCTTCTTTGCCTCGCTCGAAAGAAA
CTTGCTCATGTCCATGGAGGAGGAGAACCTGAGAAATCAAGCAGCCATGG
TTGGATGCCTTCTCTTGTGGCGGCAGTCTTGGTGGATGTACGCAATTATT
CCTGTTGTCCTTCTTCTTCTGCTCGAGAACGCTTGGTGCAGAAAAGCAAG
GAGCTGCCTGTGGGAGCTCCTCTCGCAAAGCTTCCTCAGGCGACGTCGTT
GGCAGCCGTATGTGCGATGGAAGGTAGAGGCTTATAGTGTTGCAGCTCTA
AGCATTGCTATGGCATCGCAGAGCAAGTGGTGTTACAAAGTTACCCTGCT
TTTCATAGGCCTGGTGCTCTTCCTGGACTATCGGTCTGCGTCGTCCACGT
CTTTGTACGCTGACTCCAAGGCCCTCGTCACTGTCCGTCAGCTGCTTCTG
CATTTACAGAAATTTCTGCTCCTCTATCTTGCCTACCATTCCTACGTCGC
ACTTTTCACAGTCTGCCTCTCCTACTTCCCCACTTTCACTGTTCTTCTTC
TCTCCAGCGTCTACTTCCTCGCTGGGCTGGGCATCTCTCTTTTTTGGCAA
ATTGTGCACGACAAGCTCTTATCCTATTTCCCCCGCTGGCGGGATAGTTT
AGACGCATGGTGGCAGGACGGGCGAGATGGGCTGAATCGAGCTATGGTGC
TGGCGCTGATTGCCGTCACCGTTATACCCTACACATTTTACTCGAGCTGG
AACACAATTCCAGCTTGGCGGGGAACCTTCTGGCGATTTTTGAGCGTGAT
GGTGGTGACCAATTTGGCTTCGGTTGAGGATCTGAAGCGGACCTACAATG
CAGGAAAAGAGTCAGCAAGAAACGTAATGTACCGCATGAAGCGAGGGCTC
AAGAGATGGAGTGCTTTTTCACGAGATGGGAATAAAGCGCCCAAAACGTG
TCGGAAAGCCGGAAAAATGGATTAAATAGGCTGTATACGATGTATGTGGA
CACAAATGTATCATTGAAGAGCTAATGGGAAGAGCCAATGCACATAGCAG
ATAAATGAAGAAAGGATTGCGCATCTGAGTTGTGTTTGTTTTCACAGCTT
TTAATTAGGAGGAGGAAACGTAGTTTATTTATT

Coding sequence (CDS) from alignment at CM002463.1:689422..691404-

>rna4479 ID=rna4479|Name=rna4479|organism=Nannochloropsis gaditana|type=CDS|length=1752bp|location=Sequence derived from alignment at CM002463.1:689422..691404- (Nannochloropsis gaditana)
ATGACAGCAGGTTCGTCTACACAGCACTTCCACAGGTGTTTTGGGGGGAA
GCGTGGGGCTGCTCCGGGCTTTTTGGCTTATGGAAACTTTTCTTCAATTG
CTCGCCTGACTGGCTGCCTTCTAGTCCGCACTCTGTTTGACACCTCAATG
ACAACGAACAAGCATCAAAAGGGCAAACATAAGCGCCACCGGTCACAGTC
TCCTATCTTTACTTCAGATGCATCCACACCTTTCAGTACTTGTGCTTCTG
CTCCATCGTCAGACCGAGCAAAGACCTTTCAAGACCCAAGTGATTACCCA
CACGGTGGCGGGAGCGATAGCGACGTGAAAACCTATGCCGATATGTCCGG
CAGCAGCAAGAGAGGGGTTACAATATTACCTGACAGCGCTGCAGATGGCA
TTTCTGGAGGTAAGGATCGTGCTGGTGCCAAGGATGGGAAATCTTTTCCA
CAAGGCAGGCGGAGCTCCATTGGACAGGCCCCCGCACCCGCCATTCACTT
GCACGAATGCATCGCGGGGCTTTTTGAGGACGGTGAACACTCGATTGGAA
GAAGCTACACAGAAGCTGCTCTGCAACACTGGCGCAGTCTTGACACGGAA
AGGAAAGGGCAATTGCTCAGCGGCATAACGAGGGAGGATGTGTACGAGTG
CTTGCGGGACGTCGAGATCACGACACAATTTCCCGTGGAGGGAGAGCCCC
GCGAGGAGACAGGAAAGGCCGTGGCGCAGCAGTTCTTGCACGCAATGGAG
GTCCAGGATGGTGTTTTCCGGTTTCCCTCAGCCCCATCCCTGGAATTTGT
GGGCTTCTTTGCCTCGCTCGAAAGAAACTTGCTCATGTCCATGGAGGAGG
AGAACCTGAGAAATCAAGCAGCCATGGTTGGATGCCTTCTCTTGTGGCGG
CAGTCTTGGTGGATGTACGCAATTATTCCTGTTGTCCTTCTTCTTCTGCT
CGAGAACGCTTGGTGCAGAAAAGCAAGGAGCTGCCTGTGGGAGCTCCTCT
CGCAAAGCTTCCTCAGGCGACGTCGTTGGCAGCCGTATGTGCGATGGAAG
GTAGAGGCTTATAGTGTTGCAGCTCTAAGCATTGCTATGGCATCGCAGAG
CAAGTGGTGTTACAAAGTTACCCTGCTTTTCATAGGCCTGGTGCTCTTCC
TGGACTATCGGTCTGCGTCGTCCACGTCTTTGTACGCTGACTCCAAGGCC
CTCGTCACTGTCCGTCAGCTGCTTCTGCATTTACAGAAATTTCTGCTCCT
CTATCTTGCCTACCATTCCTACGTCGCACTTTTCACAGTCTGCCTCTCCT
ACTTCCCCACTTTCACTGTTCTTCTTCTCTCCAGCGTCTACTTCCTCGCT
GGGCTGGGCATCTCTCTTTTTTGGCAAATTGTGCACGACAAGCTCTTATC
CTATTTCCCCCGCTGGCGGGATAGTTTAGACGCATGGTGGCAGGACGGGC
GAGATGGGCTGAATCGAGCTATGGTGCTGGCGCTGATTGCCGTCACCGTT
ATACCCTACACATTTTACTCGAGCTGGAACACAATTCCAGCTTGGCGGGG
AACCTTCTGGCGATTTTTGAGCGTGATGGTGGTGACCAATTTGGCTTCGG
TTGAGGATCTGAAGCGGACCTACAATGCAGGAAAAGAGTCAGCAAGAAAC
GTAATGTACCGCATGAAGCGAGGGCTCAAGAGATGGAGTGCTTTTTCACG
AGATGGGAATAAAGCGCCCAAAACGTGTCGGAAAGCCGGAAAAATGGATT
AA

Synonyms

Publications