rna4460, rna4460 (mRNA) Nannochloropsis gaditana

Overview
Namerna4460
Unique Namerna4460
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1843
Alignment locationCM002463.1:642300..643725 -

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Properties
Property NameValue
Productproteasome alpha5 isoform a
Orig transcript idgnl|cribi|Naga_100025g30.7536.mrna
Orig protein idgnl|cribi|Naga_100025g30.7536
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:642300..643725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g30gene4302Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4460rna4460-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26245.1cds4449Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4460 ID=rna4460|Name=rna4460|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp
GATTATTTTGTGGCAGTCGCGGTAGGAGTGTATTCCACTGTCGGTGATGG
GAACCATGTCAAGAAAAGGCATCGCAGCCAGCCAGCCCACTAGCCTGTTG
CAGTTGCCGCAGCAACTGCCATATAAAGTTGAAATCGTTGTTTCCCGCTA
TCTTCCTCGTGAAACTTGCATTTTGTTTGTATAATAAAATAAAAGAGGAG
CGATTCTTTTCGGCTGAGTGCATTATCTCCACCATGCATGTCTACGCATG
ATCATCCATCTCACCCACCGAGTCGACTATCTAATTGCCCCCCCCCCTTC
TCAGCTGCAGCCTTGTTTTTTTCCTTCAAGATGGTTGGCTGGAGCAATTG
TCTTACATTGACTTTAGGTCTGGCCTCGAGTGTACATGCCTTCGTACCAG
CTGCGCATTTAAAGGCCATTTGCGGAAATCCTGTGCTGCACAAGGACTAT
GCAACGACCACCCACCCGCACGTTTGCACGTGCCCCGCTCGTGCGCACTC
TCCGGGCAATGTTGATGGGCTACAATCAACTCCAGGAGCGCGTAGAAGAG
TGGAGGCATTGGTGCTCATGGCCCGGGGCAGACGGGGACGTGGAGGTGGG
GGATGGCAGCGGCGCAGGAGGCAAGATGCTAATCCGATTGAATTTGACAA
GTATGGATTCCCTATCCCGCCCCAGAAGCCCGCAAAGGAACTGGAGGAGG
AGCATCGTGAGTGGATGGAGTCAATAGAGCCTCCAGAAGGCTTTCCAGAA
TTTGACGCGGCCAAAGAGGGATTCTCACCGGAGGAAATGGAAAATGATCC
TTTGTTGGACCCGGCCGTTGCTGTTACGACGGCAGAGACCGGAGCGGCGA
CCGTGATCGACGTGACAGCAAGCGAAGAGGGGGCGGGGCAGGAGAACGAG
CCAGACTGGGACAACATTCCTGAGTACGGTGGTGAGTTTCTGGGCATGGA
CGACCCCCTCGATGCCCCGTGGCGGTTGCATGCCGAGGATGTGATTCGGG
GGGCCGTGACCGAGGCCGGCTACCACACCTACGACGTGACATGGCACCTA
CACCATGTGAACGTGGACATTACCAGGCAGGACGTCGGCAACGTAGAAAA
TGAGGGGGAGGGAGTGGCGGACGCAGGGTCTTTATCCTCGGACGAGATAG
TGGAGGTGACGCGTGCCGTTGAAGAGGCACTCTTGCCGCACGACAACCAC
CTGCGAATCCTGCAGCGCTTTCACTTGTGCGTGGGCACGCCGGGAGCCAA
GGACGTGCTGACCACCGAGAGAGAGTTTCAGGCATTTCGGGGCTACGAGG
TCCAGGTGTCTGTCACGAACCCGATCAATGAGAGCCCCACACCCAACGTG
CGCGTGGGCCGCTTGCTGGAGCGCAACCCCATGCACACGATTTTGAACGT
CAAGGGGAAGAACGTGACGATACCAACCGGGATGGTCGTAGAGGTGCGCC
TGCCATCGGCCATGCACGAGGCGGACGACTTCGAGGTGATGGAGGAGGGG
TGGGCGAACCTGTTTGTGGACGGAAAGGTGCCGAGCACCGTGAGCGTCGA
GTATGAGATGCCGGGGCTGACGACTCTGGGCAAGGGGGTGAAGATGGTGG
AGCCCGAGTACTACGTGCCGCCCTCCCTCCCGGACGAGGACGGGGAGGAA
GGGGAGGGAGAGGAGTACGTGGGTGGTGAGGAGGACGAGGCCTGAGGTAA
AGGGGGTTTCCCTGTTTGGTTTATAGGGAGGGAAGACCTACTGAGGAAGG
TTAATCGACTTAGCAGGATAGAAGGGAAGCATGCAATACCGGCCATGCGC
CGCCCGCACAAAGTAAACAGTGTGTCCGATCAGCCATGTGGAA
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protein sequence of rna4460

>rna4460-protein ID=rna4460-protein|Name=rna4460|organism=Nannochloropsis gaditana|type=polypeptide|length=430bp
MTDGDILACLRRKRSIAPDVPVDPPNAQPPPSPSLSLPSPHFLRRLRHTN
PPCLLLAIVVLLLNFVCAVHAALESGNNGGRRLVEVYHPFPYTPEGLIRQ
LTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPTPKIGQMDQHI
AYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAH
YRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVG
FLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVY
EMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDS
VMEDSSSSRVQTRPQHRHEQAGRSQVTDPSRETCAVFPFPDQLEMASADT
GQPPGTGNFHRPTQQFNETSKPSIHVKSNN
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mRNA from alignment at CM002463.1:642300..643725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4460 ID=rna4460|Name=rna4460|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp|location=Sequence derived from alignment at CM002463.1:642300..643725- (Nannochloropsis gaditana)
ATGACGGACGGCGACATCCTGGCTTGCTTGAGAAGAAAACGAAGCATTGC
GCCGGACGTGCCGGTAGACCCTCCAAACGCACAACCTCCCCCCTCTCCCT
CCTTGTCACTTCCATCGCCCCACTTCCTTCGCCGGCTGCGGCATACCAAC
CCACCATGTCTCCTCTTGGCTATTGTTGTCCTCCTGTTGAATTTCGTTTG
CGCAGTTCATGCTGCTCTTGAAAGTGGAAACAACGGAGGGCGCCGCCTCG
TCGAAGTCTATCATCCTTTCCCGTATACACCTGAAGGCCTCATTCGACAG
CTCACGCACGCCCAGCAAGCCGTTAATAAAGGAAGTTTAGCCATGGCTCT
CGTAGCCAAAGACGGGGTTGTCCTTGTTGGGTCACGTCGTAACCTATCTC
CTCTACTGGTCGGCCCTACACCCAAAATCGGTCAGATGGACCAGCATATT
GCGTACGTGATGGCAGGCCTGGTGCCAGACGGGCGATACGTTGTTCGACG
AGGCCGTCTACTCTCACAACAGCATTGGTTTGTGTACGGCGAAGAAGTAG
GACTTCCAGGTTTGCTAATGGACCTGAGCAAGGTCTTGACGTCTGCTCAC
TACCGTCTACCACCCGAGGGTCCGCTTGGAGAAAAGAAAGGCGCTTCTTT
CTTCGAGGAAATCAGGCCGAAGCCGTCGGTAGACCCGATTGGGGATGCAG
AGGCGGAGCTGAAAAAAGAAGGCCTACCAGCTCGCTATTTTGGGGTGGGT
TTCTTGTTCGCAGGGCCGCTGACTGCCAGCAGGGCTCCGACACCTGTAGA
TGAGATGAACGGGGGCGACAATCCTGCGTCGTCGGCCGACGTAGACACAA
CCAGGCCTACGGAGGAAGCGTCTTCGACCTACCCCCCTTGGGCGGTGTAC
GAGATGGGGCCCTCCGGACTCTTCGTCCGCTGGTCCGCCCGGGCAATCGG
AGAGCGTGGTGATCGCGCCGAGGCCCTCCTGGAGTCCCGGTACCGCCCAG
GATTGACCTTAGAGGAGTGTCAACGCCTGGCGATCCATATATGTGACTCC
GTCATGGAAGATTCCTCCAGCTCGCGCGTCCAGACTCGGCCGCAGCACAG
GCACGAGCAGGCGGGGAGATCCCAAGTCACGGACCCCTCGAGAGAGACCT
GCGCCGTCTTCCCCTTCCCTGACCAGCTGGAGATGGCCTCGTTGACGCGC
GACAAAGGGGGCCGGGCTCATTTGCGTCGTCTGTCGGACGCCGAAGTCCG
GCAGCTCCGCGAAGACCTGTGCGGAAAGATGGGGCTGGTCGAAACTGCCC
CCCCCTCCCCTACCTCTCCCTAGGGCTGACACTGGACAGCCGCCAGGGAC
AGGGAATTTTCATCGGCCTACGCAGCAATTTAATGAAACATCAAAGCCCT
CAATACATGTGAAAAGCAACAACTGA
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Coding sequence (CDS) from alignment at CM002463.1:642300..643725-

>rna4460 ID=rna4460|Name=rna4460|organism=Nannochloropsis gaditana|type=CDS|length=2586bp|location=Sequence derived from alignment at CM002463.1:642300..643725- (Nannochloropsis gaditana)
GGCTGACACTGGACAGCCGCCAGGGACAGGGAATTTTCATCGGCCTACGC
AGCAATTTAATGAAACATCAAAGCCCTCAATACATGTGAAAAGCAACAAC
TGAATGACGGACGGCGACATCCTGGCTTGCTTGAGAAGAAAACGAAGCAT
TGCGCCGGACGTGCCGGTAGACCCTCCAAACGCACAACCTCCCCCCTCTC
CCTCCTTGTCACTTCCATCGCCCCACTTCCTTCGCCGGCTGCGGCATACC
AACCCACCATGTCTCCTCTTGGCTATTGTTGTCCTCCTGTTGAATTTCGT
TTGCGCAGTTCATGCTGCTCTTGAAAGTGGAAACAACGGAGGGCGCCGCC
TCGTCGAAGTCTATCATCCTTTCCCGTATACACCTGAAGGCCTCATTCGA
CAGCTCACGCACGCCCAGCAAGCCGTTAATAAAGGAAGTTTAGCCATGGC
TCTCGTAGCCAAAGACGGGGTTGTCCTTGTTGGGTCACGTCGTAACCTAT
CTCCTCTACTGGTCGGCCCTACACCCAAAATCGGTCAGATGGACCAGCAT
ATTGCGTACGTGATGGCAGGCCTGGTGCCAGACGGGCGATACGTTGTTCG
ACGAGGCCGTCTACTCTCACAACAGCATTGGTTTGTGTACGGCGAAGAAG
TAGGACTTCCAGGTTTGCTAATGGACCTGAGCAAGGTCTTGACGTCTGCT
CACTACCGTCTACCACCCGAGGGTCCGCTTGGAGAAAAGAAAGGCGCTTC
TTTCTTCGAGGAAATCAGGCCGAAGCCGTCGGTAGACCCGATTGGGGATG
CAGAGGCGGAGCTGAAAAAAGAAGGCCTACCAGCTCGCTATTTTGGGGTG
GGTTTCTTGTTCGCAGGGCCGCTGACTGCCAGCAGGGCTCCGACACCTGT
AGATGAGATGAACGGGGGCGACAATCCTGCGTCGTCGGCCGACGTAGACA
CAACCAGGCCTACGGAGGAAGCGTCTTCGACCTACCCCCCTTGGGCGGTG
TACGAGATGGGGCCCTCCGGACTCTTCGTCCGCTGGTCCGCCCGGGCAAT
CGGAGAGCGTGGTGATCGCGCCGAGGCCCTCCTGGAGTCCCGGTACCGCC
CAGGATTGACCTTAGAGGAGTGTCAACGCCTGGCGATCCATATATGTGAC
TCCGTCATGGAAGATTCCTCCAGCTCGCGCGTCCAGACTCGGCCGCAGCA
CAGGCACGAGCAGGCGGGGAGATCCCAAGTCACGGACCCCTCGAGAGAGA
CCTGCGCCGTCTTCCCCTTCCCTGACCAGCTGGAGATGGCCTCGGCTGAC
ACTGGACAGCCGCCAGGGACAGGGAATTTTCATCGGCCTACGCAGCAATT
TAATGAAACATCAAAGCCCTCAATACATGTGAAAAGCAACAACTGAATGA
CGGACGGCGACATCCTGGCTTGCTTGAGAAGAAAACGAAGCATTGCGCCG
GACGTGCCGGTAGACCCTCCAAACGCACAACCTCCCCCCTCTCCCTCCTT
GTCACTTCCATCGCCCCACTTCCTTCGCCGGCTGCGGCATACCAACCCAC
CATGTCTCCTCTTGGCTATTGTTGTCCTCCTGTTGAATTTCGTTTGCGCA
GTTCATGCTGCTCTTGAAAGTGGAAACAACGGAGGGCGCCGCCTCGTCGA
AGTCTATCATCCTTTCCCGTATACACCTGAAGGCCTCATTCGACAGCTCA
CGCACGCCCAGCAAGCCGTTAATAAAGGAAGTTTAGCCATGGCTCTCGTA
GCCAAAGACGGGGTTGTCCTTGTTGGGTCACGTCGTAACCTATCTCCTCT
ACTGGTCGGCCCTACACCCAAAATCGGTCAGATGGACCAGCATATTGCGT
ACGTGATGGCAGGCCTGGTGCCAGACGGGCGATACGTTGTTCGACGAGGC
CGTCTACTCTCACAACAGCATTGGTTTGTGTACGGCGAAGAAGTAGGACT
TCCAGGTTTGCTAATGGACCTGAGCAAGGTCTTGACGTCTGCTCACTACC
GTCTACCACCCGAGGGTCCGCTTGGAGAAAAGAAAGGCGCTTCTTTCTTC
GAGGAAATCAGGCCGAAGCCGTCGGTAGACCCGATTGGGGATGCAGAGGC
GGAGCTGAAAAAAGAAGGCCTACCAGCTCGCTATTTTGGGGTGGGTTTCT
TGTTCGCAGGGCCGCTGACTGCCAGCAGGGCTCCGACACCTGTAGATGAG
ATGAACGGGGGCGACAATCCTGCGTCGTCGGCCGACGTAGACACAACCAG
GCCTACGGAGGAAGCGTCTTCGACCTACCCCCCTTGGGCGGTGTACGAGA
TGGGGCCCTCCGGACTCTTCGTCCGCTGGTCCGCCCGGGCAATCGGAGAG
CGTGGTGATCGCGCCGAGGCCCTCCTGGAGTCCCGGTACCGCCCAGGATT
GACCTTAGAGGAGTGTCAACGCCTGGCGATCCATATATGTGACTCCGTCA
TGGAAGATTCCTCCAGCTCGCGCGTCCAGACTCGGCCGCAGCACAGGCAC
GAGCAGGCGGGGAGATCCCAAGTCACGGACCCCTCGAGAGAGACCTGCGC
CGTCTTCCCCTTCCCTGACCAGCTGGAGATGGCCTC
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Synonyms
Publications