EWM26200.1, cds4424 (CDS) Nannochloropsis gaditana

Overview
NameEWM26200.1
Unique Namecds4424
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:583511..584335 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26200.1
Productsuppressor enhancer of lin-12 protein 9
Orig transcript idgnl|cribi|Naga_100025g58.7491.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:583511..584335 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Homology
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|585108199|gb|EWM26200.1| (suppressor enhancer of lin-12 protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA 274
            MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA
Sbjct:    1 MTQSRRRPRPLDLALPLFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA 274          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|676383849|ref|XP_009035203.1| (hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens] >gi|323454533|gb|EGB10403.1| hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens])

HSP 1 Score: 112.079 bits (279), Expect = 3.763e-24
Identity = 78/245 (31.84%), Postives = 123/245 (50.20%), Query Frame = 0
Query:   30 LSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPF-TDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVT-ASADGIEISWPAQPGA---YALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQ---SYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGL 266
            L L + P++K C+Y+  +  ++   EVFV++GGNLD+ V+++GPF   +  G P    +  ++    +    SA L +   +G   A+   IEI+  A  G    Y +CLDN  S +  K++  S   +K G    D +       A    G N   +E I++   S ++ +A+LK               KQ +ER RLA   +     H  MV  S+FETVV+I  S+FQ+ +VRRWF G+G+
Sbjct: 2128 LILRLAPKEKRCVYEELEARQSASLEVFVLSGGNLDVSVAIDGPFPVVEESGLPRSAHRRGES---GLSKPHSAHLVESKQSGAAFAAPHVIEIAADAAVGGGGIYRICLDNAASRISEKLVTLSV--TKAGGAAGDGEPVRKKREAEAKPGKNSESIEKIEKRVVSLRSQIAVLK--------------DKQTRERRRLAHHKSLYDAKHNTMVEGSLFETVVYIVCSIFQIVFVRRWFSGKGI 2353          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|298706528|emb|CBJ29498.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.449 bits (254), Expect = 2.199e-22
Identity = 78/267 (29.21%), Postives = 126/267 (47.19%), Query Frame = 0
Query:   17 LFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQ---------TKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRGLRARSREWA 274
            +F+L  + + A    L +  R +VC ++Y +     +A+VFV  GGNLDIG SV GP   D  G       + K    A + S +   +    A + +   G +  + A+ G Y +CL N  S+ Q         ++V+E    A+K+ A  D  DL  A      GS  N           K DLA++ +    + +   +++  Q  ER +L  +  A + N+  MV SSV ET+V + V + Q+ +VR+WF G+G     ++WA
Sbjct:   10 VFLLCCVSATAASTYL-IEERAQVCFFRYVEEETKLQAKVFVFKGGNLDIGFSVRGPSQLDDRGNVVHGRTKLKLRKSAKITSENILEDNDDSAELFS---GYDYKFDAEKGEYEICLSNDKSYAQEAKHVMLDISEVVEDG--ATKKHAKDDTTDLQDA-----GGSPKN-----------KEDLAIITKEMDGLSKVFEEIKSFQELERMQLTQRKTAAEDNNASMVQSSVLETIVLLLVGIGQIIFVRKWFSGKG--TLLKQWA 252          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|40056984|dbj|BAD05161.1| (emp24/gp25L/p24 family protein [Dictyostelium discoideum])

HSP 1 Score: 80.1073 bits (196), Expect = 1.723e-14
Identity = 59/249 (23.69%), Postives = 109/249 (43.78%), Query Frame = 0
Query:   17 LFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKAD-LALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGR 264
            L  LFLI S +  L+L+V P+ + C Y + + G+T      V+ GG LDI V +  P              +  T+++ +   +     Q   AG              + GAY +C +N MS    KV+ F++ + +EG                            +K+  K D +  + +S Q+I R L  V H+Q K R+R       ++  + ++V  ++ E +V + + + Q++++R+WF+ +
Sbjct:   13 LVTLFLIGSSS-ALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDP--------------KGNTIFERLHFDTQMKGKQSFTAG--------------ESGAYKVCFNNEMSRFTAKVVTFTWASEEEG----------------------------VKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWFDNK 204          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|66800147|ref|XP_628999.1| (hypothetical protein DDB_G0293540 [Dictyostelium discoideum AX4] >gi|74896754|sp|Q54BN0.1|TMEDB_DICDI RecName: Full=Transmembrane emp24 domain-containing protein B; Flags: Precursor >gi|60462361|gb|EAL60582.1| hypothetical protein DDB_G0293540 [Dictyostelium discoideum AX4])

HSP 1 Score: 80.1073 bits (196), Expect = 2.028e-14
Identity = 59/249 (23.69%), Postives = 109/249 (43.78%), Query Frame = 0
Query:   17 LFVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKAD-LALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGR 264
            L  LFLI S +  L+L+V P+ + C Y + + G+T      V+ GG LDI V +  P              +  T+++ +   +     Q   AG              + GAY +C +N MS    KV+ F++ + +EG                            +K+  K D +  + +S Q+I R L  V H+Q K R+R       ++  + ++V  ++ E +V + + + Q++++R+WF+ +
Sbjct:   13 LVTLFLIGSSS-ALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDP--------------KGNTIFERLHFDTQMKGKQSFTAG--------------ESGAYKVCFNNEMSRFTAKVVTFTWASEEEG----------------------------VKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWFDNK 204          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|1210515061|dbj|GAX26024.1| (hypothetical protein FisN_4Hh479 [Fistulifera solaris])

HSP 1 Score: 80.4925 bits (197), Expect = 5.936e-14
Identity = 71/308 (23.05%), Postives = 115/308 (37.34%), Query Frame = 0
Query:   18 FVLFLIPSPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTD--------------------------DVHG---------------------TPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQP----------GAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDD----FDLDAALAAANEGSGTNDTI-LENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
            F L L    A PL   +  R   CLY+  +  E     +FV++G +L   V + GP  D                          DV G                      P +T +E KT            L   H   + A     ++   A+P          G Y  C+  + + +     E       E  G D+          +    E +   DT  +E IK     D    +   + + + L D+Q KQ +ER RLA+  A N+ +H +M ++S+ ET++F+ V+ +Q++ +RRWF+G
Sbjct:    9 FALLLAICHALPLQFLINQRSSECLYEKLEESEAATFSLFVLSGKSLRATVEISGPVADAAVVSGMALQDGIDAFDQGRRPKGSLDVSGEVDFEHLNLGEPEFEDPVLESVPGETAEERKTRR---AEERRKILEARHQKEMHARKQKKKVQTEAEPYLRTIQAPLAGWYRFCVKASFNQI---TAEIDLRKESELGGLDEDGHVMTNQQRIMEEEEKAMDQDTAAIEGIKDK---DFQATRTQLKELRKLLNDIQTKQSQERLRLAVHAATNEHSHSRMALNSLMETILFMLVTGYQVYTIRRWFKG 307          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|1072233919|gb|OEU18649.1| (hypothetical protein FRACYDRAFT_236928 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.1814 bits (191), Expect = 3.303e-13
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 0
Query:   29 PLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTD-DVHGTPSKTTQET----------KTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTN-DTILENIKQSYKA----DLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
            P+ + +  R   CL++  D GE     VF+++G  L    SVEGP  D DV       TQ            +T+  +        L QL              S P + G Y +C+ +  + V   V E       E  G +D   +  +    E    + D  LE    S +     D    +   + + R L ++Q  Q KER RL +    N+ +H  MV++S+ ET++F++V+ +Q++ +R+WF G
Sbjct:   34 PMQVTINQRQAECLHEKLDEGEKVTVSVFILSGSQLKATWSVEGPIADLDVDSGLELYTQSMGFAPSGRKSQRTLSYSQEKREEKKLAQLKKVRQDGEPLLYTTSAP-EAGWYRMCVTSNWNQV---VAEMEMRKESELGGLND---EGHVRTYEEKQMIDEDQELEEDTASAEGIKDEDFTETRDKVKDLRRLLNEIQSMQQKERRRLTVHAETNEHSHSSMVLNSLMETLLFMAVTGYQVYTIRKWFSG 277          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|219127940|ref|XP_002184183.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404414|gb|EEC44361.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.485 bits (184), Expect = 2.261e-12
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  178 NDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
            +  ++E IK     D    K   + + R L D+Q KQ +ERHRL +  A N+ +H +MV+SS+ ET++F++V+ FQ+F +RRWF+G
Sbjct:  180 DSAVMEGIKDE---DFDSTKDKLKTLRRLLADIQTKQQQERHRLIVHAATNEHSHSRMVLSSLLETILFMAVTGFQVFTIRRWFKG 262          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|1210516868|dbj|GAX24357.1| (hypothetical protein FisN_4Lh479 [Fistulifera solaris])

