rna4437, rna4437 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4437
Unique Name	rna4437
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	573
Alignment location	CM002463.1:586180..589130 +

Link to JBrowse

Properties


Property Name	Value
Product	dna mismatch repair protein
Orig transcript id	gnl\|cribi\|Naga_100025g56.7522.mrna
Orig protein id	gnl\|cribi\|Naga_100025g56.7522
Gene	MSH1B
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:586180..589130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSH1B	gene4281	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4437	rna4437-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26231.1	cds4426	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:586180..589130+
coding sequence from alignment at CM002463.1:586180..589130+

mRNA sequence

>rna4437 ID=rna4437|Name=rna4437|organism=Nannochloropsis gaditana|type=mRNA|length=573bp
ATGTCTTCTAAACGTGGACGCGGGGGTACCACCGGTGCCAAATTCCGCAC
GACCCTGGGTCTCCCCGTAGCGGCCGTCATCAACTGCGCCGATAACACCG
GAGCCAAGAACTTGCACATCATTGCCGTGGGAGGGGTGAAAGGCCGATTG
AATCGGCTGCCCCAAGCAAGTCTGGGGGATATGGTCATGGCGTCCGTGCG
AAAAGGGAAGCCCGAGCTGCGTAAGAAGAAAAGATGGGATTTTCATCTAT
TTCGAGGACAACGCTGGAGTCATCGTCAACAACAAGGGGGAGATGAAGGG
GTCGGCCATCACAGGCCCTGTGGCGAAGGAATGCGCGGACCTGTGGCCTC
GTATCGCCTCCAACTCTGGCACGATTGTCTGAAGCCCCGGACGGTGCTTT
GTCACGAGTATCCAGAATGGGCGGGAGGAATGAGCTCTATCTCTGACTAC
CTGAGGCGGAAGAAGAGACACTTGGCGAATGAACAGAGAGGCCTCGTCGA
TACCTTTCCTTCTGATCTATCGGCGCTGAGACGAACCAGGCTTAGGGGCT
CCGCCAAAATATGGAGTGGATAG

protein sequence of rna4437

>rna4437-protein ID=rna4437-protein|Name=rna4437|organism=Nannochloropsis gaditana|type=polypeptide|length=892bp
MVLSWLLINLFLTSELLRAARIRKNSNRYQKNKGSDDSDPQPADTAPIPV
GLEDIVRNLHERTWASMDLHVVQDRLAGLCDTVRAKELARSPCFAENVEE
VRRRYKAVEEIWQSADVIPLNDPMDIAPAVAFAARGNVLELPDLRSIAKA
LIILATLRDFVQAPVRKERLSQLSQYAEEIDLPFELVDLLSDAFDQDGRL
SGVKFPHLKRLRDEVDRLYGSIKNTVGQLMKSTGMSQMVTDEYIAQRNGR
FVLPIKNTYKRAGLGIVHDQSNTGQTVYVEPVQVIEPTNDMKRLELELLQ
EEARIVGEMTRLVAVSKDKILQSLDAGALIDISVARAKLGDLMGGAVVPE
VGTDGCISAEDARHPVLLLRNRNPIGNTLHIDPAKPGLVLTGPNAGGKTI
VLKTLGLLALLVRLGIPVPARRGVRVDFFSPILADIGDMQSVTGDLSTFS
GHLLVCREVLSNAASGALVLMDEMGSGTDPAQGVAIAQALLEALLETGAR
VAITTHYLQLKELAQKDDRFTVGAMEFLNGKPTYRFREGAIGESYALEVA
ERLELPASVLARAKGLMGGGALRVTELIKELEDQRDALQGEMEDARAREE
ELRAAQEAVEAQKVELGAREVELDKMKYRAKLETADAFLAQLQEKEKKLE
AMMKDVGLGDTKTSVEEALKELAAVKAKVAEESKPEVVHVPANLVLLKRD
DILKEGEVVVCAGDQLNSDRAGKVVKASGQNVDVMFSKGGLDIVITFKKT
DLARAPSETAARVNAGPYAGLAKNKDRKKKWTKADERNLKLLGQEVRHAS
TPAAITLNAMRTSFNTIDVRGLRLRDAEAKVDNFIKVGIPQKRKVVYILH
GHGTGQLKEGLREFMKRHPYVSRHRAADDSDGGDAFTQVFLK

mRNA from alignment at CM002463.1:586180..589130+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4437 ID=rna4437|Name=rna4437|organism=Nannochloropsis gaditana|type=mRNA|length=2951bp|location=Sequence derived from alignment at CM002463.1:586180..589130+ (Nannochloropsis gaditana)
ATGGTGCTTTCATGGCTTTTGATCAATCTTTTTCTTACGAGCGGTGAGTC
TTCATTGCGATATCGTGCAGGAATTTGGGTGGTGAGCTGAGGCTTTCAAG
GGAGGAGTCTTTCGTGGGGCCACGTACCCACCTTCTAACATAATGGCCAT
CCATTTGCATATTAGTGGGTGCCTTTTACAGAACGATCTCTCCTACAAGT
ACGAGAATCCTTGGCAACGGATGGAAAACTGTACAAAGAataaatcctcc
tcctcttgacgcTGTATTTTCTCGCCACTCCGTGATCACGACCTCTGCGT
CGCTGTCCGACGCAGAGCTACTTCGCGCCGCCCGGATCCGGAAAAATAGC
AATCGATACCAGAAGAACAAGGGCTCAGACGACTCAGATCCCCAACCTGC
GGACACAGCGCCCATTCCTGTCGGCCTGGAGGATATTGTCAGGAACCTGC
ACGAACGTACGTGGGCCTCTATGGACTTACACGTGGTTCAAGACCGCCTG
GCGGGCCTCTGCGACACGGTCCGCGCCAAGGAATTGGCCCGGTCTCCGTG
TTTTGCAGAgaatgtggaggaggtgcgtcGGCGGTACAAGGCTGTGGAGG
AGATCTGGCAGTCCGCGGACGTCATCCCCCTCAACGACCCAATGGACATC
GCGCCCGCTGTCGCCTTTGCGGCGCGGGGCAACGTCCTCGAGCTTCCCGA
CCTCCGGTCCATCGCCAAGGCCCTCATAATTCTGGCCACACTGCGCGACT
TCGTCCAGGCGCCCGTGCGAAAAGAGCGCTTGTCCCAGCTGTCGCAGTAC
GCCGAGGAGATCGACTTACCCTTTGAGCTTGTAGACCTTTTGAGCGACGC
TTTCGACCAGGACGGCCGCCTCTCCGGCGTCAAATTTCCACATCTCAAGC
GCCTGCGTGATGAAGTAGATAGACTGTATGGGAGCATCAAGAACACGGTG
GGCCAGCTTATGAAGAGCACGGGGATGAGTCAGATGGTCACCGATGAGTA
CATCGCCCAGCGGAACGGCCGCTTTGTCCTGCCCATCAAGAACACCTACA
AACGCGCGGGACTGGGCATTGTGCACGACCAGTCCAACACGGGCCAGACC
GTGTACGTGGAGCCCGTGCAGGTAATCGAACCTACCAACGACATGAAGCG
CCTCGAGCTGGAGctgctgcaggaggaggcccgCATCGTCGGGGAGATGA
CGCGGCTGGTGGCCGTTTCCAAGGACAAGATCCTCCAAAGCCTGGACGCA
GGGGCTTTGATCGACATATCAGTGGCCCGCGCCAAGCTGGGCGACCTGAT
GGGGGGCGCGGTGGTGCCAGAGGTGGGCACGGATGGCTGCATCTCGGCCG
