EWM26245.1, cds4449 (CDS) Nannochloropsis gaditana

Overview
NameEWM26245.1
Unique Namecds4449
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:642536..643725 -
Alignment locationCM002463.1:642300..642402 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26245.1
Productproteasome alpha5 isoform a
Orig transcript idgnl|cribi|Naga_100025g30.7536.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:642536..643725 -
CM002463.1supercontigCM002463.1:642300..642402 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|585108244|gb|EWM26245.1| (proteasome alpha5 isoform a [Nannochloropsis gaditana])

HSP 1 Score: 880.937 bits (2275), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:    1 MTDGDILACLRRKRSIAPDVPVDPPNAQPPPSPSLSLPSPHFLRRLRHTNPPCLLLAIVVLLLNFVCAVHAALESGNNGGRRLVEVYHPFPYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSSRVQTRPQHRHEQAGRSQVTDPSRETCAVFPFPDQLEMASADTGQPPGTGNFHRPTQQFNETSKPSIHVKSNN 430
            MTDGDILACLRRKRSIAPDVPVDPPNAQPPPSPSLSLPSPHFLRRLRHTNPPCLLLAIVVLLLNFVCAVHAALESGNNGGRRLVEVYHPFPYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSSRVQTRPQHRHEQAGRSQVTDPSRETCAVFPFPDQLEMASADTGQPPGTGNFHRPTQQFNETSKPSIHVKSNN
Sbjct:    1 MTDGDILACLRRKRSIAPDVPVDPPNAQPPPSPSLSLPSPHFLRRLRHTNPPCLLLAIVVLLLNFVCAVHAALESGNNGGRRLVEVYHPFPYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSSRVQTRPQHRHEQAGRSQVTDPSRETCAVFPFPDQLEMASADTGQPPGTGNFHRPTQQFNETSKPSIHVKSNN 430          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|669330454|gb|KFD70629.1| (hypothetical protein M514_12670 [Trichuris suis])

HSP 1 Score: 108.612 bits (270), Expect = 1.106e-23
Identity = 80/269 (29.74%), Postives = 120/269 (44.61%), Query Frame = 0
Query:   91 PYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVG-PTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSS 358
             ++PEG + Q+ +A +A+  GS A+ +  K+GV+LV  +R  SPL+      KI ++D HI    +GL+ D R +V R R+ +  +WFVYGE++ + G        +T A   L  E                        GD +A    E   +R FGV  LFAG                         VD T P            ++ + PSG F+  SA+AIG   + A+ +L+ +Y   +TL E Q L I I   VME+  +S
Sbjct:   14 TFSPEGRLFQVEYAIEAIKLGSTAIGIQTKEGVLLVCEKRITSPLMEAHSVEKIMKIDSHIGCTTSGLIGDTRTLVDRARVEALNYWFVYGEQISVEG--------VTQAVSNLALE-----------------------FGDDDA----EAAMSRPFGVAMLFAG-------------------------VDKTGPR-----------LFNLDPSGTFIECSAKAIGAACESAQQVLQEKYHSEITLREAQLLTITILKQVMEEKVTS 211          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|669222782|emb|CDW55919.1| (proteasome subunit alpha type 5 [Trichuris trichiura])

HSP 1 Score: 108.612 bits (270), Expect = 1.106e-23
Identity = 80/269 (29.74%), Postives = 120/269 (44.61%), Query Frame = 0
Query:   91 PYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVG-PTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSS 358
             ++PEG + Q+ +A +A+  GS A+ +  K+GV+LV  +R  SPL+      KI ++D HI    +GL+ D R +V R R+ +  +WFVYGE++ + G        +T A   L  E                        GD +A    E   +R FGV  LFAG                         VD T P            ++ + PSG F+  SA+AIG   + A+ +L+ +Y   +TL E Q L I I   VME+  +S
Sbjct:   14 TFSPEGRLFQVEYAIEAIKLGSTAIGIQTKEGVLLVCEKRITSPLMEAHSVEKIMKIDSHIGCTTSGLIGDTRTLVDRARVEALNYWFVYGEQISVEG--------VTQAVSNLALE-----------------------FGDDDA----EAAMSRPFGVAMLFAG-------------------------VDKTGPR-----------LFNLDPSGTFIECSAKAIGAACESAQQVLQEKYHSEITLREAQLLTITILKQVMEEKVTS 211          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|768432866|ref|XP_011557776.1| (PREDICTED: proteasome subunit alpha type-5-like [Plutella xylostella] >gi|768434385|ref|XP_011558600.1| PREDICTED: proteasome subunit alpha type-5-like [Plutella xylostella])

HSP 1 Score: 104.375 bits (259), Expect = 7.537e-22
Identity = 78/267 (29.21%), Postives = 118/267 (44.19%), Query Frame = 0
Query:   92 YTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPT-PKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSS 357
            ++PEG + Q+ +A +A+  GS A+ +   +GVVL   +R  SPL+   T  KI ++D+HIA  ++GL+ D R +V R R+ SQQHWFVY E + +      +S +                         I+   S D  G A          +R FGV  +FAG                         +D   P            +Y M PSG FV++ A+AIG   + A+  L+  Y   +TL+E  + A+ I   VME+  S
Sbjct:   15 FSPEGRLFQVEYAIEAIKLGSTAIGICTSEGVVLAVEKRITSPLMEPTTIEKIVEVDRHIACAVSGLMADSRTLVERARMESQQHWFVYNERMSVESCAQAVSNLA------------------------IQFGDSDDDSGTA---------MSRPFGVAIMFAG-------------------------IDEKGP-----------QLYHMDPSGTFVQYDAKAIGSGSEGAQQSLKEAYHKSMTLKEAIKSALTILKQVMEEKLS 212          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|195027251|ref|XP_001986497.1| (GH21393 [Drosophila grimshawi] >gi|193902497|gb|EDW01364.1| GH21393 [Drosophila grimshawi])

HSP 1 Score: 103.605 bits (257), Expect = 8.565e-22
Identity = 72/264 (27.27%), Postives = 116/264 (43.94%), Query Frame = 0
Query:   92 YTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPT-PKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMED 354
            ++PEG + Q+ +A +A+  GS A+ +   D VVL   +R  SPL+V  T  KI ++D+HI    +GL+ D R ++ R R+  Q HWFVY EE+ +      +S +           G  G+  GA+                           +R FGV  LFAG                         ++  +P            ++ M PSG ++R+SA+AIG   + A+  L+ +Y P +TL +   L ++    VME+
Sbjct:   15 FSPEGRLFQVEYAIEAIKLGSTAIGICTNDSVVLAVEKRITSPLMVPKTVEKIVKVDEHIGCATSGLMADARTLIERARVECQNHWFVYNEEMTVESCAQAVSTLAIQF-------GDSGDSDGAAAM-------------------------SRPFGVAILFAG-------------------------IENGKP-----------QLWHMDPSGTYIRYSAKAIGSGSEGAQQNLQDKYTPEMTLSDATDLCLNTLKQVMEE 210          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|999972655|gb|KXJ11829.1| (Proteasome subunit alpha type-5 [Exaiptasia pallida])

HSP 1 Score: 102.834 bits (255), Expect = 1.568e-21
Identity = 73/265 (27.55%), Postives = 114/265 (43.02%), Query Frame = 0
Query:   91 PYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLV-GPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMED 354
             ++PEG + Q+ +A +A+  GS A+ +   +GVVL   +R  SPL+      KI ++D+HI   M+GL+ D R ++ + R+ +Q HWF Y E + L          +T A   L  E                        GD +A   +EG  +R FGV  LF G                         +D   P+           ++ + PSG F+ + A+AIG   + A+  LE  Y   +TL E  + A+ I   VME+
Sbjct:   14 TFSPEGRLFQVEYAIEAIKLGSTAIGIRTSEGVVLAVEKRITSPLMEPSSVEKIVEVDRHIGCAMSGLIADSRTMIDKARVEAQNHWFTYNESISLES--------ITQAVSNLALE-----------------------FGDDDA---REGAMSRPFGVALLFGG-------------------------IDDKGPS-----------LFHLDPSGTFIEYDAKAIGSGSEGAQHALEEAYHKSMTLSEASKSALTILKQVMEE 208          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|919002979|ref|XP_013415229.1| (PREDICTED: proteasome subunit alpha type-5-like isoform X1 [Lingula anatina])

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 73/268 (27.24%), Postives = 116/268 (43.28%), Query Frame = 0
Query:   92 YTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLV-GPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSS 358
            ++PEG I Q+ +A +A+  GS A+ +   +GVVL   +R  SPL+      KI ++D HI   M+GL+ D R +V R R+ +Q HWF Y E + +  +   +S +  +                                GD +A+    G  +R FGV  LFAG                         +D   P            ++ M PSG F+++ A+AIG   + A+  L+  Y   +TL+E  + A+ I   VME+  +S
Sbjct:   15 FSPEGRIFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRVTSPLIEPSSIEKIFEIDHHIGCAMSGLIADSRTMVDRARVEAQNHWFTYNENMSVESVTQSVSNLALA-------------------------------FGDDDAD---PGAMSRPFGVALLFAG-------------------------IDDKGPQ-----------LFHMDPSGTFIQYDAKAIGSASEGAQQTLQEVYHKSMTLKEACKNALTILKQVMEEKLNS 212          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|919002981|ref|XP_013415237.1| (PREDICTED: proteasome subunit alpha type-5-like isoform X2 [Lingula anatina])

HSP 1 Score: 102.064 bits (253), Expect = 2.604e-21
Identity = 73/268 (27.24%), Postives = 116/268 (43.28%), Query Frame = 0
Query:   92 YTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLV-GPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSS 358
            ++PEG I Q+ +A +A+  GS A+ +   +GVVL   +R  SPL+      KI ++D HI   M+GL+ D R +V R R+ +Q HWF Y E + +  +   +S +  +                                GD +A+    G  +R FGV  LFAG                         +D   P            ++ M PSG F+++ A+AIG   + A+  L+  Y   +TL+E  + A+ I   VME+  +S
Sbjct:   15 FSPEGRIFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRVTSPLIEPSSIEKIFEIDHHIGCAMSGLIADSRTMVDRARVEAQNHWFTYNENMSVESVTQSVSNLALA-------------------------------FGDDDAD---PGAMSRPFGVALLFAG-------------------------IDDKGPQ-----------LFHMDPSGTFIQYDAKAIGSASEGAQQTLQEVYHKSMTLKEACKNALTILKQVMEEKLNS 212          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|1191565696|gb|OTF72993.1| (proteasome subunit alpha type-5-like protein [Euroglyphus maynei])

HSP 1 Score: 101.293 bits (251), Expect = 5.012e-21
Identity = 75/269 (27.88%), Postives = 118/269 (43.87%), Query Frame = 0
Query:   91 PYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLL-VGPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSS 358
             ++PEG + Q+ +A +A+  GS A+A+   DGV+L   +R  SPL+ V  T KI ++D HIA   +GL+ D R +V R R+ +QQHWF+Y E++ +           T A   L  +                        GD+++E      P   FG+  LFAG                         VD   P+           ++ M PSG +V   A+AIG   + A+  L+  Y   +T+++  +  + I   VME+  SS
Sbjct:   14 TFSPEGRLFQVEYAIEAIKLGSTAIAVKCTDGVILAVEKRITSPLMDVSATEKISEIDNHIACACSGLMADARTMVDRARVETQQHWFLYNEKMSVES--------CTQAVANLAIQ-----------------------FGDSDSEGSAMSRP---FGLAILFAG-------------------------VDADGPS-----------LFFMDPSGTYVSCDAKAIGSGCEGAQQALQEIYNKSITIDDAIKSVMKILKQVMEEKLSS 212          
BLAST of EWM26245.1 vs. NCBI_GenBank
Match: gi|961079314|ref|XP_014767927.1| (PREDICTED: proteasome subunit alpha type-5-like [Octopus bimaculoides] >gi|918331000|gb|KOF94795.1| hypothetical protein OCBIM_22000646mg [Octopus bimaculoides])

HSP 1 Score: 101.293 bits (251), Expect = 5.339e-21
Identity = 72/284 (25.35%), Postives = 125/284 (44.01%), Query Frame = 0
Query:   91 PYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPT-PKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKGASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVME---DSSSSRVQTRPQHRHEQ 370
             ++PEG + Q+ +A +A+  GS A+ +   DG+VL   +R   PL+V  +  K+ ++D HI   M+GLV D R ++ R R+ +Q HWF Y E++ +  +   +S +  +                                GD +A+    G  +R FGV  LFAG                         +D   P            ++ M PSG F+++ A+AIG   + A+  L+  Y   ++L+  ++ A+ I   VME   DS++  + T  + ++ Q
Sbjct:   14 TFSPEGRLFQVEYAIEAIKLGSTAIGIQTNDGIVLAVEKRVTCPLIVASSIEKVLEIDSHIGCAMSGLVADSRTMIDRARVEAQNHWFTYNEKMSVESVTQAVSNLALA-------------------------------FGDDDAD---PGAMSRPFGVALLFAG-------------------------IDEKGPQ-----------LFHMDPSGTFIQYDAKAIGSGSEGAQQALQDVYHKSMSLDNARKEALKILQQVMEEKLDSTNVEMATVTREKNFQ 227          
The following BLAST results are available for this feature:
BLAST of EWM26245.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108244|gb|EWM26245.1|0.000e+0100.00proteasome alpha5 isoform a [Nannochloropsis gadit... [more]
gi|669330454|gb|KFD70629.1|1.106e-2329.74hypothetical protein M514_12670 [Trichuris suis][more]
gi|669222782|emb|CDW55919.1|1.106e-2329.74proteasome subunit alpha type 5 [Trichuris trichiu... [more]
gi|768432866|ref|XP_011557776.1|7.537e-2229.21PREDICTED: proteasome subunit alpha type-5-like [P... [more]
gi|195027251|ref|XP_001986497.1|8.565e-2227.27GH21393 [Drosophila grimshawi] >gi|193902497|gb|ED... [more]
gi|999972655|gb|KXJ11829.1|1.568e-2127.55Proteasome subunit alpha type-5 [Exaiptasia pallid... [more]
gi|919002979|ref|XP_013415229.1|2.310e-2127.24PREDICTED: proteasome subunit alpha type-5-like is... [more]
gi|919002981|ref|XP_013415237.1|2.604e-2127.24PREDICTED: proteasome subunit alpha type-5-like is... [more]
gi|1191565696|gb|OTF72993.1|5.012e-2127.88proteasome subunit alpha type-5-like protein [Euro... [more]
gi|961079314|ref|XP_014767927.1|5.339e-2125.35PREDICTED: proteasome subunit alpha type-5-like [O... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4460rna4460Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications