EWM26230.1, cds4468 (CDS) Nannochloropsis gaditana

Overview
NameEWM26230.1
Unique Namecds4468
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:689580..691331 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26230.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g10.7521.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:689580..691331 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26230.1 vs. NCBI_GenBank
Match: gi|585108229|gb|EWM26230.1| (hypothetical protein Naga_100025g10 [Nannochloropsis gaditana])

HSP 1 Score: 1207.59 bits (3123), Expect = 0.000e+0
Identity = 583/583 (100.00%), Postives = 583/583 (100.00%), Query Frame = 0
Query:    1 MTAGSSTQHFHRCFGGKRGAAPGFLAYGNFSSIARLTGCLLVRTLFDTSMTTNKHQKGKHKRHRSQSPIFTSDASTPFSTCASAPSSDRAKTFQDPSDYPHGGGSDSDVKTYADMSGSSKRGVTILPDSAADGISGGKDRAGAKDGKSFPQGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFPVEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADSKALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASVEDLKRTYNAGKESARNVMYRMKRGLKRWSAFSRDGNKAPKTCRKAGKMD 583
            MTAGSSTQHFHRCFGGKRGAAPGFLAYGNFSSIARLTGCLLVRTLFDTSMTTNKHQKGKHKRHRSQSPIFTSDASTPFSTCASAPSSDRAKTFQDPSDYPHGGGSDSDVKTYADMSGSSKRGVTILPDSAADGISGGKDRAGAKDGKSFPQGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFPVEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADSKALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASVEDLKRTYNAGKESARNVMYRMKRGLKRWSAFSRDGNKAPKTCRKAGKMD
Sbjct:    1 MTAGSSTQHFHRCFGGKRGAAPGFLAYGNFSSIARLTGCLLVRTLFDTSMTTNKHQKGKHKRHRSQSPIFTSDASTPFSTCASAPSSDRAKTFQDPSDYPHGGGSDSDVKTYADMSGSSKRGVTILPDSAADGISGGKDRAGAKDGKSFPQGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFPVEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADSKALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASVEDLKRTYNAGKESARNVMYRMKRGLKRWSAFSRDGNKAPKTCRKAGKMD 583          
BLAST of EWM26230.1 vs. NCBI_GenBank
Match: gi|669141594|ref|XP_008606359.1| (hypothetical protein SDRG_02542 [Saprolegnia diclina VS20] >gi|530741643|gb|EQC39885.1| hypothetical protein SDRG_02542 [Saprolegnia diclina VS20])

HSP 1 Score: 85.8853 bits (211), Expect = 3.066e-14
Identity = 99/396 (25.00%), Postives = 169/396 (42.68%), Query Frame = 0
Query:  147 KSFPQGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFPVEGEP-----REETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADS----KALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYF-PRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLA 532
            K  P GRR     + AP        +G  E G + IGR  T+  + HWR L ++ K  L+ G+  +++ + +R V    Q+P    P        T   V   FLHA+E  DG        S+E +G   +LER LL ++  +++  + A+    L+W  SW    +   +L+L      C   R+     L   FL       +V W    ++    ++ +   S   +    + + +VL L +  ++  + YAD      AL  +   L  L K +L+Y  + SY +L  V   +F T   L L+SV F   LG+++  ++     L    P + ++   W +  R     A+   L+ V V     Y++W+    W   F  F+ ++ V  L+
Sbjct:    8 KRRPTGRRPEKASSDAP-----PPPSGHAEMG-YEIGRGRTDV-VGHWRDLTSDEKCDLM-GLDEDEIDDAMRLV--VQQYPQLDAPLPSSVDPATTAMVQAMFLHALETCDGKLILEHV-SIETIGVLVALERKLLYAVIGKDMHRKCAVTVLYLVWTSSWPYLGVAGYLLVLFSNLGPCTWLRNTTCAYLDAFFLHGPD-PLHVEWY---FNSYLTALLLLYTSHDAHVAVYIILAIVLALPFGVSALKNSYADGADDHSALDKITSALSLLNKLILVYYCWSSYSSLLMVAALFFDT-AALSLASVSF---LGVAVVLELAGRAFLRIVPPAYVEAYTEWKEQSR---WHALGAGLVPVAVAAIVLYATWD----WTSMFGGFVRLVTVLALS 377          
BLAST of EWM26230.1 vs. NCBI_GenBank
Match: gi|813181800|ref|XP_012206158.1| (hypothetical protein SPRG_10015 [Saprolegnia parasitica CBS 223.65] >gi|641529009|gb|KDO23207.1| hypothetical protein SPRG_10015 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.7886 bits (177), Expect = 5.797e-10
Identity = 98/400 (24.50%), Postives = 168/400 (42.00%), Query Frame = 0
Query:  147 KSFPQGRR--SSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFP-----VEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADS----KALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPR-WRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASV 534
            K  P GRR   +  + P P        +G  E G + IGR  T+  + HWR L ++ K  L+ G+   ++   +  V    Q+P     +       T + V   FLHA+E  DG        S+E +G   +LE  LL ++  +++  + ++    L+W  SW    +   +L+L      C   R+   E L   FL+      +  W   +Y  A L +  +  + +   + L    +VL L +  ++    YAD      AL  +   L    K +L+Y  + SY +L  V   +F T   L L+S+ F   LG+++  ++    LL   P  + ++  +W    +     A+   L+ V V     Y +W+    W   F  FL ++ V  L+ V
Sbjct:    8 KRRPTGRRPEKAGNETPPPP-------SGSAEMG-YEIGRGRTDV-VGHWRDLTSDAKCDLM-GLDDAEIAAAMHLV--VQQYPQLDATLPSSVDAATTEMVQAMFLHALETCDGKLILEHV-SIETLGVLFALEGKLLYAVVGKDMHRKCSIAALYLVWTSSWPYLGMGAYLLVLFSNLGPCTWLRNTSCEYLDAFFLQGPD-PLHAEWYFNSYLTALLLLYTSHDAHFTVYIIL---AIVLALPFGVSALQHSYADGVDDHSALEKITAALSFFNKLILVYYCWSSYSSLLMVAALFFDT-AALSLASISF---LGVAVVVELAGRGLLRIVPTAYVEAYTSWKARSQ---WHALGAGLVPVAVAGIVLYGTWD----WTSMFGGFLRLVTVLALSQV 379          
BLAST of EWM26230.1 vs. NCBI_GenBank
Match: gi|813193951|ref|XP_012208416.1| (hypothetical protein SPRG_14068 [Saprolegnia parasitica CBS 223.65] >gi|641526478|gb|KDO20838.1| hypothetical protein SPRG_14068 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 71.633 bits (174), Expect = 1.136e-9
Identity = 87/364 (23.90%), Postives = 154/364 (42.31%), Query Frame = 0
Query:  180 HSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFP-----VEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQSKWCYKVTLLFIGLVLFLDYRSASSTSLYADS----KALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASV 534
            + IGR  T+  + HWR L ++ K  L+ G+   ++ + +    +  Q+P     +       T   V   FLHA+E  DG        S+E +G   +LER LL ++  +++  + ++    L+W  SW    +   +L+L      C   R+   E L   FL+      +  W   +Y  A L +  +  + +   + L    +VL L +  ++    YAD      AL  +   L  + K +L+Y  + SY +L  V   +F T   + L+SV F   LG+++  ++    LL   P         W++       A+   L+ V V     Y +W+    W   F  F+ ++ V  L+ V
Sbjct:    3 YEIGRGRTDV-VGHWRDLTSDAKCDLM-GLDDAEIADAMH--LVVQQYPQLDATLPSSVDAATTAMVQAMFLHALETCDGKLILEHV-SIETIGVLFALERKLLYAVVGKDMHRKCSIAVLYLVWTSSWPYLGMGAYLLVLFSNLGPCTWLRNTSVEYLDAFFLQGPD-PLHAEWYFNSYLTALLLLYTSHDAHFTVYIIL---AIVLALPFGVSALQHSYADGVDDHSALEKITSALSFINKLILVYYCWSSYTSLLMVAALFFDT-AAISLASVSF---LGVAVVVELAGCGLLRIVPTAYVEAYTLWKERSQW--HALGAGLVPVAVAGIVLYGTWD----WTSMFGGFVRLVTVLALSQV 347          
The following BLAST results are available for this feature:
BLAST of EWM26230.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585108229|gb|EWM26230.1|0.000e+0100.00hypothetical protein Naga_100025g10 [Nannochlorops... [more]
gi|669141594|ref|XP_008606359.1|3.066e-1425.00hypothetical protein SDRG_02542 [Saprolegnia dicli... [more]
gi|813181800|ref|XP_012206158.1|5.797e-1024.50hypothetical protein SPRG_10015 [Saprolegnia paras... [more]
gi|813193951|ref|XP_012208416.1|1.136e-923.90hypothetical protein SPRG_14068 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4479rna4479Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications