EWM26257.1, cds4456 (CDS) Nannochloropsis gaditana

Overview
NameEWM26257.1
Unique Namecds4456
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:656550..656635 +
Alignment locationCM002463.1:656806..658039 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26257.1
Productribonuclease h
Orig transcript idgnl|cribi|Naga_100025g22.7548.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:656550..656635 +
CM002463.1supercontigCM002463.1:656806..658039 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR009027Ribosomal_L9/RNase_H1_N
IPR002156RNaseH_domain
IPR012337RNaseH-like_dom
IPR011320RNase_H1_N
Homology
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|585108256|gb|EWM26257.1| (ribonuclease h [Nannochloropsis gaditana])

HSP 1 Score: 915.99 bits (2366), Expect = 0.000e+0
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query:    1 MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC 439
            MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC
Sbjct:    1 MVNSHVNRKSPERYGRGQERLAKEAKLVQKHSYDNQLHASPIKSMKTKYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSEQDLKDCGMLQEGIDEEREQNIEGLYANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRTKEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENEDDDFDDESSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSIPVVEEAGLGLDC 439          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1154747938|ref|WP_078665131.1| (MULTISPECIES: ribonuclease H [Carboxydocella] >gi|1150558601|dbj|GAW28414.1| Fructose-2,6-bisphosphatase [Carboxydocella sp. ULO1] >gi|1152098929|emb|SJZ83068.1| ribonuclease HI [Carboxydocella sporoproducens DSM 16521])

HSP 1 Score: 124.405 bits (311), Expect = 1.252e-30
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 0
Query:  295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSI 427
            +LF DGG+RGNPG +G G V+ + + + L     FLG   TNN AEY AL  GL  A   GV  L  + DS L+IRQ++G++KVKN+ +  L A+VK LAR FR +T+QH+PR +N  ADALAN AMD++ S 
Sbjct:    4 ILFTDGGSRGNPGPAGCGWVLLNPEGEVLTEGCHFLGL-ATNNVAEYTALIKGLAAAQALGVTELVVKADSELMIRQLKGIYKVKNEGLKPLFARVKELARNFRQVTYQHIPREQNQRADALANQAMDRQASF 135          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1165571653|ref|WP_079906437.1| (ribonuclease H [Carboxydocella sp. JDF658] >gi|1150546780|dbj|GAW30833.1| Fructose-2,6-bisphosphatase [Carboxydocella sp. JDF658])

HSP 1 Score: 124.405 bits (311), Expect = 1.252e-30
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 0
Query:  295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHSI 427
            +LF DGG+RGNPG +G G V+ + + + L     FLG   TNN AEY AL  GL  A   GV  L  + DS L+IRQ++G++KVKN+ +  L A+VK LAR FR +T+QH+PR +N  ADALAN AMD++ S 
Sbjct:    4 ILFTDGGSRGNPGPAGCGWVLLNPEGEVLTEGCHFLGL-ATNNIAEYTALIKGLAAAQALGVTELVVKADSELMIRQLKGIYKVKNEGLKPLFARVKELARNFRQVTYQHIPREQNQRADALANQAMDRQASF 135          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1121241087|ref|WP_073559055.1| (RNase H [Archangium sp. Cb G35] >gi|1113033269|gb|OJT27271.1| hypothetical protein BO221_04605 [Archangium sp. Cb G35])

HSP 1 Score: 116.701 bits (291), Expect = 8.341e-27
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 0
Query:  252 SSRVTEPIPAIILSPNDTSPNIPSEDVSATALLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKR 424
            ++R  EP  A    P+ T P +P E  +  A+         +  LF DG ARGNPG +G GAV+ D + + +  L  FLG+ +TNN AEY+ L  GL+ A   GV+ L    DS L+IRQ++G ++VK+  +  L+ +   L  RF  +   HVPR +N  AD ++N A+D+R
Sbjct:   46 ATRAPEPPAAEPRRPSRTIPPLPQESPAPGAI-------PSSLKLFSDGAARGNPGPAGAGAVLVDTEGRVVARLGRFLGT-QTNNYAEYMGLLLGLKHARSLGVKELEVLADSELLIRQLQGRYQVKSPTLRPLYEEASELLERFSRVKLTHVPREKNKAADEMSNRAIDER 210          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1125567121|gb|OLE75715.1| (hypothetical protein AUG02_06655 [Chloroflexi bacterium 13_1_20CM_2_70_9])

HSP 1 Score: 115.161 bits (287), Expect = 9.119e-27
Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 0
Query:  295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMD 422
            VL+ DG ARGNPG +G GA++ D     +  L+ FLG   TNN AEY  L  GLEEA RRG+R +  R DSLLV+ QM G WK+K+  +  L      L  +F     +HVPR ENT ADAL+N A+D
Sbjct:    9 VLYADGAARGNPGPAGAGAILLDDRGNVVAELTKFLGH-ATNNVAEYNGLILGLEEALRRGIRDIDVRLDSLLVVEQMCGRWKIKHPRLQPLARHAGELLAKFPRHEIRHVPREENTRADALSNRAID 135          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1082210802|gb|OFW37899.1| (hypothetical protein A3J28_00680 [Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22])

HSP 1 Score: 115.161 bits (287), Expect = 1.717e-26
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 0
Query:  295 VLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDK 423
            V + DGG+RGNPG +G G ++ D   + L TLS FLG+  TNN AEY  L   LE AA+R  + L    DS L++RQM+G ++V++  +  LH + + LARR    + +HVPR +N  AD LAN AMD+
Sbjct:   17 VAYIDGGSRGNPGPAGYGVLIQDAQGQTLETLSQFLGT-ATNNVAEYQGLLAALEYAAQRQSKRLKVYCDSELIVRQMQGSYRVQSPDLKPLHQRAQELARRLPQFSIEHVPREQNRQADRLANQAMDR 144          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|760088941|ref|WP_043771403.1| (hypothetical protein [Desulfobulbus propionicus])

HSP 1 Score: 113.235 bits (282), Expect = 1.857e-26
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 0
Query:  296 LFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDK 423
            LF DG +RGNPG +G GAV+ D  N++L   SV+LG   TNN AEY AL  GL+EA R G   +    DS L++RQ++G +KVKN+A++ L  QV+    RF A +  HVPR++N  AD LAN  +D+
Sbjct:   11 LFTDGASRGNPGQAGAGAVLLDNGNEELAAKSVYLGV-CTNNVAEYKALLIGLDEALRHGCTDVAVFLDSELIVRQIQGRYKVKNEALLPLFQQVQERLDRFAAWSITHVPRSQNARADQLANRGIDQ 137          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1083370148|gb|OGE87729.1| (hypothetical protein A3B77_02185 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_02_FULL_49_24] >gi|1083374069|gb|OGE89345.1| hypothetical protein A2760_03165 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_50_67] >gi|1083374755|gb|OGE89964.1| hypothetical protein A3E29_02525 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_12_FULL_48_16] >gi|1083384210|gb|OGE97491.1| hypothetical protein A2990_02110 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_01_FULL_49_40] >gi|1083390904|gb|OGF03105.1| hypothetical protein A3J07_03380 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_02_FULL_49_13] >gi|1083391803|gb|OGF03867.1| hypothetical protein A3H14_02525 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_12_FULL_49_8])

HSP 1 Score: 112.464 bits (280), Expect = 3.124e-26
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 0
Query:  292 DAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDKRHS 426
            D  +++ DGGARGNPG  G G V+FD   K+L     +LG   TNNQAEY AL   L EA + G   +  R DS LV+RQ+ G +K+K   +  L A+V AL ++F  + F HVPRA+N +AD L N A+D++ +
Sbjct:    3 DKLIIYSDGGARGNPGPGGIGFVIFDAGGKELKRFKHYLGV-ATNNQAEYRALIAALIEANKLGFERVVCRLDSELVVRQLTGQYKIKEPGLKSLAAEVLALTQKFLQVEFNHVPRAQNKIADQLVNEALDEQQA 136          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|502785051|ref|WP_013020027.1| (ribonuclease H [Stackebrandtia nassauensis] >gi|290571491|gb|ADD44456.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728])

HSP 1 Score: 112.079 bits (279), Expect = 4.602e-26
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0
Query:  291 VDAGVLFFDGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMD 422
            +D  ++  DGG+RGNPG +G GAV+ D   ++L     FLG   TNN AEY  L  GL  A   G   +  R DS LV+ QM G WKV++  +  L A+  AL R+F ++TF  +PRA+NT ADALANAAMD
Sbjct:    4 IDKVIVEADGGSRGNPGPAGYGAVVLDETGQELMDRQGFLGI-ATNNVAEYSGLIAGLTAARELGAANVAVRMDSKLVVEQMNGNWKVRHPGLRPLAAEAAALVRQFDSVTFTWIPRADNTRADALANAAMD 134          
BLAST of EWM26257.1 vs. NCBI_GenBank
Match: gi|1083359315|gb|OGE78313.1| (hypothetical protein A2751_04145 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_14])

HSP 1 Score: 112.079 bits (279), Expect = 4.973e-26
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 0
Query:  299 DGGARGNPGVSGGGAVMFDCDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMDK 423
            DGGARGNPG +G G V+   D K L     +LG +KTNNQAEY A+   L+ A + G   L  R DS L +RQ+  ++KVKN  + +L  ++K L   F  +TF H+PRA+N+ AD + N A+DK
Sbjct:    8 DGGARGNPGPAGIGVVIQTVDKKVLEKFGKYLGDNKTNNQAEYTAVIEALKAAKKLGGTHLEFRMDSELAVRQLNHIYKVKNAELQQLFLEIKNLQTEFSHVTFTHIPRAQNSAADKMVNEAIDK 132          
The following BLAST results are available for this feature:
BLAST of EWM26257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108256|gb|EWM26257.1|0.000e+0100.00ribonuclease h [Nannochloropsis gaditana][more]
gi|1154747938|ref|WP_078665131.1|1.252e-3050.38MULTISPECIES: ribonuclease H [Carboxydocella] >gi|... [more]
gi|1165571653|ref|WP_079906437.1|1.252e-3050.38ribonuclease H [Carboxydocella sp. JDF658] >gi|115... [more]
gi|1121241087|ref|WP_073559055.1|8.341e-2738.15RNase H [Archangium sp. Cb G35] >gi|1113033269|gb|... [more]
gi|1125567121|gb|OLE75715.1|9.119e-2749.22hypothetical protein AUG02_06655 [Chloroflexi bact... [more]
gi|1082210802|gb|OFW37899.1|1.717e-2645.74hypothetical protein A3J28_00680 [Acidobacteria ba... [more]
gi|760088941|ref|WP_043771403.1|1.857e-2648.44hypothetical protein [Desulfobulbus propionicus][more]
gi|1083370148|gb|OGE87729.1|3.124e-2645.19hypothetical protein A3B77_02185 [Candidatus Doudn... [more]
gi|502785051|ref|WP_013020027.1|4.602e-2647.73ribonuclease H [Stackebrandtia nassauensis] >gi|29... [more]
gi|1083359315|gb|OGE78313.1|4.973e-2645.60hypothetical protein A2751_04145 [Candidatus Doudn... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4467rna4467Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications