rna4474, rna4474 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4474
Unique Name	rna4474
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3137
Alignment location	CM002463.1:677530..679143 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF1997
Orig transcript id	gnl\|cribi\|Naga_100025g15.7530.mrna
Orig protein id	gnl\|cribi\|Naga_100025g15.7530
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:677530..679143 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g15	gene4316	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26239.1	cds4463	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4474	rna4474-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:677530..679143-
coding sequence from alignment at CM002463.1:677530..679143-

mRNA sequence

>rna4474 ID=rna4474|Name=rna4474|organism=Nannochloropsis gaditana|type=mRNA|length=3137bp
TTCTACAGTTGCGTCTGGAAAGGGCGTCTGAAACGCTACTGCTGCAGAGC
TCGCGTGGTGAGGGAAAGGCGAAGCATTCTGGCAGCTTAGCTGCCACAAG
GCTAGGGGCTACCAGGAGAAAAGACAGTGCTGTCAAGCCACCATCATGTC
CAATGCTTCGCAATCACGTATCTTAAGCAACAAAACCAAACCGTCTCCTC
TGATTGTTGGATTGTCGCCCGTGTCTGCGCCGCAGCTCGAGCGCACGCCC
ACTTTGTTTGACCACCTGCACTTGGAGCCCCACGAAAAAGTGAATCACAA
GACCTTTCAGCATGGGGTGCGGGTGCCAGACAAGTCGGAGAGTCAACGGA
AACTCATCGAGCTCGCCCTCCATCAAAACTCCCTCTTCACGTGCTTGGAC
GAAGAGCAGATTGGCAAGTTTGTCAAGGAAGCCCGGCTTGTGGAGTTCGA
TCCTGGAGAGGTGGTTTTCGTGCAAGGCGAGAAGGGGTATGACTGCTTTA
TTATTGACGAGGGCGAGGTAGAGATCATGGACGCGTTGGAGGACGGCTCC
TTTGATCCTTTTTTGAGCAAGGGTCGGGGGGAAATTTTCGGAGACGGCTC
TATGATATTCCATCGCCGACGTTCGGCGACCGTCAAAGCCAAACAAAAAG
TGCGGACTTGGGTCGTGGACGACGAGGTGTTTGTGGAGAAAATTCTTCAC
AGCGCAAGGATTAAGGCATTGTTCGACAAATACGCGAGCTTGAAAGACCC
ATCTGACCCCAACGGGGACGCCGTGATGACCATGGACGACTTTGTACGCT
CTTGCAACGACACGTCTGGCATCGATGTGATCAAGTACAGCCAACTTCGC
TCCCTCTACAGAATCGTGCGCGGTGACCAGGAATTCGTGCGGTTTAAAGA
TTTCTCCCTCTTCAACATGTTCATGACTCGGCCCGACCCCGAGTACGACA
TCGCCTTTCTCCTTTTCGACCGGAACAAGCAGGGCTTTCTGACCAAGGAG
GACGTGCTTCATTTCCTTTCCACCCACGTGGGAACCGCTTTTGACAAGGA
CTGCGATTTGATGAAGAGGTTCTTTGGCCCAACGGGCAAGAAACGCGTGC
GCGTGGACGACTTTTCTTTGTTTTTTAATAAGCTACAGAACGAGATGACA
CAGCAGGCTTTCCTGCAGATGGACCCTGATGGCAATGGCTGGGTCTCCTT
GGAAGACTTTTACCAGCTTCTCTCCAATTTTGGCCGGCGGCAACTTCCGG
AGTCCCTTGTCGCCCGAATAAATGCGACCCGGCGCGGACGTTCGGTTTCC
TTTTTCGATTTCTTGGCCTATCAAACGATACTGAACAACCTCCCTTCCCT
CTGCACCACGATTGCCACTGCCGCGGATATCAAGTCGGGGCCTCTGAGCA
AGGACGATTTCAAAGTCGCGTGCAGGGTGCTAAACCGGCGTTTTTCTCGC
GCAGAATCAGACGTTGTTTTTGAGCTTTTTGACCTCAATGGGGACGGATA
CATCTCCCCCGACAACTGCAAGACGGTGCTCGGGGCGTCTTACATCAAGG
AACTGCGAGCCATCGTCGGTCGCGGGGGAGCCGTCACCTTTGCCCCGCCG
CCCGGCTACACAGTGGAGAAATACTCCTCGCGCCATAACGCGCACATTGA
TGACGCAGAGGTGGTTCCCAAGACGGTCATGGAGCGTGTATTTCAGTTTT
TGCAAGGCTTCTCTCTTGGTGCGATTGCGGGGGGTATCGGAGCCTTTGCG
GTCTATCCCCTCGATCTAGTCAAGACGCGCATGCAAAATCAACGCTCGGG
GAAAATCATGCCGGGTGCGGTGCAATACAAAGGAAATATCGACTGTTTTC
GGCAAGTGCTGGCACGAGAAGGGATATTGGGCTTCTATGGAGGGCTGTTG
CCCCAGCTGGTGGGAGTGGCCCCGGAGAAGGCGATCAAACTGGCAGTGAA
CGACTTGCTCCGCGACATGTTTACGAATCGAGACAAGGTGACAGGCCAAG
ATTCCATCTACTTTCCACTCGAGGTGCTGGCAGGGTGCGGGGCAGGTGCC
TCCCAGGTTGTGTTCACAAACCCTCTGGAGATCGTCAAGATCCGGCTGCA
AGTGCAAGGCGAAACGGCGCAAGTGCTGGTGGCGCAAGGAATGAAGGCGC
CGACGGCAAGTTCCGCCTGGCAAATTGTGAAGGAGCTGGGTTTCGTGGGG
CTGTACCGTGGCGCCTCCGCGTGTTTCTTGCGTGACATTCCCTTCTCCGG
GATCTATTTCCCTGCCTACGCGGCAGCCAAGCGATACGTCGCGGGGGACG
CCGACAAGATTCAACCCTACCATTTGCTGATCGCCGGTGCGATGGCCGGC
GTGCCTGCAGCTTCCCTGACCACCCCCGCAGACGTGATCAAAACCAGGTT
GCAAGTCAAGCCCCGCCCTGGGGAAGTGGCTTACGAGGGGATGGCGGATT
GCGTCGCAAAAATCTACGCCGCTGAGGGTATCACGGCCTTTTTCAAGGGG
GCCATTATGCGGGTCATGAGAAGCAGTCCTCAATTTGGCGTCACCCTACT
AGCCTACGAAGGCCTCCGCTCTTTTATATCTCCTACGATGGAGCCTCGTC
CGCCCACGAACGCGCCCATTTCGCAGAGTGACTACGACGCTTTCCGCAAA
GAGCACCTGTCATTGATGGCGGACAACGTCTCGAACTTGGTATGGGGGTC
CGAGAAATGGTGACGAGGCAATAGAAGGGACTGCTTTAGACATGGAGGAG
ACGGAGTGAGAGGGTAGGAGAATGCGGGTGTTGTGGAGTGCGTTGTCGTG
CCACTTGAGATCATGGGCGCAGTTTTTGCATTGAACAGGAAAGGTGGTGT
TTCTCTGAAACAATGAACACGGAATGAAAGTAGTTTTTCTAGGCGTAGCA
TGTGCTTTACACTAAATCTTTTACATACATTCATCTGGAAAGCATGGCGC
GCCTAGGGGATAAGCTGGAGGTGAGGCCGAGTGCGATTAAAGAAAAAAGC
CGAGAGAGGAGGGACCACCTTTATGGCACTACATTTCCTCGAAAATGCTC
CGAAACCTCTCCGTGGGAGTAGAGCGGTACCTCTGTGATCGACGCATTTC
TTTCCTGACAACACGACAAGGAGAAGACAGAAACGTC

protein sequence of rna4474

>rna4474-protein ID=rna4474-protein|Name=rna4474|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MLAAFPGAMLGALTISILLLSSVADAFRLASPFTVKAARVVTAADMDRWR
SPLLHRVRSSRGNSEASSPKEFFRLARGKMEFGTVDEVELLLWDEPALIR
RYLTESPDRVLLATWDAELVDRRARDVFRLTTKPMSFVHLSLQPSIDVRL
TAIPPEAGREEGAPESGGHLLSVESLGHSMNGLEQILGQRFAESLRIDVT
GKLRAHVPPARPGDSKGRGPVRLVGEVVFVTSGQLPSLLSLTPRPVLESA
AIAINRRIMSYAKGKFVKNLAKDFNRWSASALEAG

mRNA from alignment at CM002463.1:677530..679143-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4474 ID=rna4474|Name=rna4474|organism=Nannochloropsis gaditana|type=mRNA|length=1614bp|location=Sequence derived from alignment at CM002463.1:677530..679143- (Nannochloropsis gaditana)
TTGGAAAAATACGTACCACCGCCGGGAGCACAGCGCGACTTGGCCAAATA
CAGCGTGCATGTCCATGATGGCGCATAGATTTTCATTCATTTTGGTTTTC
CTGGCATGTTATCTCTCATTTAGGCCACGGGTGGGCAGGGCCCGTTCAGC
TTGCCTCTGATGCTTGCGGCTTTTCCAGGAGCGATGCTCGGAGCCCTTAC
AATTTCGATTTTGCTCCTAAGCAGCGTGGCGGACGCCTTTCGTCTTGCCA
GCCCTTTCACAGTCAAAGCAGCCAGAGTCGTCACAGCCGCAGACATGGAC
AGGTGGCGGAGTCCACTTCTCCACCGAGTAAGGAGCAGTCGCGGCAACAG
TGAAGCTTCTTCCCCGAAGGAATTTTTCCGACTCGCCCGTGGGAAAATGG
AGTTTGGGACAGTCGATGAAGTGGAACTTCTGCTATGGGACGAGCCTGCC
CTCATCCGTCGGTACCTCACGGAATCACCCGACCGGGTCCTCCTGGCCAC
CTGGGACGCAGAACTAGTGGATCGCCGGGCCAGGGATGTATTTCGTCTCA
CCACGAAACCCATGTCCTTCGTGCACTTGAGTCTACAACCCTCCATCGAC
GTACGCCTCACGGCCATACCACCGGAAGCGGGAAGAGAGGAGGGCGCGCC
GGAGAGCGGGGGACATCTTCTGTCGGTGGAGTCCTTAGGGCACTCCATGA
ACGGATTAGAGCAGATTCTCGGACAACGCTTCGCCGAATCTCTACGGATC
GATGTCACGGGAAAATTGAGGGCCCACGTCCCTCCCGCCCGCCCTGGGGA
TTCGAAAGGTCGAGGACCCGTGCGCTTGGTGGGGGAGGTGGTGTTCGTGA
CCTCGGGTCAGCTCCCGTCCCTCCTGAGCCTGACCCCCCGCCCCGTCTTG
GAAAGCGCGGCTATCGCGATCAATCGGCGCATCATGAGCTATGCCAAAGG
AAAATTCGTGAAAAATCTGGCCAAGGACTTCAATCGGTGGTCGGCTTCTG
CTTTGGAGGCGGGGTAGGGGGGAGCGGCCTTACAAGGTCCTGGAAGTTCT
CGGGAGGGAAAACAAAGCACTACATTTAGTAGCGAGTCCTTTGCAAATAG
TCGTGATGATAACGTTTCCTTCTTGGGACGGCTCTGTGGGTGGGAAGATA
AGCTGGCGGCGTGCATGACCTGGAGGGGTATAGTGGGGATAGGCCCATGC
AGCGTCCTCTGACTCCACGGCCTTGGGGGAGGCCAAGAGGACGTTTGAGG
ACTGGGTGCATCGACAAACGCCGCGTTTGAATCGTCGTTAATGAAAGCCC
ACACAGGTTGTGTAGCTTGACATACTGTACATAGATAGGGCAATAAACGC
TCCAAAACGATGGAGAGGCTACAGTCGGGAGACGCGCTACGATAGGAGCA
CGCCTGTCCGTTCGAAAAGACACGTGGGAATTTTTACGAAAGTCCAGTAA
TGAATAGGAAGGATGGCCTTGAGCACCTGGAAAATACCCAAAGCAATGAA
TTTGAAGCATTTGCACCCCCTCGGTATTCAGTGATGTTGACGTTTCTGTC
TTCTCCTTGTCGTGTTGTCAGGAAAGAAATGCGTCGATCACAGAGGTACC
GCTCTACTCCCACG

Coding sequence (CDS) from alignment at CM002463.1:677530..679143-

>rna4474 ID=rna4474|Name=rna4474|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002463.1:677530..679143- (Nannochloropsis gaditana)
ATGCTTGCGGCTTTTCCAGGAGCGATGCTCGGAGCCCTTACAATTTCGAT
TTTGCTCCTAAGCAGCGTGGCGGACGCCTTTCGTCTTGCCAGCCCTTTCA
CAGTCAAAGCAGCCAGAGTCGTCACAGCCGCAGACATGGACAGGTGGCGG
AGTCCACTTCTCCACCGAGTAAGGAGCAGTCGCGGCAACAGTGAAGCTTC
TTCCCCGAAGGAATTTTTCCGACTCGCCCGTGGGAAAATGGAGTTTGGGA
CAGTCGATGAAGTGGAACTTCTGCTATGGGACGAGCCTGCCCTCATCCGT
CGGTACCTCACGGAATCACCCGACCGGGTCCTCCTGGCCACCTGGGACGC
AGAACTAGTGGATCGCCGGGCCAGGGATGTATTTCGTCTCACCACGAAAC
CCATGTCCTTCGTGCACTTGAGTCTACAACCCTCCATCGACGTACGCCTC
ACGGCCATACCACCGGAAGCGGGAAGAGAGGAGGGCGCGCCGGAGAGCGG
GGGACATCTTCTGTCGGTGGAGTCCTTAGGGCACTCCATGAACGGATTAG
AGCAGATTCTCGGACAACGCTTCGCCGAATCTCTACGGATCGATGTCACG
GGAAAATTGAGGGCCCACGTCCCTCCCGCCCGCCCTGGGGATTCGAAAGG
TCGAGGACCCGTGCGCTTGGTGGGGGAGGTGGTGTTCGTGACCTCGGGTC
AGCTCCCGTCCCTCCTGAGCCTGACCCCCCGCCCCGTCTTGGAAAGCGCG
GCTATCGCGATCAATCGGCGCATCATGAGCTATGCCAAAGGAAAATTCGT
GAAAAATCTGGCCAAGGACTTCAATCGGTGGTCGGCTTCTGCTTTGGAGG
CGGGGTAG

Synonyms

Publications