rna4435, rna4435 (mRNA) Nannochloropsis gaditana

Overview
Namerna4435
Unique Namerna4435
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1019
Alignment locationCM002463.1:583408..584482 +

Link to JBrowse

Properties
Property NameValue
Productsuppressor enhancer of lin-12 protein 9
Orig transcript idgnl|cribi|Naga_100025g58.7491.mrna
Orig protein idgnl|cribi|Naga_100025g58.7491
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:583408..584482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g58gene4279Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4435rna4435-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26200.1cds4424Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4435 ID=rna4435|Name=rna4435|organism=Nannochloropsis gaditana|type=mRNA|length=1019bp
AGTCGATGACCGCGCGACTTAGAGCTCCTTGCGAAAGACCAGGGGACATT
TTCGTGCCTCCGTAACTTGTCTGAGCCTGAGAAGTAGCGCTGGTTTCAAG
AGAGGCGCCAAGATGCCTGCAAAAGACAATCGGCACCCCGTTTCCCCATC
CATTTTTCTCCGCGGTATCATCGCATCTGTGCTTTTACTCGTCCTTAAAC
ATGGTTTACATACTGAGAGGGCTCACGCTCATATTCTCTTTGCCATCTTT
CCCTCCTATACTTTTGCTCTTAAAGAAAAGCGTCGAAGTTCCCTTCCATG
TACTCTTTCTGTATCACCATCCCTTACTCGGGCATCGTCGCCTTGGGCGG
TATTATTGGCTACGTGAAAGCGGGCTCGTTACCGTCCCTTCTTGCGGGCC
TTGGCTTGGGAAGCGGATTGGCAATGCTAGGGTACGGGGAATTGCAGGAG
TATAAAAAGACGCAGGCCGTCACCCGGAAATGGACGCTTCTCTCTCTCCT
CGTTTCGGGAGGCATGACAATAGCCATGGGGCTGAAATGTGCGAAAACTA
AGGGGAGCTTGGCCCCGGCCATCTTTGCGTCCACTTCAGGTCTGGTGTCA
GTTTTCTTGATGTACCGTGTCGTAGTGCCTGTGCCTCCCAAGAAAGATAA
GAAGTAACTCGATTTGCCAGCATCAGAAGTGAGCATCTGGCTCAAAAATG
CACCGAGAAGACAGCGCTTATGGTGCTAGACATGACGAATGACTAGATGA
CAACACGTGGGATACTACATAATGGCAACTGGAGAATATGTAGGAGTGGT
GGTGCGGTCGGCGCATACTTTTGAAGGCACGACTGGAGCGGGAGCCTCGG
ACCACTTTCGGGAAGAGGGAGGGGAAGAGCAGCAGGAGAGACGGGAAGGC
GGGAGTAGAGCAACAGCAGCCAACCAAAGCAGATAAAATTTAGATTTCAG
GCCCAGCATAGATTACTGCCTTATATTCTTGCCTTCATTGCATTCATGTC
GAACAGAAGTTAGCTGCAA
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protein sequence of rna4435

>rna4435-protein ID=rna4435-protein|Name=rna4435|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGE
TGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASS
SAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSF
PASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSA
QRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVS
LFQLFWVRRWFEGRGLRARSREWA
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mRNA from alignment at CM002463.1:583408..584482+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4435 ID=rna4435|Name=rna4435|organism=Nannochloropsis gaditana|type=mRNA|length=1075bp|location=Sequence derived from alignment at CM002463.1:583408..584482+ (Nannochloropsis gaditana)
GCAatcggggaaaggagggaagaaccCGAGACTTGAGTACAGACGAGCCA
AGGCACCCACGAATACAATTTACCACCCAATCACAGGATTGTATTTGTGC
GCGATGACACAATCAAGACGGCGACCAAGGCCCCTGGATCTTGCTTTGCC
GTTGTTCGTGCTTTTCCTTATTCCCTCGCCTGCGCATCCGCTCAGCCTGG
AAGTACCGCCCCGTGACAAAGTATGCTTGTATCAGTACTACGATGTTGGG
GAGACAGGCAAAGCAGAGGTGTTCGTCGTCAATGGAGGCAATCTTGACAT
CGGCGTCAGTGTGGAAGGGCCATTCACGGACGACGTGCACGGTACACCGA
GCAAAACAACACAAGAGACTAAGACGGTGTATGACGCTATTGTGGCATCT
TCTAGCGCTTTTCTCAACCAACTGCACCCGGCGGGAGTCACAGCATCGGC
GGACGGAATCGAAATTAGCTGGCCAGCACAACCCGGTGCCTACGCCTTGT
GCCTCGACAACACCATGAGTCACGTCCAAACTAAAGTGATCGagttttcc
ttcccagcATCCAAGGAGGGTGCAGGTACGGATGACTTCGACTTGGACGC
CGCCTTGGCAGCTGCAAATGAGGGCAGCGGAACGAATGACACCATTTTAG
AGAACATAAAGCAATCTTACAAGGCCGACCTGGCCCTTCTGAAGCGTAGC
GCGCAGCGGATCGGCCGTACTTTAACGGACGTGCAGCATAAACAGGTGAA
AGAACGACATCGCCTCGCCCTTCAAACGGCAGCCAACCAGAAGAATCACC
AGAAGATGGTCGTGTCTTCCGTATTTGAAACCGTAGTTTTCATCAGCGTG
TCTCTTTTCCAACTTTTCTGGGTGCGGAGGTGGTTCGAGGGCCGGGGCCT
GCGGGCCCGGTCACGGGAATGGGCAtaagggaaagggcgacgCGGTGATA
TCACAGAATAAAGCATGCTCTCCATCATAAAGAAATCGCACAAAGAAATC
GATCAGAAACTTGGTGGAGAAAAATGTGCCACTTTCAGTGCGGTATCGAT
GGGCGGTCCCCAAAAAACATAACCC
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Coding sequence (CDS) from alignment at CM002463.1:583408..584482+

>rna4435 ID=rna4435|Name=rna4435|organism=Nannochloropsis gaditana|type=CDS|length=825bp|location=Sequence derived from alignment at CM002463.1:583408..584482+ (Nannochloropsis gaditana)
ATGACACAATCAAGACGGCGACCAAGGCCCCTGGATCTTGCTTTGCCGTT
GTTCGTGCTTTTCCTTATTCCCTCGCCTGCGCATCCGCTCAGCCTGGAAG
TACCGCCCCGTGACAAAGTATGCTTGTATCAGTACTACGATGTTGGGGAG
ACAGGCAAAGCAGAGGTGTTCGTCGTCAATGGAGGCAATCTTGACATCGG
CGTCAGTGTGGAAGGGCCATTCACGGACGACGTGCACGGTACACCGAGCA
AAACAACACAAGAGACTAAGACGGTGTATGACGCTATTGTGGCATCTTCT
AGCGCTTTTCTCAACCAACTGCACCCGGCGGGAGTCACAGCATCGGCGGA
CGGAATCGAAATTAGCTGGCCAGCACAACCCGGTGCCTACGCCTTGTGCC
TCGACAACACCATGAGTCACGTCCAAACTAAAGTGATCGagttttccttc
ccagcATCCAAGGAGGGTGCAGGTACGGATGACTTCGACTTGGACGCCGC
CTTGGCAGCTGCAAATGAGGGCAGCGGAACGAATGACACCATTTTAGAGA
ACATAAAGCAATCTTACAAGGCCGACCTGGCCCTTCTGAAGCGTAGCGCG
CAGCGGATCGGCCGTACTTTAACGGACGTGCAGCATAAACAGGTGAAAGA
ACGACATCGCCTCGCCCTTCAAACGGCAGCCAACCAGAAGAATCACCAGA
AGATGGTCGTGTCTTCCGTATTTGAAACCGTAGTTTTCATCAGCGTGTCT
CTTTTCCAACTTTTCTGGGTGCGGAGGTGGTTCGAGGGCCGGGGCCTGCG
GGCCCGGTCACGGGAATGGGCAtaa
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Synonyms
Publications