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Properties
| Property Name | Value |
|---|
| Product | scavenger receptor class b member 1 |
| Orig transcript id | gnl|cribi|Naga_100003g36.1820.mrna |
| Orig protein id | gnl|cribi|Naga_100003g36.1820 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1107905..1110607 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna445 ID=rna445|Name=rna445|organism=Nannochloropsis gaditana|type=mRNA|length=3912bp
CATGCCGTCCGGAATAAGTCGTTGCGCGTCCGTGTAGCGCTTTTTCTTAC
AAATTACCACAGTTGTTTGACTGACTGATTAAATAATGCAGGACATTTGG
ATAGTGGGCGTTGGCATTTTGCCATCTAAGCCCGTGCCGTCCTCATCCCA
GGAACTTCAGCTTGAAGCAGCGAAAATGTTGAGATCAAGACAAAGGGACA
AGCTTCGACCGTATTTGGTGCTTTACCTTTTCCTCATCCATGTGCTGGTC
CTCCTCGAACAGCAGCGTATTCAAGCCTCCATCGTCGTCGATGAAGCCCT
TTATTCGCGGCAGCTTTACGTCTTGGGACTGCCCGCGCAGCAAAGACTGG
CCGCCTCAAACATTTTGGTGGTAGGATTAGGTGGTGTAGGGGTTGAAATC
ACCAAAAATGTGATCCTGGCTGGGCCTCAGTCTGTGACCCTCATAGACCC
AACACCGGCAAGGATGGTGGACCTTGCTACCCAATACTATCTCGACGAGA
CGAGCTTGGGCCAGTCGCGAGCCATGTGTAGCTATGCCAAATTGAAAGAG
CTGAATCCATTGGTACAGCTCGACCTGCTAGAGCCTTCGAGTATGGACAT
AGAAGCCGTTGCGGAGGCAATAGCGGCAAGCGGACGCAACTTCGATGTGA
TAGTAGCAGCGGACCAGGACAAGGCAAGCGAGGAAGCTCTGAATACGCTA
GCCCGGCGTTTAAAGGCCAAATTTGTGGCCGCGCAGGCACCTGGTCTCTT
TGGGTCCATCTTCTGCGACATGGGCGACGACTTCACCGTCAACGACACGG
ACGGAAAGGAGGCTAAGACGGGCCTGCTCAAATCCTTCGATCCCCTGCCT
ATGACAGGCGAGACCCTGGTGACATTGCGGGAAGGAGAGCGGCACGATCT
AAGCAAAGGGGACCTCGTCTATTTCGAGCGCACGGCTACCGAGGAAGACG
GTCAGACAAAGGACGCAGTCCGAGCCGGCAGCGCGGACCCCGACCTGGAG
ACGGACACCTTTACCGTTAAACGCATCGTCTCGCCCTCATGTTTCACCGT
CCCTGCTAGTGCCAACCTTGTCAAACAAGTCCACCAGTACTCCAACGGCC
GTTTCCGGCAGCTCAAGCAGCCACTGCAGCTCGGATTCCAGCCTTTGACC
TTGGCACGGCAGGCGATGCGGTCGGTGCCCACCGATTTTGGCAAAGCCAG
CCTAGGGCGACAATTAACCCTCCATGCCTGCTTCGAGAGCTTAAAAAGGT
TCAAGACACATGCAGGGGGAAGACTACCCATCCCCGGGAGCGCCACGGAT
GCTGCGGCCTTCAAAAAACTGGTCAAAAGCTGCGATGTTCTGAGCGACGT
CATCAGCAGCCACTCTGCCGCAATTGCCGCCAGGTCTGCCGCGAAACGGC
CCACCTCCAAGACCAGGGCACCAAGCCCACCCGTCTTGGACGAGCAGATT
ATGGAGATCTTTGCCCGCACCTGTCAAGGTTCGCTGGCGCCGATTTGCTC
CTTTGTCGGGGGCACGGCAGCCCAGGAAGTGCTGAAGGCCTGCACGGGCA
CTTTCGTACCCCTCCAGCAATACCTCTTTTTCGACGCGGTGGAGGTTTTG
ACCCCGGAGAGCGGGGAAGATGAATCGCCCGAGGCTTTCTCGGCGAGTCT
CCCCTCGGAAAAGGAGTGCGCCAGTCGCGGGGACAAGTATGATGGCATGC
GAGCTGTGCTCGGATCTCGCTTGATGAAATTGCTCCAAGACCAGGCTATC
TTCGTGGTGGGCGCGGGGGCGATTGGCTGCGAACTGCTCAAAAACCTGGC
TCTCATGGGCGTGGGGCCTCTGACGGTGACCGACAACGACTCGATCGAGA
AGTCGAACCTGAATCGACAATTTCTGTTCCGTGAGAGAGACCTGGGGGCA
CCGAAATCTGAGGCAGCAGCACAAGCCGTGCAACGCCTGAACCCAGACGT
GGAAGTCCGAGCGTTGGTGAGGAAGGTGGGAAAAGAGACGGAGGAATTCT
TCGACGACAATTTCTGGTTCGGGCATGACGTGGTGGCAAACGCGCTGGAC
AATGTCGCCGCCCGCAAGTATGTGGATGGTCGCTGCGTCTACTACCGACG
GCCGTTGCTGGAGAGTGGGACGGAGGGTACCAGCGGGAATGTGCAGGTCG
TGGTGCCCTTTGTCACAGAATCCTACGGCTCCAGCGTGGACCCGCCCGAG
GCCAGTATCCCGGTCTGCACCCTGAAGAGCTTCCCTTACATGATCGAGCA
CTGCATTCAATGGGCGCGTGATTTCTTCGACGGCTACTTTCGCATTCAAC
CCGAGCGCTTGAACGACCTGACGGCGCGTCTGAGCGAAAGCAGCCACAGA
GGAGAGGAGGACGATGCCGCCGCTGCAGCTGTGTTGGCGAGCTTGCGGGC
GCAAACCAGCGATGAAACCTTGCTGCGGGAGCTAGAGGGCTATCTTGTCG
ATCTGGAGATATGGGACCCCGTGCCTTCTGCTCGCCGCTGCGTGAAGTGG
GCCTTGGACCGGTTCCACGAATTGTATCAGAGCAACATCGAAGCCCTGTT
GCGCGAACATCCCCGCGACAGTGTCACGGAGGACGGAGAGCCTTTCTGGT
CGGGCGACCGGCGGATCCCAACCCCGATCGTTTTCGACCAGAGTGATCCC
TTGCACATGGACTTCCTCCTGTCCGCCGCCTTGCTCAAGGCGCGCGTCTT
TAACGTGGTGGATCCGACCACGACTGTGGAGGGCATGAGTGAAACTGTGC
AAGCCACGCTAGATGAGATTCTTGCCTCGGGGTACCAGGCCCCCACCGAG
GTGGTACGGGCGGAGGAAGAGGAAGAAGGGGACCTGGAGGCCAAGGTGCA
GCGCGAGTTTGAGGAAGTGCGGCTGACCATCAAACGCATCGCCAAACGGG
GGGGAGACAACGGCAAAGGGACGGAATGCACAGCGGCGCGGACCAGGCCG
GAAATGTTTGAAAAGGATCAGGACTGGAACGGACACATCGCCTTCATTAC
GAGTGCGAGCAATCTTCGCGCTGCAAATTATGGCTTGGCACGTGCGGATC
GCTTGCAGACGAAGAAAATAGCTGGGCGTATCATTCCTGCGATTGCGACG
ACGACGGCGGTAGTTGCCGGATTGGCGAGCCTGGAACTGTGTAAGCTCGC
TCAGCGAAGCTTGCTAGAAGAAGAGGAGGAGTATTCGGACTTGGAATCTC
AAAACAAAGAAGAGGGATTGTTAAAGCAGCGACGGCGACATCGACGACAT
TATCCCCCTCTTAGTGCATATCGGAACGCCTTCATTAATCTGGCAGGGCC
ATTTTTTGCGCTGACGCAGCCAATGGAAGCTCATCCGATTGCTTTAGGCG
AGCAAGGAGAGGTGTACAATATGTGGGATCGTCTGGAAGTAACGCCGAAA
AAAGATATGACTCTCAAATCTCTACTAGCACACGCCTCAGAGAATTTTGG
CCTGCAAATAACATCCGTGACTTTGCATGGCTCGCACATTTTGTATGCGG
ATTTCATGCACCCCGGCGACGACAATCCAATACTAGGTAAATCCATGACA
GAGCTCGTTGAAGCCGCCATGAAGAGCGAGAATAGGGCAATAGTAAGAAA
AGGAGTTGAAGGTACAAATATACAAGGGATGCCGCTACGGCGGCATTTTG
TAGATTTCGAGATTGAATGCGTGGATGACGCGGGCGATGAAGTTGAAAGT
CCACCGCTTCGATATTTTTTCCCTCACGTGAAAAAACGCAAGAGCAAGGG
CAGAAGGCCGTTGGCACACCGCTGGTGGGGAGGAGTGCTCAAGGCAATTT
CTAAGTAACCAAAGTCTGAGTATTGAAATAGTGATTGAAAGTTTTTTTTA
TAAAATCGGTAAGGCACACAATCAAACTGCTTCAACGAAAGCATACTCAG
TATCCTTTGGTA back to topprotein sequence of rna445 >rna445-protein ID=rna445-protein|Name=rna445|organism=Nannochloropsis gaditana|type=polypeptide|length=683bp
MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVW
GGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTV
LKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEV
GPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRV
TTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWLAPLRRAIEREIDASGLW
KAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDEL
AKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARL
QGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYL
PQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHD
FHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSK
PHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGL
KRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHM
LFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALI
GVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV back to topmRNA from alignment at CM002455.1:1107905..1110607+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna445 ID=rna445|Name=rna445|organism=Nannochloropsis gaditana|type=mRNA|length=2703bp|location=Sequence derived from alignment at CM002455.1:1107905..1110607+ (Nannochloropsis gaditana)
CCACCTTCGCCATATTCGAGTGCCCGATTTAAACATGGCTCCTGTTCTGA
AGCGTACCATCAGCTCTTAGGGAGGCCAAAGTTTTGATGATGAGGTCCGC
AAAATTTGGAGGTTTTGTTAACGGAGACTGCTGTAGCTTGAACGTCATCT
GCATTTTCTTTACCGTGATAATCAATCATCAACTCTCCCCTCCAAACAAG
AAAACCGGAGCACTGCAAGGCAGCAGGAAGCTTCATTGTGGCAGAAGACA
GTGAACATCGACAGCGCCGTCGGCCACAGTCACCATCTCCTCTGCCTATA
GACGGTGCCGGCGACGGAAGTGGCGCGCAAATCTGGTCTTTTGCTTCAAC
CTTaaatcttcctctccttgtgtatcccccttcctcctccttggccgccg
ttGCCGTGGTCACACCGTCActtgaggaagagagcgaaaCCCAAAGGGAG
GCAAGTCAGGTGATGGGCCGGTACGACGAAGATAATGCCCACGCGGAAGC
AAAAAGGGTTGAGTATTCTTCCTTCAAGGATGCTTTAGATGACGGTGACT
CATTTTTTGGCAGCCCGGAGCGTGCCTCCTTTTGCGTCCGTCGTCCAATG
TGTGGTGTCTGGGGTGGACCTCGCGTTTGGTGCATTCGTCGGGCCAGCGA
TCGCTGGGGAGTGCTTTTGATAAGCGTCGCTGTAGTCCTCGGGGTGCTCA
CAGCCTGTGGCCCATTGATAGTGGATCGTCTAGTCGCCCAGGGGATTGAT
GCGCAGACGGTTCTGAAAGGTGCTTCGGGAAAAGCCTACAAGACCTTCGT
GGACAGTGGAGAAAACTTGGGTGTTGAAATCTACTACAGCTTGCACTACC
TCAACCTCACGAACCCGACCGAGCTGTTGGAGGGCACAGCGCTTgcgcgc
ctggaggaagTAGGCCCTTTCGTGTATCGACAACACCGGCACAAATTGAA
CTTGACGTTCGCTTCTGACGGAGAGACAGTGAGCTTTGTCTTGCAAAAGA
CATACGTTTTCGACGAAGACGCCAACGCGGCGACTGGCTTGGTCGACACC
GACGTGCGCGTGACCACGGTGCATCCAGTGATCCAGGTCCTCCAAGGGCA
ACTCCAGAACACCCTTAACGCGCAGCTCAAAGAGATCATTCACCCCGCTA
TCGGTTGGCTGGCGCCTTTGCGGCGCGCGATTGAGCGCGAAATCGATGCC
TCGGGTCTCTGGAAGGCGGTGTACAAGCTAGTGCTCTGCCAAGGCAACCC
CATGGGCGTCTCTCCCTTTACGGTCCAGAGCGCCCGAGATTTGTATTGGG
GCTACCATAATGACAGCGTCCTGTTGACTATGCAGGCATTGGTGGGGGCC
ATAGATGAGCTGGCCAAGCGTGTAGGCAAGAGGGTGTCTCTGCCGGTCAT
CCCCGAAGCCTTCCCGGGACTCCAGCCCAACCTGACTTCCGAGGCGGAGA
CTGCCCGTCGGATCGGCCCCAATGTGGTTTACACGGGGCAAGGGAAAACC
AAGGCACGTCTGCAGGGGTACACGATGTTCCAAAACATGACGCAGGTCCA
CGCATGTCCGGACCCGACCACGGGGGACGCCCCGGCCCCGGGGGAGATGC
CCGCCTGCGACATCTATCAGGCGGACTGGACCAACAGGTCGGCCGTTCGG
CATGGGTACCTCCCGCAGTGGGGAAGCGCGGCTGCCAACGAGGTTCGAGG
TACGGACGGGAGCTTGTTCGCGCACCCCTTAACGGGCCAGGAGACGGTCG
TCACTTTTCAGGAGGATTATCGCCGGTGGATCGAGATGGTGTACGTGGGA
GAGGTGCATGATTTCCACGGGGTTTCGCTGCGTCGTTATGTCTTCAGCCA
GAAGGATTTTCGGAATGACTCGGTCATGTCGGCAGACTGGTACCAAGACA
ATCTGCCGACGGGGTTGTCAAACTTGACGCTCATGGGCGGTTTTCCATTG
TTCTTGAGCAAGCCCCATTTCCTGGAGGCGGACCCGAGCGTGCAGCAGGC
AGTGGAAGGATTGGATCCAGACCCAGAGTCGCACTTGACCTTTATCGATG
CGGAAGAGCGCAGCGGGGTCACGTTTCGGACCCACAAGCGTGTCCAGTTG
AATGCGGGCTTGAAGCGACTCCGATTCCCGTCCTTGTCTCGCATCGAAGC
TTCGTCGTTGGCGACCATCCTGCAGAGGGACTTGAATGAGGCAGAAACAC
GATGTGTGCGTGAGGAAGTGACATGGGACTTTGGCCTGCCCGCGGAGGGG
GATGAACACATGCTCTTCTTGCCGATGGTCAGGTACGATGAAGGCTTCGA
AATGCCTGCATCTTTCGTCAAGGATTTCAAAAAGCAAGTTCTTGGGAGCA
CAAGCGCCGCAAAAACTGTACAGGTGGCGGGTCCTTTGTTTGCAGTCTTA
TTAGCGTTGATCGGAGTGATAATCATCatgagaggaaggcgaaacGAGCA
AGAGCTCGCACGTCGGCGGACACACCGATACAGTACCATACACGAGGGGG
ATATAATGGTGTGAAGAAGATGCGAACATGTGCACAGACGTTGGCGGATG
AAATCAGTAAAAGGGCCATCAACGTGACGATGTAAGATTGGTTATTGATC
ACAGGGGCGCCTCAGACAGGAACCAACATACAGCCACACAAGGCAATGAT
GTCAAGGTGTGGTTTTTGATtaaggaaaaaaatgtatGATAGTTTTAAAA
AAG back to topCoding sequence (CDS) from alignment at CM002455.1:1107905..1110607+ >rna445 ID=rna445|Name=rna445|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at CM002455.1:1107905..1110607+ (Nannochloropsis gaditana)
ATGGGCCGGTACGACGAAGATAATGCCCACGCGGAAGCAAAAAGGGTTGA
GTATTCTTCCTTCAAGGATGCTTTAGATGACGGTGACTCATTTTTTGGCA
GCCCGGAGCGTGCCTCCTTTTGCGTCCGTCGTCCAATGTGTGGTGTCTGG
GGTGGACCTCGCGTTTGGTGCATTCGTCGGGCCAGCGATCGCTGGGGAGT
GCTTTTGATAAGCGTCGCTGTAGTCCTCGGGGTGCTCACAGCCTGTGGCC
CATTGATAGTGGATCGTCTAGTCGCCCAGGGGATTGATGCGCAGACGGTT
CTGAAAGGTGCTTCGGGAAAAGCCTACAAGACCTTCGTGGACAGTGGAGA
AAACTTGGGTGTTGAAATCTACTACAGCTTGCACTACCTCAACCTCACGA
ACCCGACCGAGCTGTTGGAGGGCACAGCGCTTgcgcgcctggaggaagTA
GGCCCTTTCGTGTATCGACAACACCGGCACAAATTGAACTTGACGTTCGC
TTCTGACGGAGAGACAGTGAGCTTTGTCTTGCAAAAGACATACGTTTTCG
ACGAAGACGCCAACGCGGCGACTGGCTTGGTCGACACCGACGTGCGCGTG
ACCACGGTGCATCCAGTGATCCAGGTCCTCCAAGGGCAACTCCAGAACAC
CCTTAACGCGCAGCTCAAAGAGATCATTCACCCCGCTATCGGTTGGCTGG
CGCCTTTGCGGCGCGCGATTGAGCGCGAAATCGATGCCTCGGGTCTCTGG
AAGGCGGTGTACAAGCTAGTGCTCTGCCAAGGCAACCCCATGGGCGTCTC
TCCCTTTACGGTCCAGAGCGCCCGAGATTTGTATTGGGGCTACCATAATG
ACAGCGTCCTGTTGACTATGCAGGCATTGGTGGGGGCCATAGATGAGCTG
GCCAAGCGTGTAGGCAAGAGGGTGTCTCTGCCGGTCATCCCCGAAGCCTT
CCCGGGACTCCAGCCCAACCTGACTTCCGAGGCGGAGACTGCCCGTCGGA
TCGGCCCCAATGTGGTTTACACGGGGCAAGGGAAAACCAAGGCACGTCTG
CAGGGGTACACGATGTTCCAAAACATGACGCAGGTCCACGCATGTCCGGA
CCCGACCACGGGGGACGCCCCGGCCCCGGGGGAGATGCCCGCCTGCGACA
TCTATCAGGCGGACTGGACCAACAGGTCGGCCGTTCGGCATGGGTACCTC
CCGCAGTGGGGAAGCGCGGCTGCCAACGAGGTTCGAGGTACGGACGGGAG
CTTGTTCGCGCACCCCTTAACGGGCCAGGAGACGGTCGTCACTTTTCAGG
AGGATTATCGCCGGTGGATCGAGATGGTGTACGTGGGAGAGGTGCATGAT
TTCCACGGGGTTTCGCTGCGTCGTTATGTCTTCAGCCAGAAGGATTTTCG
GAATGACTCGGTCATGTCGGCAGACTGGTACCAAGACAATCTGCCGACGG
GGTTGTCAAACTTGACGCTCATGGGCGGTTTTCCATTGTTCTTGAGCAAG
CCCCATTTCCTGGAGGCGGACCCGAGCGTGCAGCAGGCAGTGGAAGGATT
GGATCCAGACCCAGAGTCGCACTTGACCTTTATCGATGCGGAAGAGCGCA
GCGGGGTCACGTTTCGGACCCACAAGCGTGTCCAGTTGAATGCGGGCTTG
AAGCGACTCCGATTCCCGTCCTTGTCTCGCATCGAAGCTTCGTCGTTGGC
GACCATCCTGCAGAGGGACTTGAATGAGGCAGAAACACGATGTGTGCGTG
AGGAAGTGACATGGGACTTTGGCCTGCCCGCGGAGGGGGATGAACACATG
CTCTTCTTGCCGATGGTCAGGTACGATGAAGGCTTCGAAATGCCTGCATC
TTTCGTCAAGGATTTCAAAAAGCAAGTTCTTGGGAGCACAAGCGCCGCAA
AAACTGTACAGGTGGCGGGTCCTTTGTTTGCAGTCTTATTAGCGTTGATC
GGAGTGATAATCATCatgagaggaaggcgaaacGAGCAAGAGCTCGCACG
TCGGCGGACACACCGATACAGTACCATACACGAGGGGGATATAATGGTGT
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