rna4446, rna4446 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4446
Unique Name	rna4446
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2857
Alignment location	CM002463.1:611750..614607 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100025g45.7489.mrna
Orig protein id	gnl\|cribi\|Naga_100025g45.7489
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:611750..614607 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g45	gene4290	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26198.1	cds4435	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4446	rna4446-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:611750..614607-
coding sequence from alignment at CM002463.1:611750..614607-

mRNA sequence

>rna4446 ID=rna4446|Name=rna4446|organism=Nannochloropsis gaditana|type=mRNA|length=2857bp
CGTATTCGCTGCACGTCAAGCTGCTGAACCAGACTTGTTACTAGGACCCG
TTCCAATTTTGCAGGCTGATGAAATTGAAATATATGTTTGGCACGTTCTA
AAAGTTGCATATCATCACGCGCTGTAATGACCGTTAAACGAGCATGGTCC
TTGCCTCAGCGATGTGGTCGTTTAAAAGGGTTTCGTAACAGCATGGCCCA
CCTACCGGGCGCGTAAACGTGATCAATTCTGCCGCTTCATCATAACAGGG
GACATTCCATCCTTCCTTTTGCGGCGCAAAAGGTCAGCTGATGACCCTAC
CTCGAGCAGAACCCTCCCTTGCCAACCTCCCGTACATGTCCTCTCTTCTC
TCGGGCTCCCTGCGGCAAGAAAAGCAGCAGCTCCATCACGACTACCGCGA
CCACAGAGATGACGCGCCCCCTTTTTTCGGTGCCTCCTCTACTAGTACAT
CTCCCCTTCGTTCTATCGATCGCAGTAAGGCGCCCTCCAACACGGGTTTA
AATTCTGTCCATCACCGTTATCAATGCGGTGACGCTCCATCAATCGCCTC
GTACTCCCCAACGCATCCGCACTCGGTGCCCTCCCGCCCGCATCTCCTTG
ACGACTCCGTCCCTCCTGCCTCCGCCGACCCCCCCCTGTACGATTCCAGC
CGTTTGCAGAGCTTGATCATGAGCAAGGAGAAGGAGCTTCACGACATCAA
TCAATTTCGTATCCACACTCTCGAGTCCTTACTGAAAGACCGGGAGCGCG
CCCTGAAAGAAAACAACGACAAAATTCAAGGCCTAAAAGCAGATTTTCAG
TATAACCTGCAGCTCATCGAAGAGCGGGATGCTGAGCTCGACAGGGCTGA
CGCCACGGTGGCCAAGCTGGAAGACACCGTGCGAGCGCAAGCCCATGAGA
GTGAGGCCTTGAGGCAGGCGCTTGCGGAGGCGGAACAAGGGAGCAAGCGG
CAAGCGGCTCGAATCGCGGCGGACATGGAAGCCGCCTTCGCCCGGCGCGA
GCAGGAGATGGGCCAGGCAGCCGCCGAGCAGGGCCGTAAACAGGAAGAGG
AACTGTCGCGTCAGCATAGAGCGCACATCGAGTCCCTGAGGCAAGAGTGG
GAGAGCGAGTGGCTCGCCAAGGAAGAAGCTTGGCGAGAAAGGGTCGATCG
TCTGGGGGAGGAGACGAGCCGGATGGAGAGAGAGAGGGCAGCCCGCGAGC
AAGCGGTGGCCCGAGGCGCGGAGCTGGAAGCCGCCCTCCAGGAGCAGCGT
GGGAAATTTTCGGCTTTGGCCGCAGAGAATAAGGAGCTGCGGGGCCACAT
GCATCGCTTGGCGGCACGGCACGAGGAGCGGATGGAGGAGCTGTTGAGGA
CCTTGCGGGCTGCCGAGACGGCCTTGGAGGAGAGCCAGCGGGAGGCAGCG
GCTGCCAATGCCTCTAAAGAGCGGGCGCATGAGCAGGCAATTCGAGATGC
TGTGCACAAGGGGGAGATGAGGCTGTCTGCGGCCAAGGACGAAGTCGCCC
GGGCCGAGGAGCGCGCTGGGAGAGCCGACCAGGCCCTCCGGGAGGTGCGG
CGGGAGATGGAGGAGAGGATGGCCACCAGGCTGCGGGAGGAGGACGCGAG
GGAGGGTCTGCACGCCCAGGAGGTGGAGAGGAAGGAGGCGCTCCTTGTCA
AAATGAAATCTCAGCTGTGGGAGTCGGAGGCTGAGGGACGCGAGCTGACC
ATGCGGGTGGGGGACCTGGGGAAGAGAATTGAGGAGAAAGATAGGGAGCT
GGTACGAACAAGGGAACAGCTGGAGCAATTTCGGACGTTGTTGGTAGAGG
AGCGACAGGAATCGGAGCGCCGAGTGGCGGAGGAGGGACAGGGGAGACAT
CCCGGAGGAAAGACGGTGGAGGTTGAAGAATTGAAGGCAGAGCTTCGCGC
GAGTCAAAGAGAGGCGTCGACTTTGCGGGCTCGCGCGGCAGATTTAGAGG
ACGTTGCGCGGCGATCCACTCCGAAGGGGGATGAACGAGCCGCGAGGCAG
CAGGAAGCGGTGTTGGATGACACACTGGCGGCAAGGAGGACGGCTTCCCT
GGTGGAAGAAGGAGCTTTGGTGCAAGAAAACGTCCGGTTGCGGACGATCA
TATCCGACATGCGCCATGAAATGGAGCGTCTCACGCTAGCGGACAAGGGA
GGGAGGGCTCGGAGTGGACAAGGCCGGGGGCAGGGAGGGGACCGGGAGGA
TCATGCCACTGCCGCAGGAGACGAGGCCGTGGGAGTGTCCATCCCCTTTG
CCGCGACCTCGACGGAGGGAAAACTCGGCAACATGCTGCTTTCAGAGAAT
CGACGCCTGCGGGAGGAAAACAAGAAGCTCTCGGGCACTTGTGAGAAACT
CATGGGTATGAGCAACGAGCTGAACGCGCGCTTGAATAAGCTATCGACTT
GGACTCTCCAGGGGGGGGTCGAGGAGGCAAGAGGCATCGATGGGATGGAG
AAGGGGCCAGTGCGGGCAAAGGGTGGGAAGCCACGGTCGTTGCATCGCAC
AGATTCTCCTCCTCCTTCCGCCCAGGCGTCTTCACGAGAGGCATCCCTGA
GCATAGCAGGCCGGTCTGCTGCTGTGGCCACCTCCAAGGCAGATTATCAG
GCTCCCGGCTCGTTTTTAGCCTCGGCACGGGAGACACAGGGGCAAAAAAA
TGCCCTCAACCGCCTCAGAAGTCGGACAGCGGCATCCGGTGTGGCCGCAC
TGAGGCAGAAGGTGCGAAATTACAATGAGCGATGAAGCTACAGCGATGTC
AATCTTTATAGAATGCTACGAGCTGGGGTAGCAAAATTGACGGTAAAGCA
CAGCCTTAAATGTTTGAGATTTGTTCAGTGTCGAAACAATGTACAAAAAT
TGAGACT

protein sequence of rna4446

>rna4446-protein ID=rna4446-protein|Name=rna4446|organism=Nannochloropsis gaditana|type=polypeptide|length=882bp
MNNVLLGAAGFGRPDLEEKEGFVEEREGRNFEAKGGEEAGEDEEEEEGEG
LEEGREEEEEVSGQEEEEARMATLEAASRLFLETLLLTEGGAWHLVTGQG
LAWPDLGGREGDSPSSSALAWRNVRLQPSGTGDGGMTIPAQTAKGQRTLP
TEVLELNARLVALLVEGVGDCGEALYAQLVFLQERRRRTQGAGENSGTGA
GTGGRWMRAWERFLMLCLFPLVEKLGDPHPVVQQAALTTLYRLARAQETL
VGQSAKERKGKEADTNVSRAGSRPQEGEEGVVGRLLAANLDYLVEALCAH
VRKSQGRTSRSGSQEGGRLSFPLAPSVLEALVAYAGGQASLALIRELARV
VLEVVDMEGLRCGHRYAYEMMRVLRAMGQAVPLPGDGPRSKDGEGAGVAL
EGGEGGRRENRAKKVPKVSRVPAAAYWKAKILAEFESSEEGDGGNPGGES
AQHASETNPEAYFKAYHQAQSAERKAQRHETEEPLEEKLEIEKLFPEATK
GAKEKETWEGGSGEEEEGEETDEDDKPTSEESLILEIIERCCYFLAYPSL
FIQHQSLAVLRETLSRLSSRRLVLLPTVHRVWPAVMARLRACASSIGGPR
SRRPGQDEKDMDLSAAYLLVVEGLDMVAGLAGLCGDYLSFKFTEELWPVL
KILLLASAKSFHERRAGGPRAIRVSRMAGDASTASSSHVPALGQKGLVLP
KQCPDQTALAETDNDRRGQLGGEPLWDGLNLHQGYRERERQTLQHRAEAA
LVHCLHSFVASEDAFRYCVPLVHEIGQSCLFLLGCAPNSPSAGDALILFR
ALASLDGAALWPLLMAAAGWDVSFRPPRQGIGVGEGRGDDGEGDGLRVRK
DKAGEKFARYHADILLKYVESGEIEEMAWCVS

mRNA from alignment at CM002463.1:611750..614607-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4446 ID=rna4446|Name=rna4446|organism=Nannochloropsis gaditana|type=mRNA|length=2858bp|location=Sequence derived from alignment at CM002463.1:611750..614607- (Nannochloropsis gaditana)
ATGAACAATGTGTTGCTGGGAGCGGCGGGTTTCGGAAGGCCCGACCTGGA
AGAGAAGGAGGGATTCGTGGAGGAGAGGGAAGGGAGGAATTTCGAGGCGA
AGGGGGGGGAAGAAGCGGGAGAGGACGAGGAGGAAGAGGAGGGGGAGGGC
CTGGAGGAGGGAAGGGAAGAAGAGGAAGAGGTCTCGGGACAAGAAGAAGA
GGAAGCGAGGATGGCAACGCTGGAAGCCGCGTCCCGTCTCTTTCTTGAGA
CTTTGTTACTGACTGAGGGCGGAGCGTGGCACCTGGTCACAGGACAGGGC
TTGGCATGGCCCGACCTAGGAGGGAGGGAGGGAGACAGTCCCTCATCCAG
TGCACTAGCGTGGCGGAATGTGCGTCTTCAGCCCTCCGGAACGGGTGACG
