rna447, rna447 (mRNA) Nannochloropsis gaditana

Overview
Namerna447
Unique Namerna447
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3046
Alignment locationCM002455.1:1113976..1116921 +

Link to JBrowse

Properties
Property NameValue
Productputative atp-dependent rna helicase ddx31
Orig transcript idgnl|cribi|Naga_100003g34.1867.mrna
Orig protein idgnl|cribi|Naga_100003g34.1867
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1113976..1116921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g34gene431Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna447rna447-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30350.1cds447Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna447 ID=rna447|Name=rna447|organism=Nannochloropsis gaditana|type=mRNA|length=3046bp
CCAACTCCACATGATACTTTATGCCCGCTTCATCCCGCGCTTTCCCACCC
CTTGCACCGTCCACAGCTGTACAATGAAGAAAAAAGCAGCATCGCGTGAC
CAGGGGCGATTGGGACGTGCAGTGCCCGCGAAAAAAAGCAGTCTAGTGAG
GCGGAAGGGGCCTGGACCCGGTGGCCCCGGAAGTGCCACTCCCATGCCTG
AGCAGCTCCCGATTGAGAATGACGAAGATGACACCATGGAAATACACGAG
GAAGATCGTGCGTTCGTTGAGGAGCACTCTAGTTTTGCTGCTAGCTTTCT
TGACGCTGATCCTCGGAGTCCCACCCCCGCGGGGTCGGCCGGAAAAAGCA
AGCGAGCGCATACCGCCCCTGAGGACAACAATGGCGGCGTTGAGGTGCCC
ATCGAACAGAAGTCCATGCGGCGTAAAGCATCGACATTAGGATGGAATAC
GGCGCGCGGCATTGGGCACAGGGTGGTGAAAGAGCGACTACCCACCAAGA
CAATCGATGGCAAGCTTCACTTCCGTCTAGAGGAGGTGGAGGAAATAGTC
GAAGACACGCAGAAAGTAAATATTGTTGTTTCTGCAAGAAAGAGTAAGGA
AAAAAAAGATAACAGAGGGGGAGAAGTGGAACAAGGGGAGGAGAAAAAGG
AGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGATGTCGAAGATGACATGAACGTTGCAATGCATTCCGA
AACCTCGGACCCAGAAGTCTTGGGTGACAGTAGACCGAAGAACGGACGAG
AAGCTAAAAATCGTAGTGGCAGCAGGGTAGTGTCGGGACAAATTGCAGCG
GAGGCTGAAAGTCTGTCCGTCGAGGCATTCGGAGGGGATGTCCGAGCGAT
GCGACGTGCCCGACTAGAGTTGAAAAAAACAGAGATTGCCACCTTGTGCG
AGGCCATCTTGGAAAACCCCGAGGGAGGGCTCTTAGGCCGGTCCGCCGGG
GGCGGATGGAGGGGCAGGGGCAGCCGAATGGGGGCTTTGCTCGGCGCTCT
GGAGGATCAGGACAAGCAAGTCCAAGTCTGGGCGATGGCCTCACTGGTGG
CGGTCTTCAGAGACCTGGCCCCCGCCTACCGGATCCGCCTGCCCACGGAG
AAAGAGTTGCAGGTGAAGGCGTCGAAGGAAGTCAAGCGCACGCAGGAGTA
CGAGCGGGTCTTGCTTGCCAGCTACCAAGCCTACCTCAAGTATTTGGAGC
GGACGAGTCACGCAGGCCGCGCGTCGCCCTCTGGAAAGCCCCAGGTGTCC
CCAGCGGGGAGGGAGGTCCGTCGGAGCGTGGCAGCCAAGTGTCTGTGCGA
GCTTTTGACGGCGCTGTCTCACTTCAACTTCACGACGAGCGTGCTGACCG
CCGTCATCCGCCTCGGCATGGGGCCCGATCCTCTTACCCGGACGATGGCA
GGGGCGGCGGTGCGGCGCCTTTTGGAACGCGACCAGCAGGGAGACGTGTC
TCTGTCCGCGACTAAGTTGATATGTAAGGAGATGCAACATCGACGGTTGC
AGGCGCCGGAAGACATGCTGCGGGCCCTGCATGCGCTTAAACTGGTGGTG
AAGGAAGACGAGGCCGTGGAAGTGCTACGAAAGGCGCGCGTGCATGCAAC
GAAGCGGAAGAGCCAGCAGCTGGAGGAGAAGGAGGAGGACGGAGAGAGTG
AAGTGCGAACGGGGTTGAGGGAGGCGGAGGCGCGCGCAGACCCGGAATTG
CGGGCACGGTGCCAGTCCGAGTCCTTGCAGGAGGTTACAATTTTGTACTT
TCGCGTGCTGAAACAGGCCAGGAAGCCGACCTTGCTGCCCGCAGCGCTGG
AGGGGTTGAGTCGCGTAGCTCATCTCATAAATTTGGACACCGTGGTGGAC
GTCTTGGAGGTGTTGAAAGACATGCTGGATCCGACCCGAAATTTGCCCCT
GGGAGCGAGCCTGCACGCGGTACTCACGGCCCTACGCACGTTGCAAGGTC
CGGGTCGAGAGCTCAGGGTCGACGATAAAGCCTTCTTGACTTTTTTGTAC
CAGCTGTTGGGCCGCGTCGGGATGGGCCTTGCCGCCGACAGCCACCAGGA
CGAGAAGAGGACTGATGCCCGTTCGGGCGTCACCATCTTCCCGCTGCTTG
TTACGTGCCTACGGAAAGCCCTCTTGGAACGGCGAGAATTTTCTCTGGCG
CGTGTTGCTGCCTTTTACAAGCGCCTTCTGGGCCTCGCTTTGCAACTCAC
CTCCCCGCAGGAGTCACAGGTCGTGCTGGGGATCGTCAAGGAGCTACCGA
CTCGCTACCCGGGCCTGGAACAAATGCTCGACGGAGAGACGGACCGGGTT
GCGATGGGCGTGTATCGGCCTGATGCCGTAGAGCCGGAAATGAGCAATCC
GCTGGCTTCGGGTGCCTGGGAATTGTCGCTTCTCAAAGTTCATCATTTTC
ACGCGGGAGTGCGGAGGGCAGCAACAGAAGCGATCACGGCAGCAACGGCC
GCGGCAGCCTCGACGCAGACTGCCACGCCATGGTCGTCCTCGTCATTTAG
AGTTCGCGATTATTTTAACAAAGCTGGCAAAGGTTTGGAGAAAGAGGTGG
CGATGGATGATCACTGGGACTTCTTGAAGCTCGGCTTCGGGGGAATGTTT
ACTCAACTGCCGCGGCTTAACCCGTTGCATGCCATGATACGTCGAGCTGC
GAGAGAAAAGCGAGGGCAGCGCACCAGGCTTTACTTCATTGAGCGATACG
GCAATGTAGGGGCAAGTGAGGGAGAAGGGAGGGATTACAAGTCGCAATTT
TGGGGAGAAAGTACGCATTCGAGACAATCTCTGAACGAAGATTTGAAACG
CACTGAAAACGTCTCTTTTCAAAAGTACTTCCGCGACACTCGGGCGCACA
AACGTAAGCTATCGTTGTGTCGGGAGTTACAACGCTCACGGGCAATTTTG
AAGATGTATGCGTCTCGCCATTCCCAAGGGAAGCAAGCTGCCTTAAATTG
AGGCAAAAGTAAACAACGAAAAATCAAACATTTTTTACAAAAAAGC
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protein sequence of rna447

>rna447-protein ID=rna447-protein|Name=rna447|organism=Nannochloropsis gaditana|type=polypeptide|length=981bp
MELNIVEIPKLNATRSQNGEKPLRFVKRHRFKAKRERQGDTKVGLGSLRI
KEAPLVGPEPTASGQKPRSVKINKPQDLSSTALVLGKKRKLRGDLLSEQQ
EHEVDGPLKRRTISHSMHPTSRTDVPVVEGHEGKEMKSRLTDSASTPVAL
GRAPSSDSLVRVSENEEGKRTAHCRLGIVSTTSMPRPSKPSKDEDDKTAP
TKTRPPTKASTSREAIDPSSRESSTAIDLGPGGSRCGSPFTPLCTGYSRK
NPAPASAARLDEFHIKPSELDMVTAAVPTGRDKEGATASTSDPASARKRK
ISKHIFTATPFSGLGLHEHLIRVLEAPREHHGLGLRVATRVQSAALPALL
QSARPNALICSETGSGKTLAYLLPILQHLQALQPRPSRAEGTRAIIVAPT
RELSHQIYDVLSLLVRAFIWIVPGLVSGGEKRKSEKARLRKGVTVLVGTP
GRLLDHLQNSQAFRHEATEWLVLDEVDRLLDLGFEAQVREIVEKLRTGRE
GGSSGQEEARARVQVLAASATLTAALDKFGCELLGQHVRIDAKTGTVVDV
DVAATPGGGEMGATDGEGGGQDGRPIGGKDDAVEGRKGENLPGDATPNAT
SSEMSDHFTTPVQLIQQYMVVTCKLRLPALISFLRVHAKSHKTVIFCSTC
DSVDFHYALFETRLEGNERGADKIGKSSHTLPSEDAAEQPLLGSDMPVYR
LHGNIPQAARLLAFKTFRQAPRGVLFCTDVAARGLDLPAVDWIVQYDPPT
ETAEYVHRVGRTARRGRQGHSILFLLPSEQGYLNVLKNRGITLTPLSLQQ
TLFEATPARFKGRFRGPEEVFCLDIQQQLERAVATAKEERGMNERKGNAS
SPLLALGRKAFGSFVRAYATHPADLKPIFAVRALHLGHVAKSFALKEPPT
SLKVGKEVMKISSQRQSASEHDQNGKSKHGGDDLRDTDSETVRKMATKNT
QKAFQSPRKQSTGSKRRSRTAFSSVSEFSAG
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mRNA from alignment at CM002455.1:1113976..1116921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna447 ID=rna447|Name=rna447|organism=Nannochloropsis gaditana|type=mRNA|length=2946bp|location=Sequence derived from alignment at CM002455.1:1113976..1116921+ (Nannochloropsis gaditana)
ATGGAGTTAAATATCGTTGAGATACCGAAGCTCAATGCTACTCGTAGCCA AAACGGAGAAAAGCCTCTCCGCTTCGTAAAGCGGCATCGTTTTAAGGCCA AGCGCGAGCGCCAGGGGGATACTAAAGTGGGTCTGGGCAGCTTGCGCATC AAAGAAGCTCCGTTGGTTGGTCCCGAGCCCACAGCATCAGGCCAAAAACC ACGTAGCGTGAAGATAAACAAGCCGCAAGACTTGTCGTCTACAGCTTTGG TTCTTGGCAAAAAACGAAAACTAAGGGGAGACCTGCTGTCCGAGCAGCAG GAACACGAGGTGGACGGTCCCCTCAAGCGGCGGACAATCTCCCACTCGAT GCACCCAACATCTCGCACAGACGTCCCGGTGGTTGAAGGTCATGAAGGCA AGGAAATGAAGAGTAGGCTTACAGATTCGGCCTCTACGCCTGTTGCCCTG GGACGTGCGCCGTCCTCGGATTCCTTGGTGAGGGTCTCCGAGAACGAGGA