rna4439, rna4439 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4439
Unique Name	rna4439
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	885
Alignment location	CM002463.1:590370..593147 -

Link to JBrowse

Properties


Property Name	Value
Product	conserved unknown protein
Orig transcript id	gnl\|cribi\|Naga_100025g53.7541.mrna
Orig protein id	gnl\|cribi\|Naga_100025g53.7541
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:590370..593147 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g53	gene4283	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26250.1	cds4428	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4439	rna4439-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:590370..593147-
coding sequence from alignment at CM002463.1:590370..593147-

mRNA sequence

>rna4439 ID=rna4439|Name=rna4439|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
ATGGTCTACAAATGTTTGCAGCGGCTGCTCTTGTTTTTCTTCCTGTCATT
ATCGCATGCGCAAGAACATCGGGGCGTTACTGAGATAAACGGGACGCTTG
TCAAATGTCATACTACGGCAGCGAACGGTGCGGCATTCATCTTTGAAATC
AAATCTGAATGGGCTCCTTTTGGAGCAGAACGTTTTTTGCAGCTGGTAGC
ATCTGGGTACTTCACAGATGTGCCTTTTTTCCGCGTGGTACCAGGATTCT
TGACACAATTCGGCATCCCTCCGCCATCGGCCGTGCGGAAACGCTGGCGT
GAGGAAGGCTCAATACCCGATGATCCTTCTCAAAATCGACAGATCCTTCG
GGGCTACTTAAGTTTTGCTGGCGCGGGTCCAAACACACGGGACACACAGC
TATTCATCGCCTTAGCTGACAGTTCATGGTTAGGGAAGTCTCCATGGGAG
GTGCCCGTAGGTCGAGTCATAGAGGGAATGGATGTGATCGATGCTTTGTA
TGCCGGTTACGGTGAGATTTCACCGTTCAATAAAGAAGGAGTGGAACAAT
ACAAAATATGGGCAGATGAAGATTATTTGCGGAGAGATTTCCCGAAATTA
GACTACATGAAAGACTGTGCTATCATCCCAGCTTCTGCCAAGAAAGCCTC
AATTCAGGAGGATCGAGGCCGGCGTGAAGAAACCAAGAGAGTAGTTGTCG
GTGAAGAGCGAGTCCCCGAGGAAACCCTGAATGCGTTGTCCAACGCGAGA
GATAAAGAGCCTGCGTGGACTGAAGAGTGGCCTTACACCTGGTGGGGCCT
CCTCTGGGTTCTCGGAGGACTGTTCGGATTTTTGACCATGATGTGGAAGT
TAAATAACGTTAAGAGCCTGGGTAAAGCAAGATGA

protein sequence of rna4439

>rna4439-protein ID=rna4439-protein|Name=rna4439|organism=Nannochloropsis gaditana|type=polypeptide|length=542bp
MSWGRSPPQNFGALGRSPFKSSSPRPLGPGEGSGHGPAGGSSSREDARGE
GGSAHGTDWTLLDQRGTRGPASCSPSSSSASREFLSMAEHRRRSMSLDIP
RGQHHSSSQAPKTSQQLLQPQHSNYHGHHRSSTITHSSSPGNILSLARDF
SGLSAGMRGTPPPAPGHPMHTDRSSSGVGSSLGMMEGSGSGSGSTGGSVG
GSGSGVARSGAASSSPSTSVASTSETATVTGVAGTSTSESHLQRQFRARL
DEAEQQAAYWQARAKEAEHASGKSQRDCISLRSQLSAQQGTAVSRGEVLA
SMYARVERIMVGLGMDVAALPAVASKEAIGGCASTGAGGKEGGTGGGRRA
QTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSN
PSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWI
GRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPG
TRYAVVSVEPIKGLSESVSLGSAGSSSDTKANRAGVSSREKS

mRNA from alignment at CM002463.1:590370..593147-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4439 ID=rna4439|Name=rna4439|organism=Nannochloropsis gaditana|type=mRNA|length=2778bp|location=Sequence derived from alignment at CM002463.1:590370..593147- (Nannochloropsis gaditana)
GTGTCATCCTCGCAAGAACGCTCTGGTGCATTCCATCGGTCAACAAGAGT
GCTTTGAACCGTAGAAATGCCGACACATGATTTTTAAAAAGTCTTTCCTT
GTCAACCTCGTTACTTTTCGAATGCAGAAAGTCGAAGAACAGTGAAGCCA
GCGCAAACGTGACATTTTCGAAGGCAACTTGGGTTTTCCACGCGAGGCTT
GATCATGAGTTGGGGACGATCGCCACCACAGAACTTTGGTGCGCTGGGTC
GCTCACCGTTTAAGAGCTCATCTCCCCGACCATTGGGGCCAGGTGAAGGC
AGCGGCCACGGGCCTGCAGGCGGTAGCAGCAGCAGGGAGGATGCCCGCGG
TGAAGGTGGGAGTGCACACGGCACGGACTGGACCCTGTTGGACCAGCGCG
GCACAAGGGGCCCTGCATCGTGCTCTCCGTCGTCGTCCTCGGCGTCCAGA
GAATTTCTCTCCATGGCGGAGCACCGGCGGCGGTCGATGAGCCTGGACAT
CCCCCGCGGCCAACACCACAGCAGCAGTCAGGCACCCAAGACGTCTCAGC
AGCTGCTTCAACCTCAGCACAGCAATTACCACGGACATCACCGCTCGTCA
ACTATCACACACAGTAGCAGTCCTGGTAACATCCTGTCCTTGGCGCGGGA
TTTCTCGGGGTTGAGTGCTGGAATGAGAGGCACGCCCCCGCCGGCGCCCG
GCCACCCGATGCACACGGACCGGAGCAGCAGTGGGGTCGGCAGCAGCTTG
GGAATGATGGAGGGCAGTGGGAGTGGGAGTGGAAGCACTGGTGGGAGTGT
CGGAGGGAGCGGGAGTGGGGTGGCGCGCAGCGGTGCGGCCTCTTCCTCCC
CCTCGACCTCCGTCGCCTCCACCTCGGAGACGGCGACCGTGACAGGTGTC
GCGGGGACGAGCACATCCGAGTCGCATTTGCAGCGGCAATTTCGTGCCCG
TTTGGATGAAGCAGAGCAGCAGGCGGCCTACTGGCAGGCGCGGGCCAAGG
AAGCGGAGCACGCGAGCGGGAAGAGCCAGAGGGATTGCATCTCTTTGCGC
TCCCAATTGAGCGCTCAACAGGGCACGGCCGTCTCGCGGGGCGAGGTGCT
TGCCTCCATGTACGCAAGGGTGGAACGGATTATGGTCGGGCTCGGGATGG
ACGTCGCGGCCCTCCCTGCCGTGGCAAGCAAGGAGGCGATCGGTGGGTGT
GCTTCCACAGGGGCGGGGGGGAAGGAGGGCGGGACCGGAGGGGGAAGGAG
GGCCCAGACATCTGTGTTGGAGAGCATCGAGCTCGGCTTGATGGCGCTGG
AGAAGCAGTTGCTGCCGCTGGGCAAAAGGACCCAAAAAACCGGAGACCTC
GGCGGCAGGGATGCTGCTCCGGTTTTGCCTCCTCCCTCCCCGTCGCCGTC
CAACCCCTCCTCCCCACCTTCCTTCGTCATCCATTTCCAGCGCTTCGCCC
TCGGGCACGTGGCCCTATTTTTCCCCACCCCGGCGGGCGACTACCTGGCT
TTCAACGTGGGCTGCCCGCACTACTACCTTTCGGAGGACGCCAAGGCTTG
GATAGGGAGGGACCGGCATTTTCGGAAGTACTACGTGCTGGGCAGGATCA
CCAGGCTGGTCAAGTGTCAGGTCCCCACCGTGGAGGAGGAAGAGGGCAGG
GTGGGAGAAGGGGAGGGCGAGGCAAAGGCGACTCCCTTCAGCCTGGCTCC
AGGGACCAGGTACGCCGTGGTTTCGGTGGAGCCCATCAAGGGACTGAGCG
AGTCTGTGAGCCTCGGCAGTGCCGGCAGCAGCAGCGACACGAAAGCGAAC
AGAGCCGGCGTGTCGTCCAGAGAAAAATCGTGAGATAAGGGACCAAAGTA
CGCCACGCATGGTCGCGCCCAGAGTAGGACCCGACACGCTTTGTATGAAA
TTTTGGAGGCTTCCTCGGTCATCGTAGAGTAACACCTCGGAAAGCCACCT
TGTTGCATTTGTAGATTTCATCGAAAAAAACAGGAATGTAGGATATTGAA
ACCGGTTCTTCAGCGGTGTATATGAATAGAACATGAACTTGTGTACGAGT
GCATGCATAAGCGAGGGGAATTCTTCATAGTCCTTGTGCAGAAAGATGCA
CGTTACAGAGACGAAGACCCAAGAAGGGCTCAAAATTACCCTTTTCGGGC
AACCAGCACCCGAGCGATGCTTTCTCCTTACCAGTGGTAAGGGCAACTGT
TGCGCGACACGAGGAGCGTCATTCGTGTATCACGTTCACACGGCAAACGC
AAAATGTACTCATATTGAAGGGAGGGAGGTTGTCACGTGACGGCAGCTGT
CCATCCTGAAGGTAAATTAACTGGCTCTTATTATCTCGGACATGTTCACA
AAGGAGGTTGTAGCATAGATGTGAATATACAGGTGTTATGTTCTGGTTTC
CTGCGTCGTCTTTTTATTCAGTACGCCTTAACCATCACAATTGAGCCCTG
CTGAACGGCCATGGTCGGGAAAAGTAGCACAAGGACGCCAAGTTTTTGGC
CGAATATGCGTCGCGGGCTGCCTTGCTCGTCATCGGTCACGAATGACGCT
AGACTGGGCATATACGGGCTCAAAAATGCAGAGTGTGCGGACGGCGTGTT
TGGCATTCGTGTTCATGTTCATTCTGGAAACCACATCAGTTACAGCACAT
TTAAAAAATAACGCACTGAATGTGTACAAAGAGAAAAGCCAACGGTAGGC
ACGAAGTATTTTCATCTTGCTTTACCCAGGCTCTTAACGTTATTTAACTT
CCACATCATGGTCAAAAATCCGAACAGT

Coding sequence (CDS) from alignment at CM002463.1:590370..593147-

>rna4439 ID=rna4439|Name=rna4439|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at CM002463.1:590370..593147- (Nannochloropsis gaditana)
ATGAGTTGGGGACGATCGCCACCACAGAACTTTGGTGCGCTGGGTCGCTC
ACCGTTTAAGAGCTCATCTCCCCGACCATTGGGGCCAGGTGAAGGCAGCG
GCCACGGGCCTGCAGGCGGTAGCAGCAGCAGGGAGGATGCCCGCGGTGAA
GGTGGGAGTGCACACGGCACGGACTGGACCCTGTTGGACCAGCGCGGCAC
AAGGGGCCCTGCATCGTGCTCTCCGTCGTCGTCCTCGGCGTCCAGAGAAT
TTCTCTCCATGGCGGAGCACCGGCGGCGGTCGATGAGCCTGGACATCCCC
CGCGGCCAACACCACAGCAGCAGTCAGGCACCCAAGACGTCTCAGCAGCT
GCTTCAACCTCAGCACAGCAATTACCACGGACATCACCGCTCGTCAACTA
TCACACACAGTAGCAGTCCTGGTAACATCCTGTCCTTGGCGCGGGATTTC
TCGGGGTTGAGTGCTGGAATGAGAGGCACGCCCCCGCCGGCGCCCGGCCA
CCCGATGCACACGGACCGGAGCAGCAGTGGGGTCGGCAGCAGCTTGGGAA
TGATGGAGGGCAGTGGGAGTGGGAGTGGAAGCACTGGTGGGAGTGTCGGA
GGGAGCGGGAGTGGGGTGGCGCGCAGCGGTGCGGCCTCTTCCTCCCCCTC
GACCTCCGTCGCCTCCACCTCGGAGACGGCGACCGTGACAGGTGTCGCGG
GGACGAGCACATCCGAGTCGCATTTGCAGCGGCAATTTCGTGCCCGTTTG
GATGAAGCAGAGCAGCAGGCGGCCTACTGGCAGGCGCGGGCCAAGGAAGC
GGAGCACGCGAGCGGGAAGAGCCAGAGGGATTGCATCTCTTTGCGCTCCC
AATTGAGCGCTCAACAGGGCACGGCCGTCTCGCGGGGCGAGGTGCTTGCC
TCCATGTACGCAAGGGTGGAACGGATTATGGTCGGGCTCGGGATGGACGT
CGCGGCCCTCCCTGCCGTGGCAAGCAAGGAGGCGATCGGTGGGTGTGCTT
CCACAGGGGCGGGGGGGAAGGAGGGCGGGACCGGAGGGGGAAGGAGGGCC
CAGACATCTGTGTTGGAGAGCATCGAGCTCGGCTTGATGGCGCTGGAGAA
GCAGTTGCTGCCGCTGGGCAAAAGGACCCAAAAAACCGGAGACCTCGGCG
GCAGGGATGCTGCTCCGGTTTTGCCTCCTCCCTCCCCGTCGCCGTCCAAC
CCCTCCTCCCCACCTTCCTTCGTCATCCATTTCCAGCGCTTCGCCCTCGG
GCACGTGGCCCTATTTTTCCCCACCCCGGCGGGCGACTACCTGGCTTTCA
ACGTGGGCTGCCCGCACTACTACCTTTCGGAGGACGCCAAGGCTTGGATA
GGGAGGGACCGGCATTTTCGGAAGTACTACGTGCTGGGCAGGATCACCAG
GCTGGTCAAGTGTCAGGTCCCCACCGTGGAGGAGGAAGAGGGCAGGGTGG
GAGAAGGGGAGGGCGAGGCAAAGGCGACTCCCTTCAGCCTGGCTCCAGGG
ACCAGGTACGCCGTGGTTTCGGTGGAGCCCATCAAGGGACTGAGCGAGTC
TGTGAGCCTCGGCAGTGCCGGCAGCAGCAGCGACACGAAAGCGAACAGAG
CCGGCGTGTCGTCCAGAGAAAAATCGTGA

Synonyms

Publications