AAGACGCCcgccaccccgtcctcctcctccgcaacCGGAACCCCATCGGC
AACACCCTCCACATCGACCCCGCCAAGCCGGGCCTGGTCCTCACGGGGCC
GAAcgcgggcgggaagacgaTCGTGCTCAAGACCTTGGGCCTGCTGGCCT
TGCTGGTCCGCCTGGGCATTCCCGTCCCGGCCCGGCGGGGGGTCCGGGTG
gacttcttctcccccatccTGGCCGACATCGGAGACATGCAGAGCGTCAC
GGGCGATCTTTCCACCTTCTCGGGCCACCTGCTCGTCTGCCGCGAGGTCC
TCTCGAACGCCGCGTCCGGGGCCTTGGTCTTAATGGACGAGATGGGGAGT
GGGACCGATCCCGCCCAGGGCGTGGCCATCGCGCAGGCCTTGCTGGAAGC
GCTCTTGGAGACGGGGGCGCGCGTGGCCATCACCACTCACTATTTGCAGT
TGAAGGAGTTGGCGCAGAAAGACGACCGTTTCACGGTGGGGGCAATGGAA
TTTTTGAACGGGAAACCCACCTACCGGTTCCGTGAGGGAGCGATCGGGGA
GTCGTACGCCCTGGAGGTGGCTGAGCGCTTGGAgcttcccgcctccgtct
TGGCCCGCGCCAAGGGTCTGATGGGGGGCGGCGCCCTGAGGGTGACGGAG
CTGATCAAGGAGCTTGAGGACCAGCGGGACGCCCTGcagggagagatgga
ggatgcgcgggcgagggaggaggagcttcggGCGGCGCAGGAGGCGGTAG
AGGCCCAAAAAGTTGAATTGGGAGcccgggaggtggagctggaCAAGATG
AAATACCGGGCGAAATTGGAGACCGCCGACGCGTTCCTGGCCCagctgca
ggagaaggagaagaagctgGAGGCGATGATGAAAGATGTGGGCTTGGGAG
ACACGAAGAcaagcgtggaggaggcgctgaagGAGCTTGCGGCCGTGAAA
GCGAAGGTGGCAGAAGAAAGCAAGCCGGAGGTGGTGCACGTCCCGGCCAA
TCTGGTGCTGCTGAAGCGTGACGATAtcctgaaggagggcgaggtggtgg
TCTGCGCGGGCGACCAATTGAACTCAgacagggcggggaaagtgGTCAAG
GCTTCGGGGCAGAACGTGGACGTGATGTTCAGCAAGGGTGGATTGGATAT
CGTCATCACTTTCAAAAAAACGGACCTGGCGCGAGCTCCTTCGGAAACGG
CCGCAAGGGTGAACGCGGGACCCTATGCGGGCCTGGCTAAAAAcaaggac
aggaagaagaagtggaCCAAGGCCGACGAACGAAACCTGAAATTGCTTGG
ACAGGAAGTTAGACACGCCTCAACTCCAGCAGCCATCACCTTGAATGCCA
TGCGGACCTCTTTTAATACAATTGACGTACGCGGCCTGCGCCTCCGAGAT
GCGGAGGCCAAGGTGGACAACTTCATCAAGGTCGGCATTCCACAGAAGCG
GAAAGTCGTGTATATATTGCACGGCCACGGTACGGGTCAACTAAAAGAAG
GGTTGCGAGAGTTTATGAAACGCCATCCTTACGTAAGTCGCCACCGTGCC
GCTGACGATTCTGATGGAGGGGACGCTTTCACGCAAGTGTTCTTGAAGTA
G

Coding sequence (CDS) from alignment at CM002463.1:586180..589130+

>rna4437 ID=rna4437|Name=rna4437|organism=Nannochloropsis gaditana|type=CDS|length=5358bp|location=Sequence derived from alignment at CM002463.1:586180..589130+ (Nannochloropsis gaditana)
ATGGTGCTTTCATGGCTTTTGATCAATCTTTTTCTTACGAGCGAGCTACT
TCGCGCCGCCCGGATCCGGAAAAATAGCAATCGATACCAGAAGAACAAGG
GCTCAGACGACTCAGATCCCCAACCTGCGGACACAGCGCCCATTCCTGTC
GGCCTGGAGGATATTGTCAGGAACCTGCACGAACGTACGTGGGCCTCTAT
GGACTTACACGTGGTTCAAGACCGCCTGGCGGGCCTCTGCGACACGGTCC
GCGCCAAGGAATTGGCCCGGTCTCCGTGTTTTGCAGAgaatgtggaggag
gtgcgtcGGCGGTACAAGGCTGTGGAGGAGATCTGGCAGTCCGCGGACGT
CATCCCCCTCAACGACCCAATGGACATCGCGCCCGCTGTCGCCTTTGCGG
CGCGGGGCAACGTCCTCGAGCTTCCCGACCTCCGGTCCATCGCCAAGGCC
CTCATAATTCTGGCCACACTGCGCGACTTCGTCCAGGCGCCCGTGCGAAA
AGAGCGCTTGTCCCAGCTGTCGCAGTACGCCGAGGAGATCGACTTACCCT
TTGAGCTTGTAGACCTTTTGAGCGACGCTTTCGACCAGGACGGCCGCCTC
TCCGGCGTCAAATTTCCACATCTCAAGCGCCTGCGTGATGAAGTAGATAG
ACTGTATGGGAGCATCAAGAACACGGTGGGCCAGCTTATGAAGAGCACGG
GGATGAGTCAGATGGTCACCGATGAGTACATCGCCCAGCGGAACGGCCGC
TTTGTCCTGCCCATCAAGAACACCTACAAACGCGCGGGACTGGGCATTGT
GCACGACCAGTCCAACACGGGCCAGACCGTGTACGTGGAGCCCGTGCAGG
TAATCGAACCTACCAACGACATGAAGCGCCTCGAGCTGGAGctgctgcag
gaggaggcccgCATCGTCGGGGAGATGACGCGGCTGGTGGCCGTTTCCAA
GGACAAGATCCTCCAAAGCCTGGACGCAGGGGCTTTGATCGACATATCAG
TGGCCCGCGCCAAGCTGGGCGACCTGATGGGGGGCGCGGTGGTGCCAGAG
GTGGGCACGGATGGCTGCATCTCGGCCGAAGACGCCcgccaccccgtcct
cctcctccgcaacCGGAACCCCATCGGCAACACCCTCCACATCGACCCCG
CCAAGCCGGGCCTGGTCCTCACGGGGCCGAAcgcgggcgggaagacgaTC
GTGCTCAAGACCTTGGGCCTGCTGGCCTTGCTGGTCCGCCTGGGCATTCC
CGTCCCGGCCCGGCGGGGGGTCCGGGTGgacttcttctcccccatccTGG
CCGACATCGGAGACATGCAGAGCGTCACGGGCGATCTTTCCACCTTCTCG
GGCCACCTGCTCGTCTGCCGCGAGGTCCTCTCGAACGCCGCGTCCGGGGC
CTTGGTCTTAATGGACGAGATGGGGAGTGGGACCGATCCCGCCCAGGGCG
TGGCCATCGCGCAGGCCTTGCTGGAAGCGCTCTTGGAGACGGGGGCGCGC
GTGGCCATCACCACTCACTATTTGCAGTTGAAGGAGTTGGCGCAGAAAGA
CGACCGTTTCACGGTGGGGGCAATGGAATTTTTGAACGGGAAACCCACCT
ACCGGTTCCGTGAGGGAGCGATCGGGGAGTCGTACGCCCTGGAGGTGGCT
GAGCGCTTGGAgcttcccgcctccgtctTGGCCCGCGCCAAGGGTCTGAT
GGGGGGCGGCGCCCTGAGGGTGACGGAGCTGATCAAGGAGCTTGAGGACC
AGCGGGACGCCCTGcagggagagatggaggatgcgcgggcgagggaggag
gagcttcggGCGGCGCAGGAGGCGGTAGAGGCCCAAAAAGTTGAATTGGG
AGcccgggaggtggagctggaCAAGATGAAATACCGGGCGAAATTGGAGA
CCGCCGACGCGTTCCTGGCCCagctgcaggagaaggagaagaagctgGAG
GCGATGATGAAAGATGTGGGCTTGGGAGACACGAAGAcaagcgtggagga
ggcgctgaagGAGCTTGCGGCCGTGAAAGCGAAGGTGGCAGAAGAAAGCA
AGCCGGAGGTGGTGCACGTCCCGGCCAATCTGGTGCTGCTGAAGCGTGAC
GATAtcctgaaggagggcgaggtggtggTCTGCGCGGGCGACCAATTGAA
CTCAgacagggcggggaaagtgGTCAAGGCTTCGGGGCAGAACGTGGACG
TGATGTTCAGCAAGGGTGGATTGGATATCGTCATCACTTTCAAAAAAACG
GACCTGGCGCGAGCTCCTTCGGAAACGGCCGCAAGGGTGAACGCGGGACC
CTATGCGGGCCTGGCTAAAAAcaaggacaggaagaagaagtggaCCAAGG
CCGACGAACGAAACCTGAAATTGCTTGGACAGGAAGTTAGACACGCCTCA
ACTCCAGCAGCCATCACCTTGAATGCCATGCGGACCTCTTTTAATACAAT
TGACGTACGCGGCCTGCGCCTCCGAGATGCGGAGGCCAAGGTGGACAACT
TCATCAAGGTCGGCATTCCACAGAAGCGGAAAGTCGTGTATATATTGCAC
GGCCACGGTACGGGTCAACTAAAAGAAGGGTTGCGAGAGTTTATGAAACG
CCATCCTTACGTAAGTCGCCACCGTGCCGCTGACGATTCTGATGGAGGGG
ACGCTTTCACGCAAGTGTTCTTGAAGTAGATGGTGCTTTCATGGCTTTTG
ATCAATCTTTTTCTTACGAGCGAGCTACTTCGCGCCGCCCGGATCCGGAA
AAATAGCAATCGATACCAGAAGAACAAGGGCTCAGACGACTCAGATCCCC
AACCTGCGGACACAGCGCCCATTCCTGTCGGCCTGGAGGATATTGTCAGG
AACCTGCACGAACGTACGTGGGCCTCTATGGACTTACACGTGGTTCAAGA
CCGCCTGGCGGGCCTCTGCGACACGGTCCGCGCCAAGGAATTGGCCCGGT
CTCCGTGTTTTGCAGAgaatgtggaggaggtgcgtcGGCGGTACAAGGCT
GTGGAGGAGATCTGGCAGTCCGCGGACGTCATCCCCCTCAACGACCCAAT
GGACATCGCGCCCGCTGTCGCCTTTGCGGCGCGGGGCAACGTCCTCGAGC
TTCCCGACCTCCGGTCCATCGCCAAGGCCCTCATAATTCTGGCCACACTG
CGCGACTTCGTCCAGGCGCCCGTGCGAAAAGAGCGCTTGTCCCAGCTGTC
GCAGTACGCCGAGGAGATCGACTTACCCTTTGAGCTTGTAGACCTTTTGA
GCGACGCTTTCGACCAGGACGGCCGCCTCTCCGGCGTCAAATTTCCACAT
CTCAAGCGCCTGCGTGATGAAGTAGATAGACTGTATGGGAGCATCAAGAA
CACGGTGGGCCAGCTTATGAAGAGCACGGGGATGAGTCAGATGGTCACCG
ATGAGTACATCGCCCAGCGGAACGGCCGCTTTGTCCTGCCCATCAAGAAC
ACCTACAAACGCGCGGGACTGGGCATTGTGCACGACCAGTCCAACACGGG
CCAGACCGTGTACGTGGAGCCCGTGCAGGTAATCGAACCTACCAACGACA
TGAAGCGCCTCGAGCTGGAGctgctgcaggaggaggcccgCATCGTCGGG
GAGATGACGCGGCTGGTGGCCGTTTCCAAGGACAAGATCCTCCAAAGCCT
GGACGCAGGGGCTTTGATCGACATATCAGTGGCCCGCGCCAAGCTGGGCG
ACCTGATGGGGGGCGCGGTGGTGCCAGAGGTGGGCACGGATGGCTGCATC
TCGGCCGAAGACGCCcgccaccccgtcctcctcctccgcaacCGGAACCC
CATCGGCAACACCCTCCACATCGACCCCGCCAAGCCGGGCCTGGTCCTCA
CGGGGCCGAAcgcgggcgggaagacgaTCGTGCTCAAGACCTTGGGCCTG
CTGGCCTTGCTGGTCCGCCTGGGCATTCCCGTCCCGGCCCGGCGGGGGGT
CCGGGTGgacttcttctcccccatccTGGCCGACATCGGAGACATGCAGA
GCGTCACGGGCGATCTTTCCACCTTCTCGGGCCACCTGCTCGTCTGCCGC
GAGGTCCTCTCGAACGCCGCGTCCGGGGCCTTGGTCTTAATGGACGAGAT
GGGGAGTGGGACCGATCCCGCCCAGGGCGTGGCCATCGCGCAGGCCTTGC
TGGAAGCGCTCTTGGAGACGGGGGCGCGCGTGGCCATCACCACTCACTAT
TTGCAGTTGAAGGAGTTGGCGCAGAAAGACGACCGTTTCACGGTGGGGGC
AATGGAATTTTTGAACGGGAAACCCACCTACCGGTTCCGTGAGGGAGCGA
TCGGGGAGTCGTACGCCCTGGAGGTGGCTGAGCGCTTGGAgcttcccgcc
tccgtctTGGCCCGCGCCAAGGGTCTGATGGGGGGCGGCGCCCTGAGGGT
GACGGAGCTGATCAAGGAGCTTGAGGACCAGCGGGACGCCCTGcagggag
agatggaggatgcgcgggcgagggaggaggagcttcggGCGGCGCAGGAG
GCGGTAGAGGCCCAAAAAGTTGAATTGGGAGcccgggaggtggagctgga
CAAGATGAAATACCGGGCGAAATTGGAGACCGCCGACGCGTTCCTGGCCC
agctgcaggagaaggagaagaagctgGAGGCGATGATGAAAGATGTGGGC
TTGGGAGACACGAAGAcaagcgtggaggaggcgctgaagGAGCTTGCGGC
CGTGAAAGCGAAGGTGGCAGAAGAAAGCAAGCCGGAGGTGGTGCACGTCC
CGGCCAATCTGGTGCTGCTGAAGCGTGACGATAtcctgaaggagggcgag
gtggtggTCTGCGCGGGCGACCAATTGAACTCAgacagggcggggaaagt
gGTCAAGGCTTCGGGGCAGAACGTGGACGTGATGTTCAGCAAGGGTGGAT
TGGATATCGTCATCACTTTCAAAAAAACGGACCTGGCGCGAGCTCCTTCG
GAAACGGCCGCAAGGGTGAACGCGGGACCCTATGCGGGCCTGGCTAAAAA
caaggacaggaagaagaagtggaCCAAGGCCGACGAACGAAACCTGAAAT
TGCTTGGACAGGAAGTTAGACACGCCTCAACTCCAGCAGCCATCACCTTG
AATGCCATGCGGACCTCTTTTAATACAATTGACGTACGCGGCCTGCGCCT
CCGAGATGCGGAGGCCAAGGTGGACAACTTCATCAAGGTCGGCATTCCAC
AGAAGCGGAAAGTCGTGTATATATTGCACGGCCACGGTACGGGTCAACTA
AAAGAAGGGTTGCGAGAGTTTATGAAACGCCATCCTTACGTAAGTCGCCA
CCGTGCCGCTGACGATTCTGATGGAGGGGACGCTTTCACGCAAGTGTTCT
TGAAGTAG

Synonyms

Publications