AGGCAAGCGGACTGCGCATTGTCGTCTTGGAATTGTGTCTACGACATCGA TGCCGAGGCCGTCAAAACCCTCAAAAGATGAAGATGACAAGACTGCCCCA ACCAAAACGCGCCCACCTACAAAGGCCAGCACCAGTCGCGAGGCGATCGA TCCCTCTTCACGCGAATCGAGTACGGCCATCGACCTGGGACCTGGGGGTT CAAGATGTGGTTCGCCATTCACACCACTGTGCACAGGATATAGTCGTAAA AACCCTGCACCTGCCTCAGCTGCCCGCCTGGATGAGTTCCACATCAAACC CTCCGAGCTCGACATGGTCACTGCCGCAGTGCCTACCGGCAGAGATAAAG AAGGCGCTACAGCTTCTACCTCCGACCCAGCGTCTGccaggaagagaaaa ataaGCAAACACATCTTCACAGCCACTCCCTTCTCTGGCCTTGGCCTGCA CGAGCACCTAATCCGCGTCTTGGAGGCCCCTCGGGAGCACCACGGCTTGG GACTGCGTGTGGCCACCCGCGTCCAAAGCGCTGCTCTCCCCGCACTGCTT CAATCCGCCCGCCCCAATGCCCTGATCTGCTCTGAAACGGGGTCTGGTAA AACCCTTGCCTACCTGCTTCCTATCCTGCAGCACTTGCAGGCGCTACAGC CACGGCCttcgagggcggaggggacgcGTGCCATCATTGTGGCGCCGACC CGGGAGCTCAGTCACCAGATATACGACGTCTTGTCTCTTCTCGTCCGAGC TTTCATTTGGATCGTTCCAGGGCTGGTGAGTGGTGGAGAGAAGCGCAAAT CGGAGAAAGCGCGCCTGCGGAAAGGCGTGACGGTCCTGGTGGGGACACCC GGGCGGTTGTTGGACCACCTGCAGAACAGTCAAGCCTTTCGGCACGAGGC CACGGAGTGGctggtgctggacgaggtCGACCGGTTGTTGGATTTGGGAT TCGAAGCGCAGGTTCGTGAAATTGTGGAAAAGTTGCGGACGGgccgagag gggggaagcagtGGGCAAGAGGAAGCCAGGGCTAGAGTACAGGTGCtagc cgcctccgccaccctgACGGCCGCCTTGGACAAGTTTGGGTGCGAGCTAT TGGGTCAGCATGTGCGGATCGATGCCAAGACTGGAACGGTGGTAGATGTC GATGTCGCCGCGACtcccggagggggggaaatgggggCGAcagacggaga gggagggggccaagACGGGAGGCCGATAGGTGGGAAAGATGATGctgtgg aagggaggaagggtgaaAATTTACCAGGAGACGCCACGCCTAACGCCACT AGCAGTGAGATGAGCGATCATTTCACGACACCCGTTCAGCTGATACAGCA GTACATGGTTGTCACTTGCAAGCTTCGCCTGCCTGCCCTCATATCCTTCT TGCGTGTGCATGCCAAATCCCATAAAACTGTCATTTTCTGCTCGACCTGT GACTCTGTCGACTTCCACTACGCCCTTTTCGAGACCAGGCTAGAGGGAAA CGAAAGAGGGGCAGATAAAATCGGGAAATCCTCACATACGCTGCCgtcgg aggacgcggcggaaCAGCCATTGCTGGGCTCGGATATGCCCGTCTACAGG TTGCACGGCAATATTCCCCAAGCTGCGCGCTTGCTCGCATTCAAAACCTT CCGACAGGCACCCCGCGGAGTCCTGTTCTGTACTGACGTGGCGGCTCGAG GTTTGGACTTACCTGCGGTCGATTGGATCGTGCAGTACGATCCTCCCACA GAGACAGCGGAGTACGTGCACCGGGTGGGCCGGACGGCGCGGCGAGGTCG TCAAGGACATTCGATTCTCTTCCTCTTACCTTCTGAGCAGGGTTACTTAA ACGTACTTAAAAATCGCGGAATCACTCTCACGCCCTTGTCATTGCAGCAG ACGCTGTTTGAGGCCACGCCTGCGCGTTTTAAGGGACGCTTTCGGGGGCC TGAGGAGGTCTTCTGCCTGGATATCCAGCAACAATTGGAGAGAGCTGTCG Ccacggcgaaggaggagagaggtatgaatgagaggaaaggaaatgcttcc tcgcctttgCTCGCGCTCGGACGCAAGGCGTTCGGCTCTTTTGTTCGGGC CTACGCCACTCACCCGGCTGACTTGAAGCCAATCTTTGCGGTTCGTGCTC TACATCTTGGCCATGTTGCTAAAAGTTTTGCACTAAAGGAGCCTCCTACC TCATTGAAAGTGGGCAAGGAAGTGATGAAAATTTCCAGCCAAAGGCAAAG CGCAAGTGAGCATGACCAAAATGGGAAGAGTAAGCATGGTGGTGACGACT TGCGAGACACTGACAGCGAGACAGTCAGAAAGATGGCGACCAAAAATACG CAAAAAGCTTTTCAGTCACCTCGTAAGCAATCAACAGGTAGCAAGCGCAG GAGTCGCACAGCCTTCAGCTCTGTTAGTGAGTTTAGTGCGGGATAA
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Coding sequence (CDS) from alignment at CM002455.1:1113976..1116921+

>rna447 ID=rna447|Name=rna447|organism=Nannochloropsis gaditana|type=CDS|length=2946bp|location=Sequence derived from alignment at CM002455.1:1113976..1116921+ (Nannochloropsis gaditana)
ATGGAGTTAAATATCGTTGAGATACCGAAGCTCAATGCTACTCGTAGCCA
AAACGGAGAAAAGCCTCTCCGCTTCGTAAAGCGGCATCGTTTTAAGGCCA
AGCGCGAGCGCCAGGGGGATACTAAAGTGGGTCTGGGCAGCTTGCGCATC
AAAGAAGCTCCGTTGGTTGGTCCCGAGCCCACAGCATCAGGCCAAAAACC
ACGTAGCGTGAAGATAAACAAGCCGCAAGACTTGTCGTCTACAGCTTTGG
TTCTTGGCAAAAAACGAAAACTAAGGGGAGACCTGCTGTCCGAGCAGCAG
GAACACGAGGTGGACGGTCCCCTCAAGCGGCGGACAATCTCCCACTCGAT
GCACCCAACATCTCGCACAGACGTCCCGGTGGTTGAAGGTCATGAAGGCA
AGGAAATGAAGAGTAGGCTTACAGATTCGGCCTCTACGCCTGTTGCCCTG
GGACGTGCGCCGTCCTCGGATTCCTTGGTGAGGGTCTCCGAGAACGAGGA
AGGCAAGCGGACTGCGCATTGTCGTCTTGGAATTGTGTCTACGACATCGA
TGCCGAGGCCGTCAAAACCCTCAAAAGATGAAGATGACAAGACTGCCCCA
ACCAAAACGCGCCCACCTACAAAGGCCAGCACCAGTCGCGAGGCGATCGA
TCCCTCTTCACGCGAATCGAGTACGGCCATCGACCTGGGACCTGGGGGTT
CAAGATGTGGTTCGCCATTCACACCACTGTGCACAGGATATAGTCGTAAA
AACCCTGCACCTGCCTCAGCTGCCCGCCTGGATGAGTTCCACATCAAACC
CTCCGAGCTCGACATGGTCACTGCCGCAGTGCCTACCGGCAGAGATAAAG
AAGGCGCTACAGCTTCTACCTCCGACCCAGCGTCTGccaggaagagaaaa
ataaGCAAACACATCTTCACAGCCACTCCCTTCTCTGGCCTTGGCCTGCA
CGAGCACCTAATCCGCGTCTTGGAGGCCCCTCGGGAGCACCACGGCTTGG
GACTGCGTGTGGCCACCCGCGTCCAAAGCGCTGCTCTCCCCGCACTGCTT
CAATCCGCCCGCCCCAATGCCCTGATCTGCTCTGAAACGGGGTCTGGTAA
AACCCTTGCCTACCTGCTTCCTATCCTGCAGCACTTGCAGGCGCTACAGC
CACGGCCttcgagggcggaggggacgcGTGCCATCATTGTGGCGCCGACC
CGGGAGCTCAGTCACCAGATATACGACGTCTTGTCTCTTCTCGTCCGAGC
TTTCATTTGGATCGTTCCAGGGCTGGTGAGTGGTGGAGAGAAGCGCAAAT
CGGAGAAAGCGCGCCTGCGGAAAGGCGTGACGGTCCTGGTGGGGACACCC
GGGCGGTTGTTGGACCACCTGCAGAACAGTCAAGCCTTTCGGCACGAGGC
CACGGAGTGGctggtgctggacgaggtCGACCGGTTGTTGGATTTGGGAT
TCGAAGCGCAGGTTCGTGAAATTGTGGAAAAGTTGCGGACGGgccgagag
gggggaagcagtGGGCAAGAGGAAGCCAGGGCTAGAGTACAGGTGCtagc
cgcctccgccaccctgACGGCCGCCTTGGACAAGTTTGGGTGCGAGCTAT
TGGGTCAGCATGTGCGGATCGATGCCAAGACTGGAACGGTGGTAGATGTC
GATGTCGCCGCGACtcccggagggggggaaatgggggCGAcagacggaga
gggagggggccaagACGGGAGGCCGATAGGTGGGAAAGATGATGctgtgg
aagggaggaagggtgaaAATTTACCAGGAGACGCCACGCCTAACGCCACT
AGCAGTGAGATGAGCGATCATTTCACGACACCCGTTCAGCTGATACAGCA
GTACATGGTTGTCACTTGCAAGCTTCGCCTGCCTGCCCTCATATCCTTCT
TGCGTGTGCATGCCAAATCCCATAAAACTGTCATTTTCTGCTCGACCTGT
GACTCTGTCGACTTCCACTACGCCCTTTTCGAGACCAGGCTAGAGGGAAA
CGAAAGAGGGGCAGATAAAATCGGGAAATCCTCACATACGCTGCCgtcgg
aggacgcggcggaaCAGCCATTGCTGGGCTCGGATATGCCCGTCTACAGG
TTGCACGGCAATATTCCCCAAGCTGCGCGCTTGCTCGCATTCAAAACCTT
CCGACAGGCACCCCGCGGAGTCCTGTTCTGTACTGACGTGGCGGCTCGAG
GTTTGGACTTACCTGCGGTCGATTGGATCGTGCAGTACGATCCTCCCACA
GAGACAGCGGAGTACGTGCACCGGGTGGGCCGGACGGCGCGGCGAGGTCG
TCAAGGACATTCGATTCTCTTCCTCTTACCTTCTGAGCAGGGTTACTTAA
ACGTACTTAAAAATCGCGGAATCACTCTCACGCCCTTGTCATTGCAGCAG
ACGCTGTTTGAGGCCACGCCTGCGCGTTTTAAGGGACGCTTTCGGGGGCC
TGAGGAGGTCTTCTGCCTGGATATCCAGCAACAATTGGAGAGAGCTGTCG
Ccacggcgaaggaggagagaggtatgaatgagaggaaaggaaatgcttcc
tcgcctttgCTCGCGCTCGGACGCAAGGCGTTCGGCTCTTTTGTTCGGGC
CTACGCCACTCACCCGGCTGACTTGAAGCCAATCTTTGCGGTTCGTGCTC
TACATCTTGGCCATGTTGCTAAAAGTTTTGCACTAAAGGAGCCTCCTACC
TCATTGAAAGTGGGCAAGGAAGTGATGAAAATTTCCAGCCAAAGGCAAAG
CGCAAGTGAGCATGACCAAAATGGGAAGAGTAAGCATGGTGGTGACGACT
TGCGAGACACTGACAGCGAGACAGTCAGAAAGATGGCGACCAAAAATACG
CAAAAAGCTTTTCAGTCACCTCGTAAGCAATCAACAGGTAGCAAGCGCAG
GAGTCGCACAGCCTTCAGCTCTGTTAGTGAGTTTAGTGCGGGATAA
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Synonyms
Publications