EWM26200.1, cds4424 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|585108199|gb|EWM26200.1| (suppressor enhancer of lin-12 protein 9 [Nannochloropsis gaditana]) HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query: 1 MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA 274
MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA
Sbjct: 1 MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA 274
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|676383849|ref|XP_009035203.1| (hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens] >gi|323454533|gb|EGB10403.1| hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens]) HSP 1 Score: 112.079 bits (279), Expect = 3.763e-24 Identity = 78/245 (31.84%), Postives = 123/245 (50.20%), Query Frame = 0
Query: 30 LSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPF-TDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVT-ASADGIEISWPAQPGA---YALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQ---SYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGL 266
L L + P++K C+Y+ + ++ EVFV++GGNLD+ V+++GPF + G P + ++ + SA L + +G A+ IEI+ A G Y +CLDN S + K++ S +K G D + A G N +E I++ S ++ +A+LK KQ +ER RLA + H MV S+FETVV+I S+FQ+ +VRRWF G+G+
Sbjct: 2128 LILRLAPKEKRCVYEELEARQSASLEVFVLSGGNLDVSVAIDGPFPVVEESGLPRSAHRRGES---GLSKPHSAHLVESKQSGAAFAAPHVIEIAADAAVGGGGIYRICLDNAASRISEKLVTLSV--TKAGGAAGDGEPVRKKREAEAKPGKNSESIEKIEKRVVSLRSQIAVLK--------------DKQTRERRRLAHHKSLYDAKHNTMVEGSLFETVVYIVCSIFQIVFVRRWFSGKGI 2353
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|298706528|emb|CBJ29498.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 102.449 bits (254), Expect = 2.199e-22 Identity = 78/267 (29.21%), Postives = 126/267 (47.19%), Query Frame = 0
Query: 17 LFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQ---------TKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA 274
+F+L + + A L + R +VC ++Y + +A+VFV GGNLDIG SV GP D G + K A + S + + A + + G + + A+ G Y +CL N S+ Q ++V+E A+K+ A D DL A GS N K DLA++ + + + +++ Q ER +L + A + N+ MV SSV ET+V + V + Q+ +VR+WF G+G ++WA
Sbjct: 10 VFLLCCVSATAASTYL-IEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNVVHGRTKLKLRKSAKITSENILEDNDDSAELFS---GYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDG--ATKKHAKDDTTDLQDA-----GGSPKN-----------KEDLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKG--TLLKQWA 252
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|40056984|dbj|BAD05161.1| (emp24/gp25L/p24 family protein [Dictyostelium discoideum]) HSP 1 Score: 80.1073 bits (196), Expect = 1.723e-14 Identity = 59/249 (23.69%), Postives = 109/249 (43.78%), Query Frame = 0
Query: 17 LFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKAD-LALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGR 264
L LFLI S + L+L+V P+ + C Y + + G+T V+ GG LDI V + P + T+++ + + Q AG + GAY +C +N MS KV+ F++ + +EG +K+ K D + + +S Q+I R L V H+Q K R+R ++ + ++V ++ E +V + + + Q++++R+WF+ +
Sbjct: 13 LVTLFLIGSSS-ALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDP--------------KGNTIFERLHFDTQMKGKQSFTAG--------------ESGAYKVCFNNEMSRFTAKVVTFTWASEEEG----------------------------VKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWFDNK 204
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|66800147|ref|XP_628999.1| (hypothetical protein DDB_G0293540 [Dictyostelium discoideum AX4] >gi|74896754|sp|Q54BN0.1|TMEDB_DICDI RecName: Full=Transmembrane emp24 domain-containing protein B; Flags: Precursor >gi|60462361|gb|EAL60582.1| hypothetical protein DDB_G0293540 [Dictyostelium discoideum AX4]) HSP 1 Score: 80.1073 bits (196), Expect = 2.028e-14 Identity = 59/249 (23.69%), Postives = 109/249 (43.78%), Query Frame = 0
Query: 17 LFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKAD-LALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGR 264
L LFLI S + L+L+V P+ + C Y + + G+T V+ GG LDI V + P + T+++ + + Q AG + GAY +C +N MS KV+ F++ + +EG +K+ K D + + +S Q+I R L V H+Q K R+R ++ + ++V ++ E +V + + + Q++++R+WF+ +
Sbjct: 13 LVTLFLIGSSS-ALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDP--------------KGNTIFERLHFDTQMKGKQSFTAG--------------ESGAYKVCFNNEMSRFTAKVVTFTWASEEEG----------------------------VKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWFDNK 204
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|1210515061|dbj|GAX26024.1| (hypothetical protein FisN_4Hh479 [Fistulifera solaris]) HSP 1 Score: 80.4925 bits (197), Expect = 5.936e-14 Identity = 71/308 (23.05%), Postives = 115/308 (37.34%), Query Frame = 0
Query: 18 FVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTD--------------------------DVHG---------------------TPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQP----------GAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDD----FDLDAALAAANEGSGTNDTI-LENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
F L L A PL + R CLY+ + E +FV++G +L V + GP D DV G P +T +E KT L H + A ++ A+P G Y C+ + + + E E G D+ + E + DT +E IK D + + + + L D+Q KQ +ER RLA+ A N+ +H +M ++S+ ET++F+ V+ +Q++ +RRWF+G
Sbjct: 9 FALLLAICHALPLQFLINQRSSECLYEKLEESEAATFSLFVLSGKSLRATVEISGPVADAAVVSGMALQDGIDAFDQGRRPKGSLDVSGEVDFEHLNLGEPEFEDPVLESVPGETAEERKTRR---AEERRKILEARHQKEMHARKQKKKVQTEAEPYLRTIQAPLAGWYRFCVKASFNQI---TAEIDLRKESELGGLDEDGHVMTNQQRIMEEEEKAMDQDTAAIEGIKDK---DFQATRTQLKELRKLLNDIQTKQSQERLRLAVHAATNEHSHSRMALNSLMETILFMLVTGYQVYTIRRWFKG 307
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|1072233919|gb|OEU18649.1| (hypothetical protein FRACYDRAFT_236928 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 78.1814 bits (191), Expect = 3.303e-13 Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 0
Query: 29 PLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTD-DVHGTPSKTTQET----------KTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTN-DTILENIKQSYKA----DLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
P+ + + R CL++ D GE VF+++G L SVEGP D DV TQ +T+ + L QL S P + G Y +C+ + + V V E E G +D + + E + D LE S + D + + + R L ++Q Q KER RL + N+ +H MV++S+ ET++F++V+ +Q++ +R+WF G
Sbjct: 34 PMQVTINQRQAECLHEKLDEGEKVTVSVFILSGSQLKATWSVEGPIADLDVDSGLELYTQSMGFAPSGRKSQRTLSYSQEKREEKKLAQLKKVRQDGEPLLYTTSAP-EAGWYRMCVTSNWNQV---VAEMEMRKESELGGLND---EGHVRTYEEKQMIDEDQELEEDTASAEGIKDEDFTETRDKVKDLRRLLNEIQSMQQKERRRLTVHAETNEHSHSSMVLNSLMETLLFMAVTGYQVYTIRKWFSG 277
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|219127940|ref|XP_002184183.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404414|gb|EEC44361.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 75.485 bits (184), Expect = 2.261e-12 Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 0
Query: 178 NDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
+ ++E IK D K + + R L D+Q KQ +ERHRL + A N+ +H +MV+SS+ ET++F++V+ FQ+F +RRWF+G
Sbjct: 180 DSAVMEGIKDE---DFDSTKDKLKTLRRLLADIQTKQQQERHRLIVHAATNEHSHSRMVLSSLLETILFMAVTGFQVFTIRRWFKG 262
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|1210516868|dbj|GAX24357.1| (hypothetical protein FisN_4Lh479 [Fistulifera solaris]) HSP 1 Score: 69.707 bits (169), Expect = 1.701e-10 Identity = 60/237 (25.32%), Postives = 102/237 (43.04%), Query Frame = 0
Query: 46 YDVGETGKAEVFV---VNGGNLDIGVSVEGPFTDDV-HGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQP----------GAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDD----FDLDAALAAANEGSGTNDTI-LENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
+D G K + V V+ +L++G E F D V P +T +E KT L H + A ++ A+P G Y C+ + + + E E G D+ + E + DT +E IK D + + + + L D+Q KQ +ER RLA+ A N+ +H +M ++S+ ET++F+ V+ +Q++ +RRWF+G
Sbjct: 10 FDQGRRPKGSLDVSGEVDFEHLNLG---EPEFEDPVLESVPGETAEERKTRR---AEERRKILEARHQKEMHARKQKKKVQTEAEPYLRTIQAPLAGWYRFCVKASFNQI---TAEIDLRKESEFGGLDEDGHVMTNQQRIMEEEEKAMDQDTAAIEGIKDK---DFQATRTQLKELRKLLNDIQTKQSQERLRLAVHAATNEHSHSRMALNSLMETILFMLVTGYQVYTIRRWFKG 234
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|831778803|ref|XP_012755522.1| (hypothetical protein SAMD00019534_045780 [Acytostelium subglobosum LB1] >gi|735856154|dbj|GAM21403.1| hypothetical protein SAMD00019534_045780 [Acytostelium subglobosum LB1]) HSP 1 Score: 68.5514 bits (166), Expect = 2.490e-10 Identity = 57/241 (23.65%), Postives = 99/241 (41.08%), Query Frame = 0
Query: 25 SPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRG 265
+ ++ L+L+V P+ C +Y D G+ V+ GG LD+ V V P + T+Y + SS TAS GAY +C +N MS KVI F++ D A A +G N + +S Q+I RTL + +Q K R+R ++ ++++V ++ + +V +S+ + Q++++RRWF +
Sbjct: 19 ATSNALTLQVEPKMTECFSEYVDSGKISFINYQVIRGGLLDVDVKVFDPMGN--------------TIYSILHFESSM----KGKMSFTAS----------NSGAYKICFNNEMSRFTAKVITFTWT------------YDNADTAFVKGETLNP----------------MDQSIQKIERTLQSIVFEQKKMRYREQTNRDTSESTNERVVRWTIIQLLVLVSMGVAQIWFLRRWFNSKS 203 The following BLAST results are available for this feature:
BLAST of EWM26200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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