EWM26250.1, cds4428 (CDS) Nannochloropsis gaditana

Overview
NameEWM26250.1
Unique Namecds4428
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:591315..592943 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26250.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100025g53.7541.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:591315..592943 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR019460Autophagy-rel_p11
Homology
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|585108249|gb|EWM26250.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 1078.54 bits (2788), Expect = 0.000e+0
Identity = 542/542 (100.00%), Postives = 542/542 (100.00%), Query Frame = 0 
Query:    1 MSWGRSPPQNFGALGRSPFKSSSPRPLGPGEGSGHGPAGGSSSREDARGEGGSAHGTDWTLLDQRGTRGPASCSPSSSSASREFLSMAEHRRRSMSLDIPRGQHHSSSQAPKTSQQLLQPQHSNYHGHHRSSTITHSSSPGNILSLARDFSGLSAGMRGTPPPAPGHPMHTDRSSSGVGSSLGMMEGSGSGSGSTGGSVGGSGSGVARSGAASSSPSTSVASTSETATVTGVAGTSTSESHLQRQFRARLDEAEQQAAYWQARAKEAEHASGKSQRDCISLRSQLSAQQGTAVSRGEVLASMYARVERIMVGLGMDVAALPAVASKEAIGGCASTGAGGKEGGTGGGRRAQTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESVSLGSAGSSSDTKANRAGVSSREKS 542
            MSWGRSPPQNFGALGRSPFKSSSPRPLGPGEGSGHGPAGGSSSREDARGEGGSAHGTDWTLLDQRGTRGPASCSPSSSSASREFLSMAEHRRRSMSLDIPRGQHHSSSQAPKTSQQLLQPQHSNYHGHHRSSTITHSSSPGNILSLARDFSGLSAGMRGTPPPAPGHPMHTDRSSSGVGSSLGMMEGSGSGSGSTGGSVGGSGSGVARSGAASSSPSTSVASTSETATVTGVAGTSTSESHLQRQFRARLDEAEQQAAYWQARAKEAEHASGKSQRDCISLRSQLSAQQGTAVSRGEVLASMYARVERIMVGLGMDVAALPAVASKEAIGGCASTGAGGKEGGTGGGRRAQTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESVSLGSAGSSSDTKANRAGVSSREKS
Sbjct:    1 MSWGRSPPQNFGALGRSPFKSSSPRPLGPGEGSGHGPAGGSSSREDARGEGGSAHGTDWTLLDQRGTRGPASCSPSSSSASREFLSMAEHRRRSMSLDIPRGQHHSSSQAPKTSQQLLQPQHSNYHGHHRSSTITHSSSPGNILSLARDFSGLSAGMRGTPPPAPGHPMHTDRSSSGVGSSLGMMEGSGSGSGSTGGSVGGSGSGVARSGAASSSPSTSVASTSETATVTGVAGTSTSESHLQRQFRARLDEAEQQAAYWQARAKEAEHASGKSQRDCISLRSQLSAQQGTAVSRGEVLASMYARVERIMVGLGMDVAALPAVASKEAIGGCASTGAGGKEGGTGGGRRAQTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESVSLGSAGSSSDTKANRAGVSSREKS 542
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|553194962|ref|XP_005856063.1| (protein kinase, partial [Nannochloropsis gaditana CCMP526] >gi|422292996|gb|EKU20297.1| protein kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 265.003 bits (676), Expect = 1.089e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:  339 GKEGGTGGGRRAQTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLG 463
            GKEGGTGGGRRAQTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLG
Sbjct:    1 GKEGGTGGGRRAQTSVLESIELGLMALEKQLLPLGKRTQKTGDLGGRDAAPVLPPPSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLG 125
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|299470640|emb|CBN78581.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.375 bits (259), Expect = 6.082e-20
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPI 511
            I F RF++G VA+FFPTP G++LAFNVGCP ++LS++++  +GRD HFR YYVLGRI   ++ +  T EEE              P+SL  G    VVSVE I
Sbjct:  524 IAFTRFSVGQVAMFFPTPEGNFLAFNVGCPRHFLSKESQDLVGRDEHFRSYYVLGRI---IEIRDQTCEEE-------------NPYSLPVGQSIMVVSVESI 610
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|568056269|gb|ETM52981.1| (ULK/ULK protein kinase [Phytophthora parasitica] >gi|570334207|gb|ETO82155.1| hypothetical protein F444_03695 [Phytophthora parasitica P1976])

HSP 1 Score: 82.0333 bits (201), Expect = 8.944e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  449 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 553
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|566030520|gb|ETI53431.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567968129|gb|ETK93279.1| ULK/ULK protein kinase, variant 1 [Phytophthora parasitica] >gi|567996579|gb|ETL46686.1| ULK/ULK protein kinase, variant 1 [Phytophthora parasitica] >gi|570958247|gb|ETP23226.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570994016|gb|ETP51230.1| hypothetical protein F442_03606 [Phytophthora parasitica P10297])

HSP 1 Score: 82.0333 bits (201), Expect = 9.345e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  449 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 553
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|568056281|gb|ETM52993.1| (ULK/ULK protein kinase, variant 12 [Phytophthora parasitica] >gi|568056282|gb|ETM52994.1| ULK/ULK protein kinase, variant 13 [Phytophthora parasitica] >gi|568056283|gb|ETM52995.1| ULK/ULK protein kinase, variant 14 [Phytophthora parasitica] >gi|570334219|gb|ETO82167.1| hypothetical protein, variant 12 [Phytophthora parasitica P1976] >gi|570334220|gb|ETO82168.1| hypothetical protein, variant 13 [Phytophthora parasitica P1976] >gi|570334221|gb|ETO82169.1| hypothetical protein, variant 14 [Phytophthora parasitica P1976])

HSP 1 Score: 81.6481 bits (200), Expect = 9.451e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  272 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 376
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|568056275|gb|ETM52987.1| (ULK/ULK protein kinase, variant 6 [Phytophthora parasitica] >gi|568056276|gb|ETM52988.1| ULK/ULK protein kinase, variant 7 [Phytophthora parasitica] >gi|570334213|gb|ETO82161.1| hypothetical protein, variant 6 [Phytophthora parasitica P1976] >gi|570334214|gb|ETO82162.1| hypothetical protein, variant 7 [Phytophthora parasitica P1976])

HSP 1 Score: 82.0333 bits (201), Expect = 9.664e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  358 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 462
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|675183917|ref|XP_008900843.1| (hypothetical protein, variant 6 [Phytophthora parasitica INRA-310] >gi|675183919|ref|XP_008900844.1| hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|568099044|gb|ETN13762.1| hypothetical protein, variant 6 [Phytophthora parasitica INRA-310] >gi|568099045|gb|ETN13763.1| hypothetical protein, variant 7 [Phytophthora parasitica INRA-310])

HSP 1 Score: 81.6481 bits (200), Expect = 9.836e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  358 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 462
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|675183893|ref|XP_008900831.1| (hypothetical protein PPTG_08482 [Phytophthora parasitica INRA-310] >gi|568099038|gb|ETN13756.1| hypothetical protein PPTG_08482 [Phytophthora parasitica INRA-310])

HSP 1 Score: 82.0333 bits (201), Expect = 9.936e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  449 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 553
[Close]
BLAST of EWM26250.1 vs. NCBI_GenBank
Match: gi|675183901|ref|XP_008900835.1| (hypothetical protein, variant 12 [Phytophthora parasitica INRA-310] >gi|675183903|ref|XP_008900836.1| hypothetical protein, variant 13 [Phytophthora parasitica INRA-310] >gi|675183905|ref|XP_008900837.1| hypothetical protein, variant 14 [Phytophthora parasitica INRA-310] >gi|568099050|gb|ETN13768.1| hypothetical protein, variant 12 [Phytophthora parasitica INRA-310] >gi|568099051|gb|ETN13769.1| hypothetical protein, variant 13 [Phytophthora parasitica INRA-310] >gi|568099052|gb|ETN13770.1| hypothetical protein, variant 14 [Phytophthora parasitica INRA-310])

HSP 1 Score: 81.6481 bits (200), Expect = 1.005e-12
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 0 
Query:  409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVEEEEGRVGEGEGEAKATPFSLAPGTRYAVVSVEPIKGLSESV--SLGSAGSSS 527
            I ++ F+ G VALF PTP GDY+AF+ GCPHYYLSE++ A   +D      YVLG I                 + + E   K  P+ L  GT+Y VVSV P+   S     SLG+A SSS
Sbjct:  272 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV---------------YIEDHETTDKLNPYCLREGTKYHVVSVTPLATSSHDANGSLGTADSSS 376
The following BLAST results are available for this feature:
BLAST of EWM26250.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM26250.1XP_005856063.1CBN78581.1ETM52981.1ETI53431.1ETM52993.1ETM52987.1XP_008900843.1XP_008900831.1XP_008900835.1
Match NameE-valueIdentityDescription
gi|585108249|gb|EWM26250.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|553194962|ref|XP_005856063.1|1.089e-83100.00protein kinase, partial [Nannochloropsis gaditana ... [more]
gi|299470640|emb|CBN78581.1|6.082e-2048.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|568056269|gb|ETM52981.1|8.944e-1342.15ULK/ULK protein kinase [Phytophthora parasitica] >... [more]
gi|566030520|gb|ETI53431.1|9.345e-1342.15hypothetical protein, variant 1 [Phytophthora para... [more]
gi|568056281|gb|ETM52993.1|9.451e-1342.15ULK/ULK protein kinase, variant 12 [Phytophthora p... [more]
gi|568056275|gb|ETM52987.1|9.664e-1342.15ULK/ULK protein kinase, variant 6 [Phytophthora pa... [more]
gi|675183917|ref|XP_008900843.1|9.836e-1342.15hypothetical protein, variant 6 [Phytophthora para... [more]
gi|675183893|ref|XP_008900831.1|9.936e-1342.15hypothetical protein PPTG_08482 [Phytophthora para... [more]
gi|675183901|ref|XP_008900835.1|1.005e-1242.15hypothetical protein, variant 12 [Phytophthora par... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4439rna4439Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications