EWM26220.1, cds4427 (CDS) Nannochloropsis gaditana

Overview
NameEWM26220.1
Unique Namecds4427
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:589552..590436 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26220.1
Productpeptidyl-prolyl cis-trans isomerase cyclophilin type
Orig transcript idgnl|cribi|Naga_100025g55.7511.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:589552..590436 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|585108219|gb|EWM26220.1| (peptidyl-prolyl cis-trans isomerase cyclophilin type [Nannochloropsis gaditana])

HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query:    1 MVYKCLQRLLLFFFLSLSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADEDYLRRDFPKLDYMKDCAIIPASAKKASIQEDRGRREETKRVVVGEERVPEETLNALSNARDKEPAWTEEWPYTWWGLLWVLGGLFGFLTMMWKLNNVKSLGKAR 294
            MVYKCLQRLLLFFFLSLSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADEDYLRRDFPKLDYMKDCAIIPASAKKASIQEDRGRREETKRVVVGEERVPEETLNALSNARDKEPAWTEEWPYTWWGLLWVLGGLFGFLTMMWKLNNVKSLGKAR
Sbjct:    1 MVYKCLQRLLLFFFLSLSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADEDYLRRDFPKLDYMKDCAIIPASAKKASIQEDRGRREETKRVVVGEERVPEETLNALSNARDKEPAWTEEWPYTWWGLLWVLGGLFGFLTMMWKLNNVKSLGKAR 294          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|298706059|emb|CBJ29169.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 182.956 bits (463), Expect = 1.813e-52
Identity = 95/197 (48.22%), Postives = 125/197 (63.45%), Query Frame = 0
Query:   17 LSHAQEHRGVTEINGTLVKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPP--PSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMD-VIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAII 209
            L  + E  G T    T V+C TT A+  AF  E+   W+P GAERF+ LV   YFTDV  FR V  FL QFGI P   S  +K WRE+G I DDP+      RG LSFAG+GPN+R TQ+FI  AD   LGK+PWE P+G V +GMD V+D  Y GYG+  PFN++G+ Q  + +  + YLR +FP++ Y+K+C ++
Sbjct:    9 LGISNEEEGKT----TRVQC-TTTASPEAFTLEVYHSWSPNGAERFVDLVKDDYFTDVALFRCVKNFLVQFGISPYVSSPKKKFWREKGPIKDDPNLQISFKRGMLSFAGSGPNSRGTQVFITFADIPHLGKTPWETPLGIVTQGMDTVVDKFYTGYGDQQPFNQDGINQGTLQSRGNAYLREEFPEISYLKECRVV 200          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1085032720|gb|OGS37827.1| (peptidylprolyl isomerase [Elusimicrobia bacterium RIFOXYA2_FULL_69_6])

HSP 1 Score: 161.384 bits (407), Expect = 1.240e-45
Identity = 83/166 (50.00%), Postives = 111/166 (66.87%), Query Frame = 0
Query:   46 FIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAIIP 210
            F+ EI  +WAP GA+RF +LV SG+F DV FFR + GF+ QFGI    AV  +WR   +IPDDP+  R   RG L+FA AGP TR TQLFI   D+  L    +  P+G+V EGM V+D+LY GYGE +P +  G +Q ++ A+ + YL+RDFPKLDY+K   ++P
Sbjct:   13 FVIEIHRDWAPRGADRFYELVKSGFFQDVAFFRAIDGFMVQFGIHGDPAVSAKWRGA-NIPDDPASGRSNSRGALTFATAGPGTRTTQLFINFGDNGNLDGMGF-TPIGQVAEGMSVVDSLYKGYGEGAP-SGMGPDQGRVQAEGNAYLKRDFPKLDYIKSAQLVP 175          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1125152288|gb|OLB08743.1| (peptidylprolyl isomerase [Gemmatimonadetes bacterium 13_2_20CM_69_27] >gi|1125208339|gb|OLB59845.1| peptidylprolyl isomerase [Gemmatimonadetes bacterium 13_2_20CM_2_69_23] >gi|1125428967|gb|OLD58517.1| peptidylprolyl isomerase [Gemmatimonadetes bacterium 13_1_20CM_69_28])

HSP 1 Score: 146.747 bits (369), Expect = 7.341e-40
Identity = 83/165 (50.30%), Postives = 105/165 (63.64%), Query Frame = 0
Query:   46 FIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAII 209
            F+ E+  +WAPFGA+RF  LV SGY+ D  FFRV+ GF+ QFGI     V   WR +  IPDDP +     RG +SFA AGP TR TQLFI  AD+S L    +  P GRV+ GMDV+D LY GYGE +P  + G  Q +I A+ + YL R+FPKLD +K   I+
Sbjct:   20 FVVEVHRDWAPFGADRFYNLVKSGYYDDARFFRVITGFMAQFGIHGDPHVAAVWR-DARIPDDPVRQHN-SRGAVSFATAGPGTRTTQLFINYADNSRLDGMGFS-PFGRVVLGMDVVDRLYPGYGEGAPGGR-GPNQGRIQAEGNAYLTREFPKLDRIKRATIV 180          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1125336441|gb|OLC77220.1| (peptidylprolyl isomerase [Gemmatimonadetes bacterium 13_1_40CM_4_69_8])

HSP 1 Score: 146.747 bits (369), Expect = 8.723e-40
Identity = 79/167 (47.31%), Postives = 106/167 (63.47%), Query Frame = 0
Query:   44 AAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAII 209
             AF+ +++ +WAP GA+RF  LV SGYF    FFRV+PGF+ QFGI     V   WRE  +I DDP +     RG +SFA AGP TR TQLF+   D+S L    +  P GRV++GMDV+D LY GYGE +P  + G +Q  + A  + YL R FP+LDY++  +I+
Sbjct:   33 GAFVIQVQRDWAPLGADRFYNLVKSGYFAGARFFRVIPGFMAQFGIHGDPPVAAAWREA-TIADDPVRQHNT-RGAVSFATAGPGTRTTQLFVNYGDNSQLDGMGF-APFGRVVDGMDVVDRLYGGYGEGAPRGR-GPDQGLVQAQGNAYLERAFPQLDYVRVASIV 195          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1085046077|gb|OGS48617.1| (peptidylprolyl isomerase [Elusimicrobia bacterium RIFOXYB2_FULL_62_6])

HSP 1 Score: 145.976 bits (367), Expect = 1.383e-39
Identity = 79/177 (44.63%), Postives = 113/177 (63.84%), Query Frame = 0
Query:   34 VKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAII 209
            VK  T+  +   F  E+  +WAP GA+RF  LV +GYFTD+ FFRVV GF+ QFGI    AV  +WR E  I DDP +     +G L++A AGP+TR TQLFI   ++++L    +  P G+V EGM V+D+LY+GYGE +P    G +Q +I  + + YL++DFPK+DY+    ++
Sbjct:   20 VKFKTSKGD---FTVEVYKDWAPLGADRFYNLVKAGYFTDIAFFRVVSGFMVQFGIHGDPAVSAKWR-EARIQDDPVKQSNA-KGNLTYAMAGPDTRTTQLFINFGNNAFLDSQGFP-PFGKVTEGMSVVDSLYSGYGEGAP-RGMGPDQGRIQMEGNAYLKKDFPKMDYILSAEVL 189          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1084936032|gb|OGR53360.1| (peptidylprolyl isomerase [Elusimicrobia bacterium GWA2_62_23])

HSP 1 Score: 145.976 bits (367), Expect = 1.557e-39
Identity = 79/177 (44.63%), Postives = 111/177 (62.71%), Query Frame = 0
Query:   34 VKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAII 209
            VK  TT  +   F  EI  +W+P GA+RF  LV +GYFTDV FFRV+ GF+ QFGI     V   WR    I DDP +     +GY+S+A AGPNTR TQLFI   ++  L    +  P G+V EGMDV++++Y+GYGE +P +  G +Q ++    + YL++DFPK+DY+K   ++
Sbjct:   20 VKFKTTKGD---FTLEITRDWSPLGADRFYNLVKAGYFTDVAFFRVIEGFMVQFGIHGDPEVSAAWR-GARIQDDPVKQSNA-KGYISYAMAGPNTRTTQLFINYGNNGRLDDMGFS-PFGKVTEGMDVVESIYSGYGEGAP-SGMGPDQGRVQMQGNAYLKKDFPKMDYIKSAELL 189          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1084997990|gb|OGS08632.1| (peptidylprolyl isomerase [Elusimicrobia bacterium RIFOXYA12_FULL_51_18] >gi|1085021810|gb|OGS28657.1| peptidylprolyl isomerase [Elusimicrobia bacterium RIFOXYA2_FULL_53_38])

HSP 1 Score: 145.591 bits (366), Expect = 2.559e-39
Identity = 74/164 (45.12%), Postives = 107/164 (65.24%), Query Frame = 0
Query:   46 FIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAI 208
            F  ++   WAP GA+RF  LV  GYFTD+ FFRV+ GF+ QFGI    AV  +WRE G   D P+Q+   L+GY+++A AGP+TR TQLFI   D+S L    +  P G+V +GM+V++++Y+GYGE +P +  G EQ +     + Y ++DFPKLDY+   ++
Sbjct:   29 FTVDVTRAWAPLGADRFYNLVKIGYFTDLAFFRVISGFMVQFGIHGDPAVSAKWREAGIADDVPAQSN--LKGYITYAMAGPDTRTTQLFINYGDNSRLDSMNF-APFGKVTKGMEVVESIYSGYGEGAP-SGMGPEQGRAQMQGNAYFKKDFPKLDYITSASL 188          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1084948510|gb|OGR64255.1| (peptidylprolyl isomerase [Elusimicrobia bacterium GWB2_63_22])

HSP 1 Score: 142.895 bits (359), Expect = 2.160e-38
Identity = 77/177 (43.50%), Postives = 109/177 (61.58%), Query Frame = 0
Query:   34 VKCHTTAANGAAFIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAII 209
            VK  TT     AF  E+   W+P GA+RF  LV +GYF D+ FFRV+ GF+ QFGI    AV   WR    I DDP +     +GY+SFA AGPNTR TQ+FI   D+  L    +  P G+V EGMDV++++Y+GYGE +P +  G +Q ++    + YL+ +FP++DY+K   ++
Sbjct:   20 VKFDTTKG---AFTLEVTRAWSPLGADRFYNLVKNGYFADIAFFRVISGFMVQFGIHGDPAVASAWR-GARIQDDPVKQSNT-KGYISFAMAGPNTRTTQMFINFGDNERLDGMGFS-PFGKVTEGMDVVESIYSGYGEGAP-SGMGPDQGRVQMQGNAYLKAEFPRMDYIKSAQLL 189          
BLAST of EWM26220.1 vs. NCBI_GenBank
Match: gi|1063645254|gb|ODR93473.1| (peptidylprolyl isomerase [Methyloceanibacter superfactus])

HSP 1 Score: 142.895 bits (359), Expect = 2.266e-38
Identity = 77/164 (46.95%), Postives = 104/164 (63.41%), Query Frame = 0
Query:   46 FIFEIKSEWAPFGAERFLQLVASGYFTDVPFFRVVPGFLTQFGIPPPSAVRKRWREEGSIPDDPSQNRQILRGYLSFAGAGPNTRDTQLFIALADSSWLGKSPWEVPVGRVIEGMDVIDALYAGYGEISPFNKEGVEQYKIWADED-YLRRDFPKLDYMKDCAI 208
            F+ E+  +W+P GA+RF  LV +GY+ DV FFRV+ GF+ QFGI     +   WR E  IPDD  +     RGY+SFA AGP TR TQ+FI   D++ L    +  P G+V+ GMDV+DALY GYGE +P  + G +Q ++  + + YL  DFPKLDY+K   I
Sbjct:   20 FVIEVHRDWSPNGADRFYNLVKNGYYNDVRFFRVIDGFMVQFGISGNPDLSAVWR-EARIPDDKVKESN-QRGYVSFATAGPGTRTTQVFINFGDNAGLDGQGFS-PFGQVVSGMDVVDALYNGYGEGAPRGR-GPDQGRMQMEGNAYLMTDFPKLDYVKKATI 179          
The following BLAST results are available for this feature:
BLAST of EWM26220.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108219|gb|EWM26220.1|0.000e+0100.00peptidyl-prolyl cis-trans isomerase cyclophilin ty... [more]
gi|298706059|emb|CBJ29169.1|1.813e-5248.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|1085032720|gb|OGS37827.1|1.240e-4550.00peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
gi|1125152288|gb|OLB08743.1|7.341e-4050.30peptidylprolyl isomerase [Gemmatimonadetes bacteri... [more]
gi|1125336441|gb|OLC77220.1|8.723e-4047.31peptidylprolyl isomerase [Gemmatimonadetes bacteri... [more]
gi|1085046077|gb|OGS48617.1|1.383e-3944.63peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
gi|1084936032|gb|OGR53360.1|1.557e-3944.63peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
gi|1084997990|gb|OGS08632.1|2.559e-3945.12peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
gi|1084948510|gb|OGR64255.1|2.160e-3843.50peptidylprolyl isomerase [Elusimicrobia bacterium ... [more]
gi|1063645254|gb|ODR93473.1|2.266e-3846.95peptidylprolyl isomerase [Methyloceanibacter super... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4438rna4438Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications