rna4438, rna4438 (mRNA) Nannochloropsis gaditana

Overview
Namerna4438
Unique Namerna4438
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2679
Alignment locationCM002463.1:589552..590436 +

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-prolyl cis-trans isomerase cyclophilin type
Orig transcript idgnl|cribi|Naga_100025g55.7511.mrna
Orig protein idgnl|cribi|Naga_100025g55.7511
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:589552..590436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g55gene4282Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4438rna4438-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26220.1cds4427Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4438 ID=rna4438|Name=rna4438|organism=Nannochloropsis gaditana|type=mRNA|length=2679bp
ATGGTGCTTTCATGGCTTTTGATCAATCTTTTTCTTACGAGCGAGCTACT
TCGCGCCGCCCGGATCCGGAAAAATAGCAATCGATACCAGAAGAACAAGG
GCTCAGACGACTCAGATCCCCAACCTGCGGACACAGCGCCCATTCCTGTC
GGCCTGGAGGATATTGTCAGGAACCTGCACGAACGTACGTGGGCCTCTAT
GGACTTACACGTGGTTCAAGACCGCCTGGCGGGCCTCTGCGACACGGTCC
GCGCCAAGGAATTGGCCCGGTCTCCGTGTTTTGCAGAGAATGTGGAGGAG
GTGCGTCGGCGGTACAAGGCTGTGGAGGAGATCTGGCAGTCCGCGGACGT
CATCCCCCTCAACGACCCAATGGACATCGCGCCCGCTGTCGCCTTTGCGG
CGCGGGGCAACGTCCTCGAGCTTCCCGACCTCCGGTCCATCGCCAAGGCC
CTCATAATTCTGGCCACACTGCGCGACTTCGTCCAGGCGCCCGTGCGAAA
AGAGCGCTTGTCCCAGCTGTCGCAGTACGCCGAGGAGATCGACTTACCCT
TTGAGCTTGTAGACCTTTTGAGCGACGCTTTCGACCAGGACGGCCGCCTC
TCCGGCGTCAAATTTCCACATCTCAAGCGCCTGCGTGATGAAGTAGATAG
ACTGTATGGGAGCATCAAGAACACGGTGGGCCAGCTTATGAAGAGCACGG
GGATGAGTCAGATGGTCACCGATGAGTACATCGCCCAGCGGAACGGCCGC
TTTGTCCTGCCCATCAAGAACACCTACAAACGCGCGGGACTGGGCATTGT
GCACGACCAGTCCAACACGGGCCAGACCGTGTACGTGGAGCCCGTGCAGG
TAATCGAACCTACCAACGACATGAAGCGCCTCGAGCTGGAGCTGCTGCAG
GAGGAGGCCCGCATCGTCGGGGAGATGACGCGGCTGGTGGCCGTTTCCAA
GGACAAGATCCTCCAAAGCCTGGACGCAGGGGCTTTGATCGACATATCAG
TGGCCCGCGCCAAGCTGGGCGACCTGATGGGGGGCGCGGTGGTGCCAGAG
GTGGGCACGGATGGCTGCATCTCGGCCGAAGACGCCCGCCACCCCGTCCT
CCTCCTCCGCAACCGGAACCCCATCGGCAACACCCTCCACATCGACCCCG
CCAAGCCGGGCCTGGTCCTCACGGGGCCGAACGCGGGCGGGAAGACGATC
GTGCTCAAGACCTTGGGCCTGCTGGCCTTGCTGGTCCGCCTGGGCATTCC
CGTCCCGGCCCGGCGGGGGGTCCGGGTGGACTTCTTCTCCCCCATCCTGG
CCGACATCGGAGACATGCAGAGCGTCACGGGCGATCTTTCCACCTTCTCG
GGCCACCTGCTCGTCTGCCGCGAGGTCCTCTCGAACGCCGCGTCCGGGGC
CTTGGTCTTAATGGACGAGATGGGGAGTGGGACCGATCCCGCCCAGGGCG
TGGCCATCGCGCAGGCCTTGCTGGAAGCGCTCTTGGAGACGGGGGCGCGC
GTGGCCATCACCACTCACTATTTGCAGTTGAAGGAGTTGGCGCAGAAAGA
CGACCGTTTCACGGTGGGGGCAATGGAATTTTTGAACGGGAAACCCACCT
ACCGGTTCCGTGAGGGAGCGATCGGGGAGTCGTACGCCCTGGAGGTGGCT
GAGCGCTTGGAGCTTCCCGCCTCCGTCTTGGCCCGCGCCAAGGGTCTGAT
GGGGGGCGGCGCCCTGAGGGTGACGGAGCTGATCAAGGAGCTTGAGGACC
AGCGGGACGCCCTGCAGGGAGAGATGGAGGATGCGCGGGCGAGGGAGGAG
GAGCTTCGGGCGGCGCAGGAGGCGGTAGAGGCCCAAAAAGTTGAATTGGG
AGCCCGGGAGGTGGAGCTGGACAAGATGAAATACCGGGCGAAATTGGAGA
CCGCCGACGCGTTCCTGGCCCAGCTGCAGGAGAAGGAGAAGAAGCTGGAG
GCGATGATGAAAGATGTGGGCTTGGGAGACACGAAGACAAGCGTGGAGGA
GGCGCTGAAGGAGCTTGCGGCCGTGAAAGCGAAGGTGGCAGAAGAAAGCA
AGCCGGAGGTGGTGCACGTCCCGGCCAATCTGGTGCTGCTGAAGCGTGAC
GATATCCTGAAGGAGGGCGAGGTGGTGGTCTGCGCGGGCGACCAATTGAA
CTCAGACAGGGCGGGGAAAGTGGTCAAGGCTTCGGGGCAGAACGTGGACG
TGATGTTCAGCAAGGGTGGATTGGATATCGTCATCACTTTCAAAAAAACG
GACCTGGCGCGAGCTCCTTCGGAAACGGCCGCAAGGGTGAACGCGGGACC
CTATGCGGGCCTGGCTAAAAACAAGGACAGGAAGAAGAAGTGGACCAAGG
CCGACGAACGAAACCTGAAATTGCTTGGACAGGAAGTTAGACACGCCTCA
ACTCCAGCAGCCATCACCTTGAATGCCATGCGGACCTCTTTTAATACAAT
TGACGTACGCGGCCTGCGCCTCCGAGATGCGGAGGCCAAGGTGGACAACT
TCATCAAGGTCGGCATTCCACAGAAGCGGAAAGTCGTGTATATATTGCAC
GGCCACGGTACGGGTCAACTAAAAGAAGGGTTGCGAGAGTTTATGAAACG
CCATCCTTACGTAAGTCGCCACCGTGCCGCTGACGATTCTGATGGAGGGG
ACGCTTTCACGCAAGTGTTCTTGAAGTAG
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protein sequence of rna4438

>rna4438-protein ID=rna4438-protein|Name=rna4438|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MVYKCLQRLLLFFFLSLSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEI
KSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWR
EEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWE
VPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADEDYLRRDFPKL
DYMKDCAIIPASAKKASIQEDRGRREETKRVVVGEERVPEETLNALSNAR
DKEPAWTEEWPYTWWGLLWVLGGLFGFLTMMWKLNNVKSLGKAR
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mRNA from alignment at CM002463.1:589552..590436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4438 ID=rna4438|Name=rna4438|organism=Nannochloropsis gaditana|type=mRNA|length=885bp|location=Sequence derived from alignment at CM002463.1:589552..590436+ (Nannochloropsis gaditana)
ATGGTCTACAAATGTTTGCAGCGGCTGCTcttgtttttcttcctgtcATT
ATCGCATGCGCAAGAACATCGGGGCGTTACTGAGATAAACGGGACGCTTG
TCAAATGTCATACTACGGCAGCGAACGGTGCGGCATTCATCTTTGAAATC
AAATCTGAATGGGCTCCTTTTGGAGCAGAACGTTTTTTGCAGCTGGTAGC
ATCTGGGTACTTCACAGATGTGCCTTTTTTCCGCGTGGTACCAGGATTCT
TGACACAATTCGGCATCCCTCCGCCATCGGCCGTGCGGAAACGCTGGCGT
GAGGAAGGCTCAATACCCGATGATCCTTCTCAAAATCGACAGATCCTTCG
GGGCTACTTAAGTTTTGCTGGCGCGGGTCCAAACACACGGGACACACAGC
TATTCATCGCCTTAGCTGACAGTTCATGGTTAGGGAAGTCTCCATGGGAG
GTGCCCGTAGGTCGAGTCATAGAGGGAATGGATGTGATCGATGCTTTGTA
TGCCGGTTACGGTGAGATTTCACCGTTCAATAAAGAAGGAGTGGAACAAT
ACAAAATATGGGCAGATGAAGATTATTTGCGGAGAGATTTCCCGAAATTA
GACTACATGAAAGACTGTGCTATCATCCCAGCTTCTGCCAAGAAAGCCTC
AATTCAGGAGGATCGAGGCCGGCGTGAAGAAACCAAGAGAGTAGTTGTCG
GTGAAGAGCGAGTCCCCGAGGAAACCCTGAATGCGTTGTCCAACGCGAGA
GATAAAGAGCCTGCGTGGACTGAAGAGTGGCCTTACACCTGGTGGGGCCT
CCTCTGGGTTCTCGGAGGACTGTTCGGATTTTTGACCATGATGTGGAAGT
TAAATAACGTTAAGAGCCTGGGTAAAGCAAGATGA
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Coding sequence (CDS) from alignment at CM002463.1:589552..590436+

>rna4438 ID=rna4438|Name=rna4438|organism=Nannochloropsis gaditana|type=CDS|length=885bp|location=Sequence derived from alignment at CM002463.1:589552..590436+ (Nannochloropsis gaditana)
ATGGTCTACAAATGTTTGCAGCGGCTGCTcttgtttttcttcctgtcATT
ATCGCATGCGCAAGAACATCGGGGCGTTACTGAGATAAACGGGACGCTTG
TCAAATGTCATACTACGGCAGCGAACGGTGCGGCATTCATCTTTGAAATC
AAATCTGAATGGGCTCCTTTTGGAGCAGAACGTTTTTTGCAGCTGGTAGC
ATCTGGGTACTTCACAGATGTGCCTTTTTTCCGCGTGGTACCAGGATTCT
TGACACAATTCGGCATCCCTCCGCCATCGGCCGTGCGGAAACGCTGGCGT
GAGGAAGGCTCAATACCCGATGATCCTTCTCAAAATCGACAGATCCTTCG
GGGCTACTTAAGTTTTGCTGGCGCGGGTCCAAACACACGGGACACACAGC
TATTCATCGCCTTAGCTGACAGTTCATGGTTAGGGAAGTCTCCATGGGAG
GTGCCCGTAGGTCGAGTCATAGAGGGAATGGATGTGATCGATGCTTTGTA
TGCCGGTTACGGTGAGATTTCACCGTTCAATAAAGAAGGAGTGGAACAAT
ACAAAATATGGGCAGATGAAGATTATTTGCGGAGAGATTTCCCGAAATTA
GACTACATGAAAGACTGTGCTATCATCCCAGCTTCTGCCAAGAAAGCCTC
AATTCAGGAGGATCGAGGCCGGCGTGAAGAAACCAAGAGAGTAGTTGTCG
GTGAAGAGCGAGTCCCCGAGGAAACCCTGAATGCGTTGTCCAACGCGAGA
GATAAAGAGCCTGCGTGGACTGAAGAGTGGCCTTACACCTGGTGGGGCCT
CCTCTGGGTTCTCGGAGGACTGTTCGGATTTTTGACCATGATGTGGAAGT
TAAATAACGTTAAGAGCCTGGGTAAAGCAAGATGA
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Synonyms
Publications