rna4467, rna4467 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4467
Unique Name	rna4467
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2604
Alignment location	CM002463.1:656550..658039 +

Link to JBrowse

Properties


Property Name	Value
Product	ribonuclease h
Orig transcript id	gnl\|cribi\|Naga_100025g22.7548.mrna
Orig protein id	gnl\|cribi\|Naga_100025g22.7548
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:656550..658039 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g22	gene4309	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4467	rna4467-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26257.1	cds4456	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:656550..658039+
coding sequence from alignment at CM002463.1:656550..658039+

mRNA sequence

>rna4467 ID=rna4467|Name=rna4467|organism=Nannochloropsis gaditana|type=mRNA|length=2604bp
ATGACTCGCTGCTGTGTCGCCCACTCCCCCTCTCTGGACAAGTTGACTTC
CGGTTTCCAAGTTCACTTGAACATATGCACCACCGTCACTGCAGGGATGC
CGGCCATGGATGAACGGCGCCAACGGCTGCGTTGCGGCGGTCGCTTGCTT
CTCTTCCACTGCGTCCTTGCCGTCATAAGTCCCGCAAAGGCTCGCGAGGT
GACCTCTGATCCAATGTTCCGCCCCTTTAATTCTATCGACCGAGCCCACG
CCTGCGACTCTGCTGGTTCATTTGCCGACGCCGCCTACTGCAATATGTCC
TTGTCAATAGACGAGCGCGTGGAAGACCTACTCGCTCGCCTGACGCAGGA
GGAAAAGATCTCCCTTCTCGTGAATGCAGCGCCAGGCATACCGCACCAAG
CCCTACCTGCGTACGAGTGGTGGTCCGAGGCCCTCCACGGGGTCGGCCTC
TCCCCTGGGGTGACATTCGCGCCTCCTACCCCCACCGCCACGTCCTTCCC
TCAGGTGGTCACCACCTCCCAGTCCTTCAATCCGGCCCTCATGCAGGCCA
TTGGGGCCGCCATCAGCACTGAGGGTCGCGCCTTCAACAATGTGGGGCAC
GCGGGCAACACCTACTGGGCCCCAAACATCAACGTCTTCCGCGACCCCCG
GTGGGGCCGGGGCCAGGAGACGCCGGGGGAAGACCCCTTTCTATCGGGCG
TGTACGCGGCCAGCTTTGTCCGGGGAATGCAGGAGGGCGAGGACCCCCGG
TACTTGAAAACCTCTGCCTGTTGCAAGCACTTTGCGGCCTACTCGGTGGA
AAACCTCTACAATGGCACACACCGCCACAATTTCGACGCGCGGGTCACGC
