rna4441, rna4441 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4441
Unique Name	rna4441
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1975
Alignment location	CM002463.1:595556..597845 +

Link to JBrowse

Properties


Property Name	Value
Product	Heat shock protein Hsp33
Orig transcript id	gnl\|cribi\|Naga_100025g51.7534.mrna
Orig protein id	gnl\|cribi\|Naga_100025g51.7534
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:595556..597845 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g51	gene4285	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4441	rna4441-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26243.1	cds4430	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:595556..597845+
coding sequence from alignment at CM002463.1:595556..597845+

mRNA sequence

>rna4441 ID=rna4441|Name=rna4441|organism=Nannochloropsis gaditana|type=mRNA|length=1975bp
GGGGGTAGGAGGTTAATTTTTCATGGAGTTTACGTTCACTCATGATGCAG
AGGCCTTCGCGACTCCCGCAGACAAGATGCAAGCTCGTGAATTTCTGGAG
CTCCCTTCATATGCAGCTGCCTTCTATTCTTCAAACCATCCTCCTTTTCC
TCCTACTTCTCCTGTTGCTCAACCTTCCAGCCTCCTCACCTCAGCAAACG
GCAAGCACAACGACGATTTATCTTCGTCGACTTCTTCATTTCCCAATACC
ACTCCCTTTCCTGCTAGAATTGATCAATCTTCTCATGATGCAAGCGGTGT
CACCCATGACATTGCAAGAGAAGAAGTGATTGGCCGAATCGAGGAGTTCA
TTTGCGCCTGGATAGCGACACTCAGCGACAACGACATATCTGAGCCCCCC
ACTTTTGAGGTCCGTCGACGCACAAAGGCAAATTCAATTTACTATCCAGG
GGAGAGAAAAAATGGAGAGTCATGTCAACAACTTCCCGGACTGAAACAAG
GGGATGGAGTGGTGATCAAGAAGCTTTCCGAAGGTGGAAGAGGTTCTGCT
CGTTCATACGCCGCAATATTTGCCATTTTGGCATTTTCTCATCGGATTTT
GCTGTCAAATCAAATGGCTACCAGTCGAGAAGTGTGGTACAACTACAAGG
CATCGCATTCATGCTTCAAGTGTCAGGCAGATTGTGATAGAGCAGTCTTG
GATGCTGCTTCACTGCTGGGTGTGGCAAGGCACCAGTTGGGAATTGTAGG
TGCAGCTAAAGGTCTAATGGCCGGGCATTTTCGATTCCGTGTTTGGGGAA
GTGGGAGAGCATGGAACGAGTGTGATGGGGGTGGTGGAGACGGGGAAGGG
GGCCTCGGCTGTGGCGGTACACTGATCGACAGTTGTTGGATCACGGATGT
GATGGAGGTGGAGTGCCTCGGTAAACATCGTCCCCGCTATATTGTGGTCG
TTGAGAAGGAGTGTATGTTCAAGCGGCTAATTGGTGATGGCTTGCTAGGA
CAGGCGGGAGGCATTGTTCTTATCACTGGAAAAGGCTACCCAGATTTGGC
GACGCGGGCGTGCGTAAAGGCGCTAGTCGACGCATTTGCCGTGCCGGTGG
TGGGACTTTGCGATTGCAATCCTCACGGCATTGCTCTCCTTCTGACATAC
AAATGTGGATCTTTCCGTATGCCTGAGTCGCAAGCCTACCGTATTCCCTT
ATGCTGGCTAGGCCTGCGTCCCTCGCAGCTTAAGCGACGCTTTGACCTTC
CCGACGACACCTTTCAGGCCTTTTCCGAAGGTGATATCAGTAAGTGCAGC
TCATTGATGGACTCACCGTTCTGTCAAGCGCATTTACCATGGAGAGAGGA
GGTAGAAACGATGGCTTCCGAGCACCTGAAATGTGAACTAGAGGCATTGA
ACACTTTCTCAGGAAGCAAGGGTCGACGGGATTTTTTGAGCCAGTACGTT
GTCTCGGCCTTGCTCTCTGGTGATTATCTGACGTAGTAAGTGTCCTGAAA
TAGGCTTGCAATTATACAGTGCGGGAATTCTTAATACGCAAAGTTCCATC
CGACTGAGCTGAATTTACCAACGTTACCCAAAAAAGTAGAGCGTAGGTGA
AGGTGCGATGACAAAAATCGACATTCAGCGTGTTCATGTCAAGACCCCTT
CCATGTCTTTTCCAGCGTGAGACATGTCTCGCTTCAAAGCTCACACATAA
GTCCCCCAATGAATAAGTGTCTTACTTGATCAAGATATCTTGTATCGTTG
GGAGGTGACAGTATGGCTCCAAAATGAGTTTCGTCAAAAGAAGCATTCTG
GTGGCGGGGGAAAAATGGGCCGCGGGCCCAAGCTTCATGAGATTGCTCAC
GTGACCGTGAGTCTACCCCCCTTTATTACGGCCATCCCACCTCTTTAAAT
ATAATCGAGTGCTTTTACTCTATCACCACAAATTTGACACATCATTTGTA
ATCGGCACGCGCACCTCTTGCCACC

protein sequence of rna4441

>rna4441-protein ID=rna4441-protein|Name=rna4441|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MDRSKIKILPTPHILRCLPLLCSFLPFLSMASAFIPLTSRLRNSPLVRVC
RRTMHPPTFSMREGMSFNSPPYTRNNNRPTSRGPSFRLFKTSAPLHANAG
GTNNDDFVPISPATLNWEKIGPDQDVFISALSQNGHVNVKVISAKNMVQA
IREKRELSAVSTELLGRVMLSAMLVANGIKDEETLQLTFSGDGAAKGVMA
ISDGACNVRAWIGNSDLDDLKDPETGRADIKAAVGKGTLQVVKNHPSWRI
PYNGVVQIASGEVAPDVAFYLASSEQRNTALGVGLSLDPKTGEVESAGGF
YIEMMPGVEEESVLKVEVNLAVLKERFGSVDPGVLFAGKQPVTPYKLVKM
LLDGLGVGMAEETQPAYRCTCSAEKVFRAVSLLGEEEVESILAQEGMIAA
KCEFCAEKYELSREQLVALREEALAAAEAGEPWPAR

mRNA from alignment at CM002463.1:595556..597845+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4441 ID=rna4441|Name=rna4441|organism=Nannochloropsis gaditana|type=mRNA|length=2290bp|location=Sequence derived from alignment at CM002463.1:595556..597845+ (Nannochloropsis gaditana)
ATCACAGATATGGACAGAAGCAAGATCAAGATACTTCCTACGCCTCATAT
TCTGCGTTGCTTGCCTCTACTGTGTTCATTTTTGCCGTTTTTATCTATGG
CGTCGGCATTCATTCCCTTGACCTCCCGGCTACGAAACTCTCCACTTGTG
AGAGTTTGCCGACGTACCATGCACCCACCGACTTTTAGCATGCGCGAAGG
GATGAGTTTTAATAGCCCACCATACACCCGCAATAATAATCGACCAACGT
CTCGCGGACCGTCGTTTCGGCTTTTCAAAACCAGTGCGCCACTGCACGCC
AACGCAGGGGGCACGAATAACGACGACTTTGTGCCAATCTCCCCAGCAAC
TTTGAATTGGGAGAAAATTGGGCCGGATCAGGATGTCTTCATAAGTGCTT
TGTCTCAAAATGGCCATGTGAATGTCAAGGTCATCTCCGCGAAAAACATG
GTGCAAGCCATccgggagaagagagagctCTCCGCAGTCTCTACGGAACT
CCTCGGGCGTGTCATGCTTAGTGCCATGCTTGTCGCCAACGGCATCAAGG
ACGAAGAAACTTTACAACTTACATTCAGCGGGGACGGTGCGGCGAAAGGT
GTGATGGCTATATCCGATGGAGCTTGCAACGTGCGTGCCTGGATAGGCAA
CAGCGATCTCGACGACCTGAAGGACccggagacggggagggcagacATCA
AGGCCGCCGTGGGGAAAGGAACGCTACAAGTCGTCAAAAACCATCCCTCC
TGGCGCATTCCATACAACGGCGTGGTGCAGATTGCCTCGGGGGAGGTAGC
GCCCGACGTCGCCTTCTATCTGGCCTCCTCGGAGCAGCGGAATACGGCTC
TGGGCGTGGGCTTGTCCTTGGACCCAAAAACGGGAGAAGTGGAGTCAGCG
GGAGGTTTTTACATCGAAATGATGCctggtgtggaggaggagagcgtgtt
gaaggtggaggtgaatTTGGCGGTGCTGAAAGAACGCTTTGGGAGTGTGG
ATCCGGGGGTCTTGTTCGCGGGGAAGCAGCCGGTCACCCCCTACAAGCTG
GTCAAGATGCTCCTGGACGGTAGGTGGAACGACAATGAGGGGGTCGGATA
GCTTTATGTCGTCGCAAGTAGGCAACCTGTCAGAAGAGGGGCTGTGGGGG
CCATGGAGGCGACCAGGCACCCGCCACAATGGCCCGGGCTCACGACCGGG
CCCCGCCTATATGACCCATATTCCCACCCCCAACCCTTTTTCTCCGAACA
CGCCTGACAGGTTTGGGCGTGGGGATGGCGGAAGAGACCCAGCCCGCCTA
CCGTTGCACGTGCTCAGCCGAGAAGGTGTTTCGAGCTGTTAGCCttctgg
gagaggaggaggttgagagcATTCTGGCCCAGGAGGGGATGATCGCGGCC
AAGTGCGAGTTCTGCGCCGAGAAGTACGAGCTCTCGCGGGAGCAGCTTGT
AGCCTTGAGAGAAGAGGCGttggcggccgcggaggcaGGCGAGCCGTGGC
CGGCGCGTTGAGGGTGGGGTCCAGGGAAGCAGAAAACGTTGAAAATTCTG
GTCAAATACAGGATTGGAATAAAACGCATGTGAAGAAACCATGGTGTGTG
GGGCGCAGCGAAACGTTGCGTGGTATTTGTTCGCTTCCATTTGCACATTT
TCAACCTCGACCACGCACCCTCCAGGCCCGTACGTTCCATCTCTCCCCCG
CGCTTCTTTACCCCTCTTTTTACACGCAACTTTCAAGGCTCTTTCGCATA
CATATACCTTCAAGTCAAGGCAGCTCGTATCGCTATGCCTGGCAACTAGC
GACAGCTGCTCACTCCCACACAAATTGAGGCGAAAGACATAGTCCTCCCG
GCGTGGgcactcccccctcccctcgaaTCGGCGAGTTGGTCAAGAAAATA
CCTTTGGCAATGTCAGTCATGAATTTAACAACATGTGCACATCGCACCTT
TCAACTCTCGGCTCGCGACGGAGCGATTTGAAGGCCTTAAGGCCTTCACT
GCTACCCAGACACTATTCAACACCCTCATGCACCCGTTTCATCTCTGCAT
CTCAAGCATgctgcacctcctccctgttcaCAGCCTCACGCCTCCTGTCA
TCAGCCTCGCCTTCCAGCAACTCAAgcctctcccttgcctcGAAGTCCAC
TTTACTCAGATACTGGAGCCGGTTCGTCAGCGATACCATACGCGACCAAT
CCTGAGAGGGCGATGAATGGAAAATGGTCAGAAAGTCGCACCACGGgaac
aaaaagaagaagcccCCAACCGGCTTGCCATCAATTGACC

Coding sequence (CDS) from alignment at CM002463.1:595556..597845+

>rna4441 ID=rna4441|Name=rna4441|organism=Nannochloropsis gaditana|type=CDS|length=2622bp|location=Sequence derived from alignment at CM002463.1:595556..597845+ (Nannochloropsis gaditana)
ATGGACAGAAGCAAGATCAAGATACTTCCTACGCCTCATATTCTGCGTTG
CTTGCCTCTACTGTGTTCATTTTTGCCGTTTTTATCTATGGCGTCGGCAT
TCATTCCCTTGACCTCCCGGCTACGAAACTCTCCACTTGTGAGAGTTTGC
CGACGTACCATGCACCCACCGACTTTTAGCATGCGCGAAGGGATGAGTTT
TAATAGCCCACCATACACCCGCAATAATAATCGACCAACGTCTCGCGGAC
CGTCGTTTCGGCTTTTCAAAACCAGTGCGCCACTGCACGCCAACGCAGGG
GGCACGAATAACGACGACTTTGTGCCAATCTCCCCAGCAACTTTGAATTG
GGAGAAAATTGGGCCGGATCAGGATGTCTTCATAAGTGCTTTGTCTCAAA
ATGGCCATGTGAATGTCAAGGTCATCTCCGCGAAAAACATGGTGCAAGCC
ATccgggagaagagagagctCTCCGCAGTCTCTACGGAACTCCTCGGGCG
TGTCATGCTTAGTGCCATGCTTGTCGCCAACGGCATCAAGGACGAAGAAA
CTTTACAACTTACATTCAGCGGGGACGGTGCGGCGAAAGGTGTGATGGCT
ATATCCGATGGAGCTTGCAACGTGCGTGCCTGGATAGGCAACAGCGATCT
CGACGACCTGAAGGACccggagacggggagggcagacATCAAGGCCGCCG
TGGGGAAAGGAACGCTACAAGTCGTCAAAAACCATCCCTCCTGGCGCATT
CCATACAACGGCGTGGTGCAGATTGCCTCGGGGGAGGTAGCGCCCGACGT
CGCCTTCTATCTGGCCTCCTCGGAGCAGCGGAATACGGCTCTGGGCGTGG
GCTTGTCCTTGGACCCAAAAACGGGAGAAGTGGAGTCAGCGGGAGGTTTT
TACATCGAAATGATGCctggtgtggaggaggagagcgtgttgaaggtgga
ggtgaatTTGGCGGTGCTGAAAGAACGCTTTGGGAGTGTGGATCCGGGGG
TCTTGTTCGCGGGGAAGCAGCCGGTCACCCCCTACAAGCTGGTCAAGATG
CTCCTGGACGGTTTGGGCGTGGGGATGGCGGAAGAGACCCAGCCCGCCTA
CCGTTGCACGTGCTCAGCCGAGAAGGTGTTTCGAGCTGTTAGCCttctgg
gagaggaggaggttgagagcATTCTGGCCCAGGAGGGGATGATCGCGGCC
AAGTGCGAGTTCTGCGCCGAGAAGTACGAGCTCTCGCGGGAGCAGCTTGT
AGCCTTGAGAGAAGAGGCGttggcggccgcggaggcaGGCGAGCCGTGGC
CGGCGCGTTGAATGGACAGAAGCAAGATCAAGATACTTCCTACGCCTCAT
ATTCTGCGTTGCTTGCCTCTACTGTGTTCATTTTTGCCGTTTTTATCTAT
GGCGTCGGCATTCATTCCCTTGACCTCCCGGCTACGAAACTCTCCACTTG
TGAGAGTTTGCCGACGTACCATGCACCCACCGACTTTTAGCATGCGCGAA
GGGATGAGTTTTAATAGCCCACCATACACCCGCAATAATAATCGACCAAC
GTCTCGCGGACCGTCGTTTCGGCTTTTCAAAACCAGTGCGCCACTGCACG
CCAACGCAGGGGGCACGAATAACGACGACTTTGTGCCAATCTCCCCAGCA
ACTTTGAATTGGGAGAAAATTGGGCCGGATCAGGATGTCTTCATAAGTGC
TTTGTCTCAAAATGGCCATGTGAATGTCAAGGTCATCTCCGCGAAAAACA
TGGTGCAAGCCATccgggagaagagagagctCTCCGCAGTCTCTACGGAA
CTCCTCGGGCGTGTCATGCTTAGTGCCATGCTTGTCGCCAACGGCATCAA
GGACGAAGAAACTTTACAACTTACATTCAGCGGGGACGGTGCGGCGAAAG
GTGTGATGGCTATATCCGATGGAGCTTGCAACGTGCGTGCCTGGATAGGC
AACAGCGATCTCGACGACCTGAAGGACccggagacggggagggcagacAT
CAAGGCCGCCGTGGGGAAAGGAACGCTACAAGTCGTCAAAAACCATCCCT
CCTGGCGCATTCCATACAACGGCGTGGTGCAGATTGCCTCGGGGGAGGTA
GCGCCCGACGTCGCCTTCTATCTGGCCTCCTCGGAGCAGCGGAATACGGC
TCTGGGCGTGGGCTTGTCCTTGGACCCAAAAACGGGAGAAGTGGAGTCAG
CGGGAGGTTTTTACATCGAAATGATGCctggtgtggaggaggagagcgtg
ttgaaggtggaggtgaatTTGGCGGTGCTGAAAGAACGCTTTGGGAGTGT
GGATCCGGGGGTCTTGTTCGCGGGGAAGCAGCCGGTCACCCCCTACAAGC
TGGTCAAGATGCTCCTGGACGGTTTGGGCGTGGGGATGGCGGAAGAGACC
CAGCCCGCCTACCGTTGCACGTGCTCAGCCGAGAAGGTGTTTCGAGCTGT
TAGCCttctgggagaggaggaggttgagagcATTCTGGCCCAGGAGGGGA
TGATCGCGGCCAAGTGCGAGTTCTGCGCCGAGAAGTACGAGCTCTCGCGG
GAGCAGCTTGTAGCCTTGAGAGAAGAGGCGttggcggccgcggaggcaGG
CGAGCCGTGGCCGGCGCGTTGA

Synonyms

Publications