HSP 1 Score: 69.707 bits (169), Expect = 1.701e-10
Identity = 60/237 (25.32%), Postives = 102/237 (43.04%), Query Frame = 0
Query:   46 YDVGETGKAEVFV---VNGGNLDIGVSVEGPFTDDV-HGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQP----------GAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDD----FDLDAALAAANEGSGTNDTI-LENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEG 263
            +D G   K  + V   V+  +L++G   E  F D V    P +T +E KT            L   H   + A     ++   A+P          G Y  C+  + + +     E       E  G D+          +    E +   DT  +E IK     D    +   + + + L D+Q KQ +ER RLA+  A N+ +H +M ++S+ ET++F+ V+ +Q++ +RRWF+G
Sbjct:   10 FDQGRRPKGSLDVSGEVDFEHLNLG---EPEFEDPVLESVPGETAEERKTRR---AEERRKILEARHQKEMHARKQKKKVQTEAEPYLRTIQAPLAGWYRFCVKASFNQI---TAEIDLRKESEFGGLDEDGHVMTNQQRIMEEEEKAMDQDTAAIEGIKDK---DFQATRTQLKELRKLLNDIQTKQSQERLRLAVHAATNEHSHSRMALNSLMETILFMLVTGYQVYTIRRWFKG 234          
BLAST of EWM26200.1 vs. NCBI_GenBank
Match: gi|831778803|ref|XP_012755522.1| (hypothetical protein SAMD00019534_045780 [Acytostelium subglobosum LB1] >gi|735856154|dbj|GAM21403.1| hypothetical protein SAMD00019534_045780 [Acytostelium subglobosum LB1])

HSP 1 Score: 68.5514 bits (166), Expect = 2.490e-10
Identity = 57/241 (23.65%), Postives = 99/241 (41.08%), Query Frame = 0
Query:   25 SPAHPLSLEVPPRDKVCLYQYYDVGETGKAEVFVVNGGNLDIGVSVEGPFTDDVHGTPSKTTQETKTVYDAIVASSSAFLNQLHPAGVTASADGIEISWPAQPGAYALCLDNTMSHVQTKVIEFSFPASKEGAGTDDFDLDAALAAANEGSGTNDTILENIKQSYKADLALLKRSAQRIGRTLTDVQHKQVKERHRLALQTAANQKNHQKMVVSSVFETVVFISVSLFQLFWVRRWFEGRG 265
            + ++ L+L+V P+   C  +Y D G+       V+ GG LD+ V V  P  +              T+Y  +   SS           TAS            GAY +C +N MS    KVI F++              D A  A  +G   N                 + +S Q+I RTL  +  +Q K R+R       ++  ++++V  ++ + +V +S+ + Q++++RRWF  + 
Sbjct:   19 ATSNALTLQVEPKMTECFSEYVDSGKISFINYQVIRGGLLDVDVKVFDPMGN--------------TIYSILHFESSM----KGKMSFTAS----------NSGAYKICFNNEMSRFTAKVITFTWT------------YDNADTAFVKGETLNP----------------MDQSIQKIERTLQSIVFEQKKMRYREQTNRDTSESTNERVVRWTIIQLLVLVSMGVAQIWFLRRWFNSKS 203          
The following BLAST results are available for this feature:
BLAST of EWM26200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108199|gb|EWM26200.1|0.000e+0100.00suppressor enhancer of lin-12 protein 9 [Nannochlo... [more]
gi|676383849|ref|XP_009035203.1|3.763e-2431.84hypothetical protein AURANDRAFT_62671 [Aureococcus... [more]
gi|298706528|emb|CBJ29498.1|2.199e-2229.21expressed unknown protein [Ectocarpus siliculosus][more]
gi|40056984|dbj|BAD05161.1|1.723e-1423.69emp24/gp25L/p24 family protein [Dictyostelium disc... [more]
gi|66800147|ref|XP_628999.1|2.028e-1423.69hypothetical protein DDB_G0293540 [Dictyostelium d... [more]
gi|1210515061|dbj|GAX26024.1|5.936e-1423.05hypothetical protein FisN_4Hh479 [Fistulifera sola... [more]
gi|1072233919|gb|OEU18649.1|3.303e-1325.90hypothetical protein FRACYDRAFT_236928 [Fragilario... [more]
gi|219127940|ref|XP_002184183.1|2.261e-1240.70predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516868|dbj|GAX24357.1|1.701e-1025.32hypothetical protein FisN_4Lh479 [Fistulifera sola... [more]
gi|831778803|ref|XP_012755522.1|2.490e-1023.65hypothetical protein SAMD00019534_045780 [Acytoste... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4435rna4435Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications