|
|
Properties
| Property Name | Value |
|---|
| Product | Uncharacterized protein family UPF0136, Transmembrane |
| Orig transcript id | gnl|cribi|Naga_100025g59.7512.mrna |
| Orig protein id | gnl|cribi|Naga_100025g59.7512 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:582325..583343 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4434 ID=rna4434|Name=rna4434|organism=Nannochloropsis gaditana|type=mRNA|length=2231bp
CTTGTTGCACCACCTCAGCAGATGTCCCACACCGGCAATACACGCGTGCC
TGCGCCGTCGCGACGTGGGTCAGGGATCTTGTCTGGAAGCGGTTTTGAAA
CGTCAAGGAGGATTTGGGGTGCGTTCGATGAACATTGTGCCGCGTATGCG
TTCTCATATGCAGCCACGTCGTCCTCATCTCGCCTCCGAGTGAGAGGAAC
ACGTATTGAGGTCGGACTCTGTCTTACCTCCGCGCCTTTCTTCTTCGGGA
AGTCCATGCCTTCTCCTTTCCGAAAGGGGTTATACCTGTCCGGCACAATC
GGTTGTGCTTTATCAACAAACCACGTACATCAAACACTGCATTTTTTTCT
TTTTCCTCTTTACCTGTCCAGAAGGATCCAGATCTAGATCGCCACCTCAG
ATCGAAAGACACGTTCGAAGAGGAACATCGACATCACGCCTCAGTGTGTC
TCAATGCCAATGGGTCGCATACAACGCAAGACAGTCACGCACCATCATCT
TCTAGCCGCGATTCTGGCCATCGCTTCTGTGGGCATGACGCAAACTAGAG
CATTCCTCATGCCCCCTCCTGGTGTTGCGGTCAGAAAAGCCGGAACACGC
ACGTCTCCAAACACGTACGCCGCAGTTATGGATGCACCTGTCTCAATCGG
TGCATTGGTAGGCACTCAAAGCCCCCGAATAAGTACACAGAAGAGCACAG
GACGGCGTGGACGAAGAAGGCCAACCAGTGCACCACCCTCCTCGTCAGCC
TCCCACCCCACCAACGACCATCCCCGCCAAAACGAAGTCATCCATGCACC
CGATTCCCACGCATCCCCCACCGAACATGACATCTTAATGCAGGGGCGTA
TAAATGCCGTGCAGCGCGCAGCAGTTGCGATTCAAAAGCAACGGAGTCTG
AGCAAGACTCTCGGCCGCGCGCCCACAGGTGCTGAGTGGGCCCAGGCCCT
AGGCGGTGTGACAGAGGAGGGGCTCGGGCGGCTTTTGAGACAAGGAACTG
TTGCGCAAGCCGAACTGGTGAAAGGATGGGAGGGCCTGGTCACCATGTTT
GTTGGAAAGTACGCACAATCCTTGTCGGACTCGGAGCTGCAGGACTTGGT
CGTCGAGGGGCAGATGGGGGTGGTGGAGGCGGCCCTCCGTTTTCAGGGTG
GACAAGGCGCCACCTTTAAGACCTACGCCTTTTACTGGGTCCGAAAGCGC
GTGATGGATGCGGCAGGCATGTACGACCGCTCGACGTTCGCTGGCGCCCA
CGAAGCGAGGCAGGCGTCGCTAATCAAGAAGGCGGTGCAATCACATGAAC
GTGAGACGGGGGGTAAGATCTTGAGCACGCCGGAGATCGCCGACAAAGTT
GGAATACCATCGGCGAAGGTGGAGCAGCTCGCCCGGCGGGGCAAGCGGTA
TGGGCTCATGGAGAGGAGCAGTGGTCAGGATGGATTGGGCAGGGGGACAA
GCCTGAGGTTCTCCGACACCCTCCAGGACACCGAGGATGTAGGAGGCAAC
CAAGTACGAGTATTGGACTCAATGTACGTCTCAGAGGTGGAGGAAGCAGT
GCGGTTGGCGGTAGCGCGATTGCCGCAGGAGGAGCGGACTGTGCTAAACC
ACCGGCTGGGGCTGGAGGACGGGCTCCCCAAGACGTGGGAGGAACTAGGG
CAAGTGATGGACGGATGCAGCGTTTCCTATATGCGGAAGGTGGAGGCGAA
AGCAAAGACGCACTTGCGCCGAAACGTGGATGTTGTTCGGTTAGTACACC
GGCGTCCAGCCTCCTTTGACGAGACGTTTGTGGCGGCTGGAGGTGTATAA
AAGGCGCGACGGTGCCAGGGGAAGAACAGGGAATGTGTCGATATTGATAG
ATTGAGATAGTTTGGCAGTAGCGATGGTATGCGGTGTGGTGACGTGTTCA
GAACCCTGAGAAACGTGAGTATCCGGAGGACTCGTCTCAGTGCGAGGACA
GCGAGTCCTGTCCCATTATACTGCCGACTTAGTTGGTATTATGCCACCTT
TGCGTTGACTGAGGTTGAGTGATGGGGAGTCAGCTTGAAAGGTGGTCAGA
GTGTTTCTCTATTGAAGTGAGGATACACATCCCCAAACAGAGAGACGAAG
GATAACAGTCGTTTCGTGTGAAATATGTACAGCAGTGCAACAATTGCAGC
TAACTTCTGTTCGACATGAATGCAATGAAGGCAAGAATATAAGGCAGTAA
TCTATGCTGGGCCTGAAATCTAAATTTTATC back to topprotein sequence of rna4434 >rna4434-protein ID=rna4434-protein|Name=rna4434|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQ
EYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLV
SVFLMYRVVVPVPPKKDKK back to topmRNA from alignment at CM002463.1:582325..583343- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4434 ID=rna4434|Name=rna4434|organism=Nannochloropsis gaditana|type=mRNA|length=1019bp|location=Sequence derived from alignment at CM002463.1:582325..583343- (Nannochloropsis gaditana)
AGTCGATGACCGCGCGACTTAGAGCTCCTTGCGAAAGACCAGGGGACATT
TTCGTGCCTCCGTAACTTGTCTGAGCCTGAGAAGTAGCGCTGGTTTCAAG
AGAGGCGCCAAGATGCCTGCAAAAGACAATCGGCACCCCGTTTCCCCATC
CATTTTTCTCCGCGGTATCATCGCATCTGTGCTTTTACTCGTCCTTAAAC
ATGGTTTACATACTGAGAGGGCTCACGCTCATATTCTCTTTGCCATCTTT
CCCTCCTATACTTTTGCTCTTAAAGAAAAGCGTCGAAGTTCCCTTCCATG
TACTCTTTCTGTATCACCATCCCTTACTCGGGCATCGTCGCCTTGGGCGG
TATTATTGGCTACGTGAAAGCGGGCTCGTTACCGTCCCTTCTTGCGGGCC
TTGGCTTGGGAAGCGGATTGGCAATGCTAGGGTACGGGGAATTGCAGGAG
TATAAAAAGACGCAGGCCGTCACCCGGAAATGGACGCTTCTCTCTCTCCT
CGTTTCGGGAGGCATGACAATAGCCATGGGGCTGAAATGTGCGAAAACTA
AGGGGAGCTTGGCCCCGGCCATCTTTGCGTCCACTTCAGGTCTGGTGTCA
GTTTTCTTGATGTACCGTGTCGTAGTGCCTGTGCCTCCCAAGAAAGATAA
GAAGTAACTCGATTTGCCAGCATCAGAAGTGAGCATCTGGCTCAAAAATG
CACCGAGAAGACAGCGCTTATGGTGCTAGACATGACGAATGACTAGATGA
CAACACGTGGGATACTACATAATGGCAACTGGAGAATATGTAGGAGTGGT
GGTGCGGTCGGCGCATACTTTTGAAGGCACGACTGGAGCGGGAGCCTCGG
ACCACTTTCGGGAAGAGGGAGGGGAAGAGCAGCAGGAGAGACGGGAAGGC
GGGAGTAGAGCAACAGCAGCCAACCAAAGCAGATAAAATTTAGATTTCAG
GCCCAGCATAGATTACTGCCTTATATTCTTGCCTTCATTGCATTCATGTC
GAACAGAAGTTAGCTGCAA back to topCoding sequence (CDS) from alignment at CM002463.1:582325..583343- >rna4434 ID=rna4434|Name=rna4434|organism=Nannochloropsis gaditana|type=CDS|length=360bp|location=Sequence derived from alignment at CM002463.1:582325..583343- (Nannochloropsis gaditana)
ATGTACTCTTTCTGTATCACCATCCCTTACTCGGGCATCGTCGCCTTGGG
CGGTATTATTGGCTACGTGAAAGCGGGCTCGTTACCGTCCCTTCTTGCGG
GCCTTGGCTTGGGAAGCGGATTGGCAATGCTAGGGTACGGGGAATTGCAG
GAGTATAAAAAGACGCAGGCCGTCACCCGGAAATGGACGCTTCTCTCTCT
CCTCGTTTCGGGAGGCATGACAATAGCCATGGGGCTGAAATGTGCGAAAA
CTAAGGGGAGCTTGGCCCCGGCCATCTTTGCGTCCACTTCAGGTCTGGTG
TCAGTTTTCTTGATGTACCGTGTCGTAGTGCCTGTGCCTCCCAAGAAAGA
TAAGAAGTAA back to top
|