CGCAGGACATGGCTGACACCTATCTCCCTGCTTTCGAGGCCTGCGTGAAG
GAGGGTAGGGCCTCGGCACTCATGTGCTCGTATAACGCCATCAATGGCGT
CCCTGCCTGCGCGGACGCGGAGCTCCTCAACGCGCTGGCCCGGGGATCCT
GGGGCTTCGACGGCTACATCACCAGCGACTGCGGTGCCATCGCCGATATC
TGGACTCGGCACAATTACACGAACACGCCCGAGGAGGCCTGCCAGGTCGC
TTTGGAAGCCGGATGCGACCTGGACTGCTCGACCTTCTATCAGGAGCATT
GCCCCCACGCCCTCTCCCAGGGCCTGGTCACGGACGCGGACGTCGACACG
GCCCTCAGCCACCTCTTCCGCGTTCAGTTTCGGCTGGGCATGTTCGACGC
GGAGGAGGGACAGATCTACACCAAGTACGGGCTGGAGCGCTTGAATACGC
TGGAGCACCAGGAGTTGGCTCTGGAGGCGGCCAGGCAGGGCATCGTGCTC
TTGAAAAATCAGGGCCCGGTCTTGCCTCTGCCGTGCCCGGGGCTTGCGAA
CGAGCAGGGTGGGGAGCATCTGCCCGCTGCTCCCTTGGGGGCGGATGCGT
GGACAAGCACCTTTCTCCGCCATCATCGACGTGTCGAGGCCCCACCCGAG
GGGCCGTTGCCTGCGCGTGAACGCGTTTCCCTCGTGGCGGTGGTTGGGCC
CCACGCCAACGGCACCCAGGCCCTGCTGGGCAACTACCGAGGTATTCCAC
CCTACATTGTCAGCCCGATCGAGGGAATCCGTGCCTATGTCCCCGACGCT
CTCTTCGCGCCAGGCTGTGGCATCAACAGCTCCTCGGAACAGGCGTTCGC
GGATGCTGAATCCGCGGTTTCATCGGCCCATGTGACGGTGCTGATCCTGG
GCTTGGACGTGTCCATCGAGGACGAAGGGAAGGATCGGACCAGCCTTGAG
CTCCCCGCGCCCCAAGTCGAGTTGGCAGGTCGGGTCCTGGACGCCGCCAT
GGGCCGCCCGGTGGTGGTGGTGCTCGTGGGCGGAGGGGCAGTCGACGTGG
ACTTCTTGGCGCGGGACGACCGTGTCGCCGCCATGCTCTTTGCGGGCTAC
CCAGGCCAGGCAGGCGGGCAGGCGCTCGCAGAAATCCTGTTTGGAGACGT
GAACCCCAGCGGACGCCTCACACAAACCTTTTACCCAGCATCGTTTGTGA
CGCAGGCTGATGCAGGGGACATGCGGATGCGACCTGACCATAGCGACGGC
TTCCCTGGTCGCACGTATCGGTTTTACGATGGCCCGACTGTTTTTCCCTT
TGGGCACGGCCTGAGCTATACATCGTTCGAGATCGAAGCCATTGCGTGTC
CGGAAGGAGAGAGAGACAGACCACACTATGCAGGTTACGATGTGGTCGGA
AACCGAGGGACTGGTGGGAGAGAGGCTGCAATCTATTTGACGAACGCTAG
GCCCCACGATTCGAGGGTAATGAGCCGGATTTGCGTACGGGTTAAAAACA
CCGGCTCTCGGGTAGGGCGTGCCACCCTCATAGGATTTTTGAGGCCGCCC
TACGGCGTTGGTTTAGACGCACCGCGACGCTCGTTGCGTGCCTTCGGTAG
CATTTCGCTTGCTGCTCAGCAAGAAGCCGTTGCTATTGTGCAGGTGACAG
AGGTGGATATCAGCTTGGCAGATACTGCGGGGATGTTCCACCGTGTGCGA
GGCGAATGGACTTTTGAAATCGAGGGCTTCCAGCTACCGGTGCTAGTCGT
GTGA

protein sequence of rna4467

>rna4467-protein ID=rna4467-protein|Name=rna4467|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYY
AVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQY
TGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETR
KEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQ
DAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDD
ESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDG
GARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEE
AARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRAL
TFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC

mRNA from alignment at CM002463.1:656550..658039+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4467 ID=rna4467|Name=rna4467|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp|location=Sequence derived from alignment at CM002463.1:656550..658039+ (Nannochloropsis gaditana)
ATGGTTAATAGCCACGTAAACCGCAAAAGCCCGGAAAGgtatggaagagg
acaagagcGTCTAGCCAAAGAAGCAAAACTTGTACAGTACGAGTAGTCAC
GGGCTGAGAATTTCCAGAAATTTTCACCTGGTCTCCATGGACAGATTAAC
AGAAGTCCCCGCTTGGAATACTTCTGGGCCCATGCATGGTTCCGTTTGTT
CGCGACTCCGTTCTCACTCACTTCCCGACCCACAATCGCTACTATTTTCT
TCGTAGGAAACATTCTTACGACAATCAGCTGCATGCAAGCCCCATAAAGT
CAATGAAGACAAAGTATTATGCCGTGAAGGTGCCCATGCGCGCCATTTTT
ACCTCCTGGTCCGAATGCCACGCAGTGGTGAACGGGGCAGGAAACGCTAC
CTTCAAGTCTTTCTCGTCATTAGATGAGGCCAGGGCGTTTGTGGAAGATG
GCCTTGAATCACAACAATAcacaggaaagaagagcaGCAGGGAAAGCCAT
GGTTTGCAGATTTTTTCAGAGCAGGATCTCAAGGATTGTGGGATGCTTCA
AGAGGGGATTGATGAAGAGCGGGAGCAAAATATCGAAGGCTTATATGCAA
ATAGTGGGGCAGAAACACGAAAAGAATATATGGAAAGATCGTCCACTCCG
CACACTGACATGGATAATCATGTGTGCGGGACAGGAGGCGCTCGTTGTGC
AGCCAATGAGGAACGAAGGAaacggaagaggacgaaagaGGAACATGCAC
AGGACGTAAGCCAGGAACAAGACGCTTTTGCCCAGGAATGCGGTGACGCT
CCATTGACAGGTCGCCTGGGATCCAGAATAGGAGGCGGTTCTATTTGTAC
AGTTGGCATGAATGAGCTAGCCGGAGAGGGCCGTGGCGACCAGGAAAATG
AAGATGATGACTTCGACGATGAAAGCTCCCGAGTGACAGAGCCAATACCC
GCCATCATTCTTTCCCCCAATGATACATCTCCCAACATTCCTAGCGAAGA
CGTTTCCGCGACTGCTCTCCTCCAGAGGCGGCCGCGCTTCGTCGATGCGG
GAGTTTTGTTTTTCGATGGTGGGGCTCGGGGCAATCCGGGCGTCTCCGGC
GGCGGTGCAGTCATGTTCGACTGCGACAACAAGCAATTGTGGACTCTTTC
CGTGTTCCTGGGCTCCGATAAAACCAACAACCAAGCGGAATATTTGGCGC
TTTATcacggcttggaggaggcggcccgtAGGGGGGTCAGgaccctccac
gcccgaggGGACTCACTGCTGGTGATCCGGCAGATGGAAGGCGTGTGGAA
GGTGAAGAACAAAGCAATCATGCGCCTCCACGCGCAGGTCAAAGCCTTGG
CGCGCCGTTTTCGCGCGCTCACCTTCCAGCACGTCCCCCGGGCCGAAAAC
ACAGTGGCAGACGCCTTGGCCAACGCCGCCATGGACAAGAGGCACTCGAT
CcccgtcgtggaggaggcgggtctGGGCTTAGATTGCTAG

Coding sequence (CDS) from alignment at CM002463.1:656550..658039+

>rna4467 ID=rna4467|Name=rna4467|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002463.1:656550..658039+ (Nannochloropsis gaditana)
ATGGTTAATAGCCACGTAAACCGCAAAAGCCCGGAAAGgtatggaagagg
acaagagcGTCTAGCCAAAGAAGCAAAACTTGTACAGAAACATTCTTACG
ACAATCAGCTGCATGCAAGCCCCATAAAGTCAATGAAGACAAAGTATTAT
GCCGTGAAGGTGCCCATGCGCGCCATTTTTACCTCCTGGTCCGAATGCCA
CGCAGTGGTGAACGGGGCAGGAAACGCTACCTTCAAGTCTTTCTCGTCAT
TAGATGAGGCCAGGGCGTTTGTGGAAGATGGCCTTGAATCACAACAATAc
acaggaaagaagagcaGCAGGGAAAGCCATGGTTTGCAGATTTTTTCAGA
GCAGGATCTCAAGGATTGTGGGATGCTTCAAGAGGGGATTGATGAAGAGC
GGGAGCAAAATATCGAAGGCTTATATGCAAATAGTGGGGCAGAAACACGA
AAAGAATATATGGAAAGATCGTCCACTCCGCACACTGACATGGATAATCA
TGTGTGCGGGACAGGAGGCGCTCGTTGTGCAGCCAATGAGGAACGAAGGA
aacggaagaggacgaaagaGGAACATGCACAGGACGTAAGCCAGGAACAA
GACGCTTTTGCCCAGGAATGCGGTGACGCTCCATTGACAGGTCGCCTGGG
ATCCAGAATAGGAGGCGGTTCTATTTGTACAGTTGGCATGAATGAGCTAG
CCGGAGAGGGCCGTGGCGACCAGGAAAATGAAGATGATGACTTCGACGAT
GAAAGCTCCCGAGTGACAGAGCCAATACCCGCCATCATTCTTTCCCCCAA
TGATACATCTCCCAACATTCCTAGCGAAGACGTTTCCGCGACTGCTCTCC
TCCAGAGGCGGCCGCGCTTCGTCGATGCGGGAGTTTTGTTTTTCGATGGT
GGGGCTCGGGGCAATCCGGGCGTCTCCGGCGGCGGTGCAGTCATGTTCGA
CTGCGACAACAAGCAATTGTGGACTCTTTCCGTGTTCCTGGGCTCCGATA
AAACCAACAACCAAGCGGAATATTTGGCGCTTTATcacggcttggaggag
gcggcccgtAGGGGGGTCAGgaccctccacgcccgaggGGACTCACTGCT
GGTGATCCGGCAGATGGAAGGCGTGTGGAAGGTGAAGAACAAAGCAATCA
TGCGCCTCCACGCGCAGGTCAAAGCCTTGGCGCGCCGTTTTCGCGCGCTC
ACCTTCCAGCACGTCCCCCGGGCCGAAAACACAGTGGCAGACGCCTTGGC
CAACGCCGCCATGGACAAGAGGCACTCGATCcccgtcgtggaggaggcgg
gtctGGGCTTAGATTGCTAGATGGTTAATAGCCACGTAAACCGCAAAAGC
CCGGAAAGgtatggaagaggacaagagcGTCTAGCCAAAGAAGCAAAACT
TGTACAGAAACATTCTTACGACAATCAGCTGCATGCAAGCCCCATAAAGT
CAATGAAGACAAAGTATTATGCCGTGAAGGTGCCCATGCGCGCCATTTTT
ACCTCCTGGTCCGAATGCCACGCAGTGGTGAACGGGGCAGGAAACGCTAC
CTTCAAGTCTTTCTCGTCATTAGATGAGGCCAGGGCGTTTGTGGAAGATG
GCCTTGAATCACAACAATAcacaggaaagaagagcaGCAGGGAAAGCCAT
GGTTTGCAGATTTTTTCAGAGCAGGATCTCAAGGATTGTGGGATGCTTCA
AGAGGGGATTGATGAAGAGCGGGAGCAAAATATCGAAGGCTTATATGCAA
ATAGTGGGGCAGAAACACGAAAAGAATATATGGAAAGATCGTCCACTCCG
CACACTGACATGGATAATCATGTGTGCGGGACAGGAGGCGCTCGTTGTGC
AGCCAATGAGGAACGAAGGAaacggaagaggacgaaagaGGAACATGCAC
AGGACGTAAGCCAGGAACAAGACGCTTTTGCCCAGGAATGCGGTGACGCT
CCATTGACAGGTCGCCTGGGATCCAGAATAGGAGGCGGTTCTATTTGTAC
AGTTGGCATGAATGAGCTAGCCGGAGAGGGCCGTGGCGACCAGGAAAATG
AAGATGATGACTTCGACGATGAAAGCTCCCGAGTGACAGAGCCAATACCC
GCCATCATTCTTTCCCCCAATGATACATCTCCCAACATTCCTAGCGAAGA
CGTTTCCGCGACTGCTCTCCTCCAGAGGCGGCCGCGCTTCGTCGATGCGG
GAGTTTTGTTTTTCGATGGTGGGGCTCGGGGCAATCCGGGCGTCTCCGGC
GGCGGTGCAGTCATGTTCGACTGCGACAACAAGCAATTGTGGACTCTTTC
CGTGTTCCTGGGCTCCGATAAAACCAACAACCAAGCGGAATATTTGGCGC
TTTATcacggcttggaggaggcggcccgtAGGGGGGTCAGgaccctccac
gcccgaggGGACTCACTGCTGGTGATCCGGCAGATGGAAGGCGTGTGGAA
GGTGAAGAACAAAGCAATCATGCGCCTCCACGCGCAGGTCAAAGCCTTGG
CGCGCCGTTTTCGCGCGCTCACCTTCCAGCACGTCCCCCGGGCCGAAAAC
ACAGTGGCAGACGCCTTGGCCAACGCCGCCATGGACAAGAGGCACTCGAT
CcccgtcgtggaggaggcgggtctGGGCTTAGATTGCTAG

Synonyms

Publications