EWM30303.1, cds445 (CDS) Nannochloropsis gaditana

Overview
NameEWM30303.1
Unique Namecds445
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1108367..1110418 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30303.1
Productscavenger receptor class b member 1
Orig transcript idgnl|cribi|Naga_100003g36.1820.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1108367..1110418 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002159CD36
Homology
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|585112962|gb|EWM30303.1| (scavenger receptor class b member 1 [Nannochloropsis gaditana])

HSP 1 Score: 1417.14 bits (3667), Expect = 0.000e+0
Identity = 683/683 (100.00%), Postives = 683/683 (100.00%), Query Frame = 0
Query:    1 MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVWGGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 683
            MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVWGGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV
Sbjct:    1 MGRYDEDNAHAEAKRVEYSSFKDALDDGDSFFGSPERASFCVRRPMCGVWGGPRVWCIRRASDRWGVLLISVAVVLGVLTACGPLIVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 683          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|553189527|ref|XP_005855019.1| (scavenger receptor class B, member 1, partial [Nannochloropsis gaditana CCMP526] >gi|422294041|gb|EKU21341.1| scavenger receptor class B, member 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 352/354 (99.44%), Postives = 353/354 (99.72%), Query Frame = 0
Query:  330 TARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEASSLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 683
            TARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQ+DFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEA SLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV
Sbjct:    1 TARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQEDFRNDSVMSADWYQDNLPTGLSNLTLMGGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLRFPSLSRIEALSLATILQRDLNEAETRCVREEVTWDFGLPAEGDEHMLFLPMVRYDEGFEMPASFVKDFKKQVLGSTSAAKTVQVAGPLFAVLLALIGVIIIMRGRRNEQELARRRTHRYSTIHEGDIMV 354          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|1209983912|ref|XP_021385249.1| (lysosome membrane protein 2-like isoform X2 [Lonchura striata domestica])

HSP 1 Score: 134.806 bits (338), Expect = 4.886e-30
Identity = 138/499 (27.66%), Postives = 215/499 (43.09%), Query Frame = 0
Query:   69 LISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
            L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+ + +     VD  +R   +  V                      A+ W    PL+ A E              L+L Q      S FTV+S   L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY     D  GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  R  KR+Q+N  +++L
Sbjct:    6 LVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHVQFLDNGTKVSALNPKTYVFEPEKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPLQFATE------------VLLLLYQE-----SLFTVRSVHQLLWGY-KDRLLSTIHVLHPEIDPVFGLFSKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVY-DSSGDVAGVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPRKEYHETFLDINPLTGLVLRAAKRMQVNVHVRKL 395          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|1209983910|ref|XP_021385248.1| (lysosome membrane protein 2-like isoform X1 [Lonchura striata domestica] >gi|1208029409|gb|OWK55893.1| Lysosome membrane protein 2 [Lonchura striata domestica])

HSP 1 Score: 134.806 bits (338), Expect = 5.056e-30
Identity = 138/502 (27.49%), Postives = 216/502 (43.03%), Query Frame = 0
Query:   66 GVLLISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
             + L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+ + +     VD  +R   +  V                      A+ W    PL+ A E              L+L Q      S FTV+S   L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY     D  GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  R  KR+Q+N  +++L
Sbjct:    3 SLCLVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHVQFLDNGTKVSALNPKTYVFEPEKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPLQFATE------------VLLLLYQE-----SLFTVRSVHQLLWGY-KDRLLSTIHVLHPEIDPVFGLFSKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVY-DSSGDVAGVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPRKEYHETFLDINPLTGLVLRAAKRMQVNVHVRKL 395          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|929504868|ref|XP_014126182.1| (PREDICTED: lysosome membrane protein 2 isoform X2 [Zonotrichia albicollis])

HSP 1 Score: 132.494 bits (332), Expect = 2.670e-29
Identity = 138/501 (27.54%), Postives = 217/501 (43.31%), Query Frame = 0
Query:   69 LISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVY--VGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
            L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+ + +     VD  +R   +  V                      A+ W    PL+ A E              L+L Q      S FTV+S  +L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY   G V    GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  +  KR+Q+N  +++L
Sbjct:    6 LVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHIQFLDNGTKVSALNPKTYVFEPEKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPLQFATE------------VLLLLYQE-----SLFTVRSVHELLWGY-KDRLLSTIHVLHPEIDPIFGLFSKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVYDSSGAVA---GVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPKKEYHETFLDINPLTGLVLQAAKRMQVNVHVRKL 395          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|929504864|ref|XP_014126181.1| (PREDICTED: lysosome membrane protein 2 isoform X1 [Zonotrichia albicollis])

HSP 1 Score: 132.494 bits (332), Expect = 3.116e-29
Identity = 138/504 (27.38%), Postives = 218/504 (43.25%), Query Frame = 0
Query:   66 GVLLISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVY--VGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
             + L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+ + +     VD  +R   +  V                      A+ W    PL+ A E              L+L Q      S FTV+S  +L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY   G V    GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  +  KR+Q+N  +++L
Sbjct:    3 SLCLVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHIQFLDNGTKVSALNPKTYVFEPEKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPLQFATE------------VLLLLYQE-----SLFTVRSVHELLWGY-KDRLLSTIHVLHPEIDPIFGLFSKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVYDSSGAVA---GVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPKKEYHETFLDINPLTGLVLQAAKRMQVNVHVRKL 395          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|1190388001|ref|XP_020844097.1| (lysosome membrane protein 2 [Phascolarctos cinereus])

HSP 1 Score: 132.109 bits (331), Expect = 3.706e-29
Identity = 119/476 (25.00%), Postives = 200/476 (42.02%), Query Frame = 0
Query:   86 IVDRLVAQGIDAQTVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWLAPLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKAR---LQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQETVV-TFQEDYRRWIEMVYVGEVHDFHGVSLRRYVFSQKDFRNDSVMSADWYQ--DNLPTGLSNLTLM-GGFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRLR 554
            +  + V + I+  TVLK  +        D+ EN    IY   ++ N+TNP E+L+G    R+EEVGP+ YR++R + N+ F  +G  +S    KTY+F +D +     VD  +R   + PVI  ++     T  + LKEI+                     GL K   + +           F + +  +L WGY                DEL   +   +  P +P+ F                    + Y   G +      L G   + N T++                         +W  R +     L  W S   N + GTDG+ F HPL  +E ++  F  D+ R + + +  ++    G+   R+    + F N+S  S       + L +G+ N+++   G P+FLS PHF +AD +   AV+G++P+ E H TF+D    +G+  R  KR+Q+N  ++++ 
Sbjct:   28 VFQKAVDRAIEQNTVLKNGT-----EVFDTWENPPPPIYMQFYFFNVTNPDEILQGED-PRVEEVGPYTYREYRPRENIHFWDNGTKISAANPKTYIFQQDLSVGDPEVDL-IRTLNI-PVITAMEW----TRISLLKEILE--------------------GLLKTYQQKL-----------FVIHTVHELLWGYK---------------DELFSLIS--IFKPDVPQYF-------------------GLFYGKNGTSDGDYLFLTGEDSYLNFTKI------------------------VEWNGRRS-----LNWWTSEKCNMINGTDGNSF-HPLVSKEEILYVFASDFCRSVYLTF-SDIGSVEGIPSLRFSLPPEMFANNSDNSCFCTPSGNCLGSGVLNVSVCKNGVPIFLSSPHFYQADENFISAVKGMNPNKEDHETFLDINPLTGIILRGSKRLQVNVHIRQIE 393          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|998683397|ref|XP_015479198.1| (PREDICTED: lysosome membrane protein 2 isoform X2 [Parus major])

HSP 1 Score: 130.954 bits (328), Expect = 1.027e-28
Identity = 137/501 (27.35%), Postives = 217/501 (43.31%), Query Frame = 0
Query:   69 LISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVY--VGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
            L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+ + +     VD  +R   +  V                      A+ W    P++ A E              L+L Q      S FTV+S  +L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY   G V    GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  +  KR+Q+N  +++L
Sbjct:    6 LVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHVQFLDNGTKVSALNPKTYVFEPEKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPMQFATE------------VLLLLYQE-----SLFTVRSVHELLWGYR-DRLLATIHVLHPEIDPIFGLFNKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVYDSSGAVA---GVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPRKEYHETFLDINPLTGLVLQAAKRMQVNVHVRKL 395          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|998683395|ref|XP_015479197.1| (PREDICTED: lysosome membrane protein 2 isoform X1 [Parus major])

HSP 1 Score: 130.568 bits (327), Expect = 1.377e-28
Identity = 137/501 (27.35%), Postives = 217/501 (43.31%), Query Frame = 0
Query:   69 LISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVY--VGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
            L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+ + +     VD  +R   +  V                      A+ W    P++ A E              L+L Q      S FTV+S  +L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY   G V    GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  +  KR+Q+N  +++L
Sbjct:    6 LVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHVQFLDNGTKVSALNPKTYVFEPEKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPMQFATE------------VLLLLYQE-----SLFTVRSVHELLWGYR-DRLLATIHVLHPEIDPIFGLFNKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVYDSSGAVA---GVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPRKEYHETFLDINPLTGLVLQAAKRMQVNVHVRKL 395          
BLAST of EWM30303.1 vs. NCBI_GenBank
Match: gi|543377213|ref|XP_005531812.1| (PREDICTED: lysosome membrane protein 2 [Pseudopodoces humilis])

HSP 1 Score: 129.798 bits (325), Expect = 2.279e-28
Identity = 137/501 (27.35%), Postives = 216/501 (43.11%), Query Frame = 0
Query:   69 LISVAVV-LGVLTACGPLIVDRLVAQGIDAQ----TVLKGASGKAYKTFVDSGENLGVEIYYSLHYLNLTNPTELLEGTALARLEEVGPFVYRQHRHKLNLTFASDGETVSFVLQKTYVFDEDANAATGLVDTDVRVTTVHPVIQVLQGQLQNTLNAQLKEIIHPAIGWL--APLRRAIEREIDASGLWKAVYKLVLCQGNPMGVSPFTVQSARDLYWGYHNDSVLLTMQALVGAIDELAKRVGKRVSLPVIPEAFPGLQPNLTSEAETARRIGPNVVYTGQGKTKARLQGYTMFQNMTQVHACPDPTTGDAPAPGEMPACDIYQADWTNRSAVRHGYLPQWGSAAANEVRGTDGSLFAHPLTGQ-ETVVTFQEDYRRWIEMVY--VGEVHDFHGVSLRRYVFSQKDFRNDSVMSAD----WYQDNLP-TGLSNLTLMG-GFPLFLSKPHFLEADPSVQQAVEGLDPDPESHLTFIDAEERSGVTFRTHKRVQLNAGLKRL 553
            L++V V+ + +L A   L+V  +    +D Q    TVLK  +    +TF ++ E+    +Y   ++ N+TNP E+L+G A   +EE+GP+ YR++R ++++ F  +G  VS +  KTYVF+   +     VD  +R   +  V                      A+ W    P++ A E              L+L Q      S FTV+S  +L WGY  D +L T+  L   ID +     K                N T + E                    L G T + N +++                         +W  + +     L  W + A N + GTDG+ F HPL  + E +  F  D+ R + +VY   G V    GV   R+V S   F N SV  A+        N P TG+ N+++   G P+FLS PHF +ADP   + +EG+ P  E H TF+D    +G+  +  KR+Q+N  +++L
Sbjct:    6 LVTVGVLAMTLLIASISLLVAHVFQTVVDLQVKQGTVLKNGT----ETF-EAWEDPPPPVYMQFYFFNVTNPLEVLQG-ATPLVEEIGPYTYREYRPRVHVQFLDNGTKVSALNPKTYVFEPQKSVGDPEVDL-IRTVNIPAVT---------------------AMEWTRSTPMQFATE------------VLLLLYQE-----SLFTVRSVHELLWGYR-DRLLATIHVLHPEIDPIFGLFNKM---------------NGTDDGE-----------------YVFLSGETNYLNFSRI------------------------VEWKGKES-----LSWWTTEACNMINGTDGTSF-HPLISKDENIYIFSSDFCRSLFLVYDSSGAVA---GVPTFRFVPSSMVFANTSVNPANAGFCVPAGNCPGTGVLNVSVCKQGAPIFLSAPHFYQADPKFVEDIEGMHPRKEYHETFLDINPLTGLVLQAAKRMQVNVHVRKL 395          
The following BLAST results are available for this feature:
BLAST of EWM30303.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112962|gb|EWM30303.1|0.000e+0100.00scavenger receptor class b member 1 [Nannochlorops... [more]
gi|553189527|ref|XP_005855019.1|0.000e+099.44scavenger receptor class B, member 1, partial [Nan... [more]
gi|1209983912|ref|XP_021385249.1|4.886e-3027.66lysosome membrane protein 2-like isoform X2 [Lonch... [more]
gi|1209983910|ref|XP_021385248.1|5.056e-3027.49lysosome membrane protein 2-like isoform X1 [Lonch... [more]
gi|929504868|ref|XP_014126182.1|2.670e-2927.54PREDICTED: lysosome membrane protein 2 isoform X2 ... [more]
gi|929504864|ref|XP_014126181.1|3.116e-2927.38PREDICTED: lysosome membrane protein 2 isoform X1 ... [more]
gi|1190388001|ref|XP_020844097.1|3.706e-2925.00lysosome membrane protein 2 [Phascolarctos cinereu... [more]
gi|998683397|ref|XP_015479198.1|1.027e-2827.35PREDICTED: lysosome membrane protein 2 isoform X2 ... [more]
gi|998683395|ref|XP_015479197.1|1.377e-2827.35PREDICTED: lysosome membrane protein 2 isoform X1 ... [more]
gi|543377213|ref|XP_005531812.1|2.279e-2827.35PREDICTED: lysosome membrane protein 2 [Pseudopodo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna445rna445Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications