EWM26257.1, cds4456 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|585108256|gb|EWM26257.1| (ribonuclease h [Nannochloropsis gaditana]) HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0 Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query: 1 MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC 439
MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC
Sbjct: 1 MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC 439
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1154747938|ref|WP_078665131.1| (MULTISPECIES: ribonuclease H [Carboxydocella] >gi|1150558601|dbj|GAW28414.1| Fructose-2,6-bisphosphatase [Carboxydocella sp. ULO1] >gi|1152098929|emb|SJZ83068.1| ribonuclease HI [Carboxydocella sporoproducens DSM 16521]) HSP 1 Score: 124.405 bits (311), Expect = 1.252e-30 Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 0
Query: 295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSI 427
+LF DGG+RGNPG +G G V+ + + + L FLG TNN AEY AL GL A GV L + DS L+IRQ++G++KVKN+ + L A+VK LAR FR +T+QH+PR +N ADALAN AMD++ S
Sbjct: 4 ILFTDGGSRGNPGPAGCGWVLLNPEGEVLTEGCHFLGL-ATNNVAEYTALIKGLAAAQALGVTELVVKADSELMIRQLKGIYKVKNEGLKPLFARVKELARNFRQVTYQHIPREQNQRADALANQAMDRQASF 135
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1165571653|ref|WP_079906437.1| (ribonuclease H [Carboxydocella sp. JDF658] >gi|1150546780|dbj|GAW30833.1| Fructose-2,6-bisphosphatase [Carboxydocella sp. JDF658]) HSP 1 Score: 124.405 bits (311), Expect = 1.252e-30 Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 0
Query: 295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSI 427
+LF DGG+RGNPG +G G V+ + + + L FLG TNN AEY AL GL A GV L + DS L+IRQ++G++KVKN+ + L A+VK LAR FR +T+QH+PR +N ADALAN AMD++ S
Sbjct: 4 ILFTDGGSRGNPGPAGCGWVLLNPEGEVLTEGCHFLGL-ATNNIAEYTALIKGLAAAQALGVTELVVKADSELMIRQLKGIYKVKNEGLKPLFARVKELARNFRQVTYQHIPREQNQRADALANQAMDRQASF 135
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1121241087|ref|WP_073559055.1| (RNase H [Archangium sp. Cb G35] >gi|1113033269|gb|OJT27271.1| hypothetical protein BO221_04605 [Archangium sp. Cb G35]) HSP 1 Score: 116.701 bits (291), Expect = 8.341e-27 Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 0
Query: 252 SSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKR 424
++R EP A P+ T P +P E + A+ + LF DG ARGNPG +G GAV+ D + + + L FLG+ +TNN AEY+ L GL+ A GV+ L DS L+IRQ++G ++VK+ + L+ + L RF + HVPR +N AD ++N A+D+R
Sbjct: 46 ATRAPEPPAAEPRRPSRTIPPLPQESPAPGAI-------PSSLKLFSDGAARGNPGPAGAGAVLVDTEGRVVARLGRFLGT-QTNNYAEYMGLLLGLKHARSLGVKELEVLADSELLIRQLQGRYQVKSPTLRPLYEEASELLERFSRVKLTHVPREKNKAADEMSNRAIDER 210
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1125567121|gb|OLE75715.1| (hypothetical protein AUG02_06655 [Chloroflexi bacterium 13_1_20CM_2_70_9]) HSP 1 Score: 115.161 bits (287), Expect = 9.119e-27 Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 0
Query: 295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMD 422
VL+ DG ARGNPG +G GA++ D + L+ FLG TNN AEY L GLEEA RRG+R + R DSLLV+ QM G WK+K+ + L L +F +HVPR ENT ADAL+N A+D
Sbjct: 9 VLYADGAARGNPGPAGAGAILLDDRGNVVAELTKFLGH-ATNNVAEYNGLILGLEEALRRGIRDIDVRLDSLLVVEQMCGRWKIKHPRLQPLARHAGELLAKFPRHEIRHVPREENTRADALSNRAID 135
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1082210802|gb|OFW37899.1| (hypothetical protein A3J28_00680 [Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22]) HSP 1 Score: 115.161 bits (287), Expect = 1.717e-26 Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 0
Query: 295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDK 423
V + DGG+RGNPG +G G ++ D + L TLS FLG+ TNN AEY L LE AA+R + L DS L++RQM+G ++V++ + LH + + LARR + +HVPR +N AD LAN AMD+
Sbjct: 17 VAYIDGGSRGNPGPAGYGVLIQDAQGQTLETLSQFLGT-ATNNVAEYQGLLAALEYAAQRQSKRLKVYCDSELIVRQMQGSYRVQSPDLKPLHQRAQELARRLPQFSIEHVPREQNRQADRLANQAMDR 144
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|760088941|ref|WP_043771403.1| (hypothetical protein [Desulfobulbus propionicus]) HSP 1 Score: 113.235 bits (282), Expect = 1.857e-26 Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 0
Query: 296 LFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDK 423
LF DG +RGNPG +G GAV+ D N++L SV+LG TNN AEY AL GL+EA R G + DS L++RQ++G +KVKN+A++ L QV+ RF A + HVPR++N AD LAN +D+
Sbjct: 11 LFTDGASRGNPGQAGAGAVLLDNGNEELAAKSVYLGV-CTNNVAEYKALLIGLDEALRHGCTDVAVFLDSELIVRQIQGRYKVKNEALLPLFQQVQERLDRFAAWSITHVPRSQNARADQLANRGIDQ 137
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1083370148|gb|OGE87729.1| (hypothetical protein A3B77_02185 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_02_FULL_49_24] >gi|1083374069|gb|OGE89345.1| hypothetical protein A2760_03165 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_50_67] >gi|1083374755|gb|OGE89964.1| hypothetical protein A3E29_02525 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_12_FULL_48_16] >gi|1083384210|gb|OGE97491.1| hypothetical protein A2990_02110 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_01_FULL_49_40] >gi|1083390904|gb|OGF03105.1| hypothetical protein A3J07_03380 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_02_FULL_49_13] >gi|1083391803|gb|OGF03867.1| hypothetical protein A3H14_02525 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_12_FULL_49_8]) HSP 1 Score: 112.464 bits (280), Expect = 3.124e-26 Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 0
Query: 292 DAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHS 426
D +++ DGGARGNPG G G V+FD K+L +LG TNNQAEY AL L EA + G + R DS LV+RQ+ G +K+K + L A+V AL ++F + F HVPRA+N +AD L N A+D++ +
Sbjct: 3 DKLIIYSDGGARGNPGPGGIGFVIFDAGGKELKRFKHYLGV-ATNNQAEYRALIAALIEANKLGFERVVCRLDSELVVRQLTGQYKIKEPGLKSLAAEVLALTQKFLQVEFNHVPRAQNKIADQLVNEALDEQQA 136
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|502785051|ref|WP_013020027.1| (ribonuclease H [Stackebrandtia nassauensis] >gi|290571491|gb|ADD44456.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]) HSP 1 Score: 112.079 bits (279), Expect = 4.602e-26 Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0
Query: 291 VDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMD 422
+D ++ DGG+RGNPG +G GAV+ D ++L FLG TNN AEY L GL A G + R DS LV+ QM G WKV++ + L A+ AL R+F ++TF +PRA+NT ADALANAAMD
Sbjct: 4 IDKVIVEADGGSRGNPGPAGYGAVVLDETGQELMDRQGFLGI-ATNNVAEYSGLIAGLTAARELGAANVAVRMDSKLVVEQMNGNWKVRHPGLRPLAAEAAALVRQFDSVTFTWIPRADNTRADALANAAMD 134
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1083359315|gb|OGE78313.1| (hypothetical protein A2751_04145 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_14]) HSP 1 Score: 112.079 bits (279), Expect = 4.973e-26 Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 0
Query: 299 DGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDK 423
DGGARGNPG +G G V+ D K L +LG +KTNNQAEY A+ L+ A + G L R DS L +RQ+ ++KVKN + +L ++K L F +TF H+PRA+N+ AD + N A+DK
Sbjct: 8 DGGARGNPGPAGIGVVIQTVDKKVLEKFGKYLGDNKTNNQAEYTAVIEALKAAKKLGGTHLEFRMDSELAVRQLNHIYKVKNAELQQLFLEIKNLQTEFSHVTFTHIPRAQNSAADKMVNEAIDK 132 The following BLAST results are available for this feature:
BLAST of EWM26257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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