GGGGAATGACCATCCCGGCTCAGACGGCGAAAGGGCAGAGGACGTTGCCA
ACCGAGGTGCTGGAGCTGAACGCCCGGCTTGTGGCCCTGCTGGTGGAAGG
GGTGGGCGACTGCGGGGAGGCGCTCTATGCTCAGCTGGTTTTCTTGCAGG
AACGAAGGAGGAGGACGCAGGGGGCTGGAGAAAATTCAGGGACGGGTGCA
GGGACAGGGGGCCGCTGGATGCGAGCCTGGGAGCGGTTTCTTATGCTCTG
CCTCTTCCCCTTGGTAGAGAAGCTTGGAGACCCCCATCCGGTAGTGCAAC
AGGCAGCACTGACGACTCTATACCGTCTTGCTCGGGCCCAAGAGACCCTG
GTGGGGCAAAGCGCCAAGGAAAGGAAGGGGAAAGAGGCGGACACCAACGT
TTCCAGGGCGGGAAGCCGTCCACAGGAAGGGGAGGAGGGAGTCGTAGGGA
GACTATTGGCGGCAAACTTGGATTACCTTGTGGAAGCCTTATGTGCTCAC
GTCCGCAAGTCGCAAGGGCGAACCAGCCGGAGTGGAAGCCAGGAAGGCGG
GAGGCTCTCCTTTCCCTTGGCTCCGTCAGTGCTAGAGGCATTGGTTGCCT
ACGCGGGGGGGCAAGCTTCGCTGGCATTGATCCGAGAGTTAGCACGCGTG
GTTTTGGAGGTCGTCGATATGGAAGGCCTTCGGTGCGGCCATAGGTACGC
GTACGAAATGATGCGCGTCCTCCGAGCCATGGGGCAGGCGGTGCCCTTGC
CCGGGGATGGTCCTCGCTCCAAGGACGGGGAAGGAGCTGGTGTCGCGCTG
GAAGGAGGAGAGGGCGGGAGGAGAGAGAATCGGGCAAAAAAGGTGCCGAA
AGTGAGTCGGGTCCCAGCTGCTGCGTATTGGAAAGCGAAGATATTGGCTG
AGTTTGAAAGTAGCGAGGAAGGGGATGGAGGGAACCCTGGGGGGGAATCT
GCGCAGCACGCCTCGGAGACAAACCCAGAGGCATATTTCAAAGCGTACCA
CCAGGCCCAGTCTGCAGAAAGGAAGGCCCAAAGACACGAGACCGAGGAGC
CCTTGGAGGAAAAATTGGAGATTGAGAAGCTTTTCCCTGAGGCCACGAAG
GGGGCCAAGGAGAAAGAGACTTGGGAAGGTGGCAGCGGAGAGGAGGAAGA
AGGGGAGGAAACGGACGAGGACGACAAACCCACCAGCGAAGAATCCTTGA
TCCTGGAAATCATCGAACGTTGTTGCTACTTCCTGGCCTACCCGAGCTTG
TTCATTCAGCACCAGTCATTGGCCGTTCTTCGGGAGACCCTCTCAAGACT
ATCCTCGCGCCGCCTCGTTCTTCTACCGACCGTGCACCGCGTCTGGCCGG
CCGTGATGGCACGGCTGCGGGCGTGTGCGTCCTCCATTGGGGGCCCGAGA
AGTCGACGCCCGGGCCAGGACGAGAAGGATATGGACCTGTCTGCCGCGTA
CCTGTTGGTCGTTGAAGGGCTCGATATGGTCGCGGGGCTGGCAGGGTTGT
GCGGTGACTACCTTTCTTTCAAGTTCACGGAAGAGCTCTGGCCGGTGTTG
AAGATACTCCTGTTGGCATCGGCGAAGTCTTTCCATGAACGACGGGCAGG
AGGACCACGGGCGATAAGGGTGTCTAGAATGGCTGGGGATGCATCGACCG
CTTCGAGTTCTCATGTGCCCGCCTTGGGCCAAAAAGGCCTCGTGCTACCC
AAGCAATGCCCGGATCAGACGGCTCTCGCAGAAACGGACAACGATAGGAG
AGGACAGCTGGGCGGGGAGCCTCTGTGGGATGGCCTCAATCTTCACCAGG
GATACAGAGAGCGAGAGAGGCAAACATTGCAACATCGGGCAGAGGCAGCC
CTGGTGCACTGCTTGCATTCTTTCGTTGCGAGTGAAGACGCCTTCCGCTA
TTGCGTTCCTCTCGTCCACGAAATTGGTCAGAGTTGTCTGTTCTTGCTCG
GGTGTGCTCCGAACAGTCCAAGCGCAGGGGACGCTCTTATCCTCTTTCGT
GCCTTGGCGAGTCTAGACGGGGCCGCCTTATGGCCTTTGCTGATGGCCGC
TGCGGGATGGGACGTTAGCTTTCGCCCTCCTAGGCAGGGGATTGGAGTGG
GCGAGGGGAGGGGGGATGACGGAGAGGGGGACGGGTTGAGGGTTCGGAAG
GACAAGGCGGGGGAGAAGTTCGCGCGCTACCACGCCGACATATTGCTAAA
ATACGTCGAAAGTGGGGAGATTGAAGAGATGGCATGGTGTGTCTCATAGA
TTTGAATGAGAAGGTGGTTAAAATTGTGCCCCAATAGTGTAGACCCAACG
TTTGTAAGAATGTTTTCTACCAAAATATAAAAGCGCAATATCTCCTGAGT
GCTTTTGCACCTTAGTCTCACCCTCAAATTTTAGGTCCGAGGTGAGAGAA
AAGAAAAGCTTCGCTGAAGGAACAAGGATTCACCGGGGTTGTAAGTCTCA
ATTTTTGT

Coding sequence (CDS) from alignment at CM002463.1:611750..614607-

>rna4446 ID=rna4446|Name=rna4446|organism=Nannochloropsis gaditana|type=CDS|length=2649bp|location=Sequence derived from alignment at CM002463.1:611750..614607- (Nannochloropsis gaditana)
ATGAACAATGTGTTGCTGGGAGCGGCGGGTTTCGGAAGGCCCGACCTGGA
AGAGAAGGAGGGATTCGTGGAGGAGAGGGAAGGGAGGAATTTCGAGGCGA
AGGGGGGGGAAGAAGCGGGAGAGGACGAGGAGGAAGAGGAGGGGGAGGGC
CTGGAGGAGGGAAGGGAAGAAGAGGAAGAGGTCTCGGGACAAGAAGAAGA
GGAAGCGAGGATGGCAACGCTGGAAGCCGCGTCCCGTCTCTTTCTTGAGA
CTTTGTTACTGACTGAGGGCGGAGCGTGGCACCTGGTCACAGGACAGGGC
TTGGCATGGCCCGACCTAGGAGGGAGGGAGGGAGACAGTCCCTCATCCAG
TGCACTAGCGTGGCGGAATGTGCGTCTTCAGCCCTCCGGAACGGGTGACG
GGGGAATGACCATCCCGGCTCAGACGGCGAAAGGGCAGAGGACGTTGCCA
ACCGAGGTGCTGGAGCTGAACGCCCGGCTTGTGGCCCTGCTGGTGGAAGG
GGTGGGCGACTGCGGGGAGGCGCTCTATGCTCAGCTGGTTTTCTTGCAGG
AACGAAGGAGGAGGACGCAGGGGGCTGGAGAAAATTCAGGGACGGGTGCA
GGGACAGGGGGCCGCTGGATGCGAGCCTGGGAGCGGTTTCTTATGCTCTG
CCTCTTCCCCTTGGTAGAGAAGCTTGGAGACCCCCATCCGGTAGTGCAAC
AGGCAGCACTGACGACTCTATACCGTCTTGCTCGGGCCCAAGAGACCCTG
GTGGGGCAAAGCGCCAAGGAAAGGAAGGGGAAAGAGGCGGACACCAACGT
TTCCAGGGCGGGAAGCCGTCCACAGGAAGGGGAGGAGGGAGTCGTAGGGA
GACTATTGGCGGCAAACTTGGATTACCTTGTGGAAGCCTTATGTGCTCAC
GTCCGCAAGTCGCAAGGGCGAACCAGCCGGAGTGGAAGCCAGGAAGGCGG
GAGGCTCTCCTTTCCCTTGGCTCCGTCAGTGCTAGAGGCATTGGTTGCCT
ACGCGGGGGGGCAAGCTTCGCTGGCATTGATCCGAGAGTTAGCACGCGTG
GTTTTGGAGGTCGTCGATATGGAAGGCCTTCGGTGCGGCCATAGGTACGC
GTACGAAATGATGCGCGTCCTCCGAGCCATGGGGCAGGCGGTGCCCTTGC
CCGGGGATGGTCCTCGCTCCAAGGACGGGGAAGGAGCTGGTGTCGCGCTG
GAAGGAGGAGAGGGCGGGAGGAGAGAGAATCGGGCAAAAAAGGTGCCGAA
AGTGAGTCGGGTCCCAGCTGCTGCGTATTGGAAAGCGAAGATATTGGCTG
AGTTTGAAAGTAGCGAGGAAGGGGATGGAGGGAACCCTGGGGGGGAATCT
GCGCAGCACGCCTCGGAGACAAACCCAGAGGCATATTTCAAAGCGTACCA
CCAGGCCCAGTCTGCAGAAAGGAAGGCCCAAAGACACGAGACCGAGGAGC
CCTTGGAGGAAAAATTGGAGATTGAGAAGCTTTTCCCTGAGGCCACGAAG
GGGGCCAAGGAGAAAGAGACTTGGGAAGGTGGCAGCGGAGAGGAGGAAGA
AGGGGAGGAAACGGACGAGGACGACAAACCCACCAGCGAAGAATCCTTGA
TCCTGGAAATCATCGAACGTTGTTGCTACTTCCTGGCCTACCCGAGCTTG
TTCATTCAGCACCAGTCATTGGCCGTTCTTCGGGAGACCCTCTCAAGACT
ATCCTCGCGCCGCCTCGTTCTTCTACCGACCGTGCACCGCGTCTGGCCGG
CCGTGATGGCACGGCTGCGGGCGTGTGCGTCCTCCATTGGGGGCCCGAGA
AGTCGACGCCCGGGCCAGGACGAGAAGGATATGGACCTGTCTGCCGCGTA
CCTGTTGGTCGTTGAAGGGCTCGATATGGTCGCGGGGCTGGCAGGGTTGT
GCGGTGACTACCTTTCTTTCAAGTTCACGGAAGAGCTCTGGCCGGTGTTG
AAGATACTCCTGTTGGCATCGGCGAAGTCTTTCCATGAACGACGGGCAGG
AGGACCACGGGCGATAAGGGTGTCTAGAATGGCTGGGGATGCATCGACCG
CTTCGAGTTCTCATGTGCCCGCCTTGGGCCAAAAAGGCCTCGTGCTACCC
AAGCAATGCCCGGATCAGACGGCTCTCGCAGAAACGGACAACGATAGGAG
AGGACAGCTGGGCGGGGAGCCTCTGTGGGATGGCCTCAATCTTCACCAGG
GATACAGAGAGCGAGAGAGGCAAACATTGCAACATCGGGCAGAGGCAGCC
CTGGTGCACTGCTTGCATTCTTTCGTTGCGAGTGAAGACGCCTTCCGCTA
TTGCGTTCCTCTCGTCCACGAAATTGGTCAGAGTTGTCTGTTCTTGCTCG
GGTGTGCTCCGAACAGTCCAAGCGCAGGGGACGCTCTTATCCTCTTTCGT
GCCTTGGCGAGTCTAGACGGGGCCGCCTTATGGCCTTTGCTGATGGCCGC
TGCGGGATGGGACGTTAGCTTTCGCCCTCCTAGGCAGGGGATTGGAGTGG
GCGAGGGGAGGGGGGATGACGGAGAGGGGGACGGGTTGAGGGTTCGGAAG
GACAAGGCGGGGGAGAAGTTCGCGCGCTACCACGCCGACATATTGCTAAA
ATACGTCGAAAGTGGGGAGATTGAAGAGATGGCATGGTGTGTCTCATAG

Synonyms

Publications