EWM26221.1, cds4423 (CDS) Nannochloropsis gaditana

Overview
NameEWM26221.1
Unique Namecds4423
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:582687..583046 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26221.1
ProductUncharacterized protein family UPF0136, Transmembrane
Orig transcript idgnl|cribi|Naga_100025g59.7512.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:582687..583046 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005349UPF0136_TM
Homology
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|585108220|gb|EWM26221.1| (Uncharacterized protein family UPF0136, Transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 231.106 bits (588), Expect = 1.248e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVVPVPPKKDKK 119
            MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVVPVPPKKDKK
Sbjct:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVVPVPPKKDKK 119          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|673029390|ref|XP_008868656.1| (hypothetical protein H310_05665 [Aphanomyces invadans] >gi|574475051|gb|ETW02051.1| hypothetical protein H310_05665 [Aphanomyces invadans])

HSP 1 Score: 87.4261 bits (215), Expect = 6.717e-20
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVF 103
            MY FC+T+PY   +A+GGI+GYV +GS  SL AG+G G+ L + GY   QE++ +  V++ W+ LSL VS  +++ MGL+  +T+  +   + ASTS  +S+F
Sbjct:    1 MYDFCLTLPYGAAIAVGGIVGYVNSGSSASLTAGVGAGTLLLVFGYASYQEFQSSPIVSKTWSALSLGVSAVLSVVMGLRYKETQNFVPAGLIASTSIGMSLF 103          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|698801336|ref|XP_009833697.1| (hypothetical protein H257_09238 [Aphanomyces astaci] >gi|574111289|gb|ETV76785.1| hypothetical protein H257_09238 [Aphanomyces astaci])

HSP 1 Score: 85.8853 bits (211), Expect = 2.371e-19
Identity = 43/103 (41.75%), Postives = 67/103 (65.05%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVF 103
            MY FC+T+PY   +A+GGI+GYV +GS  SL AG+G G+ L + GY   QE++ +  V++ W+ LSL VS  +++ MGL+   T+  +   + A TS  +S+F
Sbjct:    1 MYDFCLTLPYGAAIAVGGIVGYVNSGSSASLTAGVGAGTLLLIFGYASYQEFQSSPVVSKTWSALSLGVSSVLSVVMGLRYKDTQNFVPAGVIAGTSIGMSLF 103          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|813171472|ref|XP_012204491.1| (hypothetical protein SPRG_09677 [Saprolegnia parasitica CBS 223.65] >gi|641530732|gb|KDO24844.1| hypothetical protein SPRG_09677 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 80.1073 bits (196), Expect = 5.316e-17
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVVPVPPKKDKK 119
            MY FC+T+PY G +ALGG++GYV +GS+ SL AGLG GS L + G    QEY+++  +++ W+ LSL VS  +T+ MGL+  +T       + A TS  +S F +Y++        +KK
Sbjct:    1 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTASYQEYQQSPKISKLWSGLSLGVSSVLTVVMGLRYKETNSLFPAGVVAGTSAAMSAFYLYKLASNDKANYNKK 119          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|669151172|ref|XP_008611148.1| (hypothetical protein SDRG_07108 [Saprolegnia diclina VS20] >gi|530737156|gb|EQC35398.1| hypothetical protein SDRG_07108 [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 9.243e-17
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVVPVPPKKDKK 119
            MY FC+T+PY G +ALGG++GYV +GS+ SL AGLG GS L + G    QEY+++  +++ W+ LSL VS  +T+ MGL+  +T       + A TS  +S F +Y++        +KK
Sbjct:    1 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTASYQEYQQSPKISKLWSGLSLGVSSVLTVVMGLRYKETNSLFPAGVVAGTSAAMSAFYLYKLASNDKASYNKK 119          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|298707706|emb|CBJ26023.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.485 bits (184), Expect = 3.982e-15
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRV 108
            M+ FC+TIPY  IV  GGIIG++ AGS  SL+AG G G+ L +LGYG   EYK    V++ WT+ SL++S  + + M  +  KT   +  A     + L++ F  Y++
Sbjct:    1 MHDFCLTIPYGMIVMFGGIIGFLAAGSKASLMAGGGSGALLMLLGYGGYMEYKAKGTVSQLWTIASLVISNVIWVMMAKRFRKTGKIMPSAPLGILALLMAFFYAYQM 108          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|953487205|emb|CEG49267.1| (transmembrane protein 14c [Plasmopara halstedii])

HSP 1 Score: 75.0998 bits (183), Expect = 4.522e-15
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMY 106
            MY FC+TIPY  ++ +GG+IG++  GS  S+ AG   G+ L+ LGY    EYK++   ++ W  LSL VS  +TI MG +  KT         A+ S  +S+F ++
Sbjct:    1 MYDFCLTIPYGMLLGVGGVIGFINTGSTMSVAAGGLSGAILSFLGYCSYNEYKQSPVTSKLWPGLSLAVSTALTITMGNRYNKTNAFFPAGFLAAYSAGMSIFYVW 106          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|1173945651|gb|OQR94249.1| (hypothetical protein ACHHYP_01524 [Achlya hypogyna])

HSP 1 Score: 73.559 bits (179), Expect = 1.821e-14
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVV 109
            MY FC+T+PY G +ALGG++GYV +GS+ SL AGLG GS L + G    QEY+++  +++ W+ LSL VS  +T+ MGL+  +T       + A TS  +S F + +++
Sbjct:    1 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTASYQEYQQSPKISKIWSGLSLGVSSILTVVMGLRYKETNSLFPAGVVAGTSAAMSAFYVIKLL 109          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|1173947857|gb|OQR96032.1| (H/ACA ribonucleoprotein complex subunit [Thraustotheca clavata])

HSP 1 Score: 75.0998 bits (183), Expect = 1.292e-13
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVV 109
            MY FC+T+PY G +ALGG++GYV +GS+ SL AGLG GS L + G     EY+++  V++ W+ LSL VS  +T+ MGL+  +T       + A TS  +S+F +Y+++
Sbjct:  213 MYDFCLTLPYGGAIALGGLVGYVNSGSVISLTAGLGAGSLLLLFGTVSYSEYQQSPKVSKLWSGLSLGVSSVLTVVMGLRYKETNSLFPAGVVAGTSAAMSLFYVYKLL 321          
BLAST of EWM26221.1 vs. NCBI_GenBank
Match: gi|18403201|ref|NP_564579.1| (Transmembrane proteins 14C [Arabidopsis thaliana] >gi|75169177|sp|Q9C6T7.1|FAX5_ARATH RecName: Full=Protein FATTY ACID EXPORT 5; Short=At-FAX5 >gi|12321434|gb|AAG50780.1|AC079027_3 unknown protein [Arabidopsis thaliana] >gi|18491153|gb|AAL69479.1| unknown protein [Arabidopsis thaliana] >gi|20466055|gb|AAM20362.1| unknown protein [Arabidopsis thaliana] >gi|21592962|gb|AAM64911.1| unknown [Arabidopsis thaliana] >gi|332194465|gb|AEE32586.1| Transmembrane proteins 14C [Arabidopsis thaliana] >gi|1032297569|gb|OAP11894.1| hypothetical protein AXX17_AT1G44940 [Arabidopsis thaliana])

HSP 1 Score: 69.707 bits (169), Expect = 5.917e-13
Identity = 39/120 (32.50%), Postives = 69/120 (57.50%), Query Frame = 0
Query:    1 MYSFCITIPYSGIVALGGIIGYVKAGSLPSLLAGLGLGSGLAMLGYGELQEYKKTQAVTRKWTLLSLLVSGGMTIAMGLKCAKTKGSLAPAIFASTSGLVSVFLMYRVVV---PVPPKKD 117
            M+ FC TIPY  ++ +GG IGY+K GS+ SL  G G G  + + G+  L+ ++K +  +   TLL  +++  +T  MG +  +T+  +  A+ A  S L++ F +Y++      +PPK +
Sbjct:    1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKK-TSLLATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119          
The following BLAST results are available for this feature:
BLAST of EWM26221.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108220|gb|EWM26221.1|1.248e-76100.00Uncharacterized protein family UPF0136, Transmembr... [more]
gi|673029390|ref|XP_008868656.1|6.717e-2042.72hypothetical protein H310_05665 [Aphanomyces invad... [more]
gi|698801336|ref|XP_009833697.1|2.371e-1941.75hypothetical protein H257_09238 [Aphanomyces astac... [more]
gi|813171472|ref|XP_012204491.1|5.316e-1741.18hypothetical protein SPRG_09677 [Saprolegnia paras... [more]
gi|669151172|ref|XP_008611148.1|9.243e-1741.18hypothetical protein SDRG_07108 [Saprolegnia dicli... [more]
gi|298707706|emb|CBJ26023.1|3.982e-1540.74conserved unknown protein [Ectocarpus siliculosus][more]
gi|953487205|emb|CEG49267.1|4.522e-1538.68transmembrane protein 14c [Plasmopara halstedii][more]
gi|1173945651|gb|OQR94249.1|1.821e-1442.20hypothetical protein ACHHYP_01524 [Achlya hypogyna... [more]
gi|1173947857|gb|OQR96032.1|1.292e-1343.12H/ACA ribonucleoprotein complex subunit [Thraustot... [more]
gi|18403201|ref|NP_564579.1|5.917e-1332.50Transmembrane proteins 14C [Arabidopsis thaliana] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4434rna